Architecture of the pontin/reptin complex, essential in the assembly of several macromolecular complexes

Pontin and reptin belong to the AAA+ family, and they are essential for the structural integrity and catalytic activity of several chromatin remodeling complexes. They are also indispensable for the assembly of several ribonucleoprotein complexes, including telomerase. Here, we propose a structural model of the yeast pontin/reptin complex based on a cryo-electron microscopy reconstruction at 13 A. Pontin/reptin hetero-dodecamers were purified from in vivo assembled complexes forming a double ring. Two rings interact through flexible domains projecting from each hexamer, constituting an atypical asymmetric form of oligomerization. These flexible domains and the AAA+ cores reveal significant conformational changes when compared with the crystal structure of human pontin that generate enlarged channels. This structure of endogenously assembled pontin/reptin complexes is different than previously described structures, suggesting that pontin and reptin could acquire distinct structural states to regulate their broad functions as molecular motors and scaffolds for nucleic acids and proteins.     

A high-throughput, low-cost method for the preparation of "sequencing-ready" phage DNA template

We have developed a simple and efficient protocol for the isolation of good-quality recombinant phage DNA useful for all downstream processing, including automated sequencing. The overnight-grown phage particles were effectively precipitated (without any contaminating Escherichia coli DNA and other culture media components) by adjusting the pH of the culture medium to 5.2 with sodium acetate, followed by addition of ethanol to 25%. The phage DNA was selectively precipitated with ethanol in the presence of guanidinium thiocyanate under alkaline pH, resulting in uniform quality and quantity of phage DNA. The quality of the phage DNA preparation was demonstrated by DNA sequencing that provided an average read length of >700 bases (PHRED20 quality). This protocol for plating, picking, growing, and subsequent DNA purification of individual phage clones can be completely automated using any standard robotic platform. This protocol does not require any commercial kits and can be completed within 2 h.     

A novel potent indazole carboxylic acid derivative blocks spermatogenesis and is contraceptive in rats after a single oral dose

Women have historically been the focus for development of new contraceptive methods. The National Institutes of Health, World Health Organization, and Institute of Medicine have stressed the need to develop nonhormonal, nonsteroidal male contraceptive agents. We report results from initial dose-ranging studies of a new indazole carboxylic acid analogue, gamendazole. An infertility rate of 100% was achieved in seven out of seven proven-fertile male rats 3 wk after a single oral dose of 6 mg/kg of gamendazole. Fertility returned by 9 wk in four of seven animals, with typical numbers of normal-appearing conceptuses. A fertility rate of 100% returned in four of six animals that became infertile at a single oral dose of 3 mg/kg of gamendazole. No differences in mating behavior were observed in either of the gamendazole-treated groups versus the control (vehicle-only) group. In the animals that showed reversible infertility, a transient increase in circulating FSH levels coincided with an initial decline in inhibin B levels after administration of gamendazole, but no other significant changes in circulating reproductive hormones were observed. Gamendazole inhibited production of inhibin B by primary Sertoli cells in vitro with a median inhibitory concentration of 6.8 thorn+/- 3.0 (SEM) (3/4)x 10(-10) M, suggesting that Sertoli cells are a primary target. A biotinylated gamendazole analogue revealed cytoplasmic and perinuclear binding of gamendazole in primary Sertoli cells. Gamendazole represents the most potent new oral antispermatogenic indazole carboxylic acid to date. Our results, however, demonstrate that additional dose-finding studies are required to improve reversibility and widen the therapeutic window before more detailed drug development of this potential nonhormonal male contraceptive agent can occur.     

Modulations in key enzymes of nitrogen metabolism in two high yielding genotypes of mulberry (Morus alba L.) with differential sensitivity to salt stress

Effect of salinity stress on the performance of nitrogen metabolism was studied in two high yielding genotypes of mulberry with differential sensitivity to NaCl (S1 and ATP, salt tolerant and susceptible, respectively). Three-month-old healthy mulberry plants were subjected to different regimes of NaCl stress [0.0 (control), 0.5, 1.0 and 1.5% NaCl] and leaf samples were collected on 4, 8 and 12 DAT (days after treatment) for the analysis. The activities of nitrate reductase (NR: EC 1.6.6.1), nitrite reductase (NiR: EC 1.6.6.4), protease, glutamine synthetase (GS: EC 6.3.1.2) and its accumulation pattern, glutamate synthase (GOGAT: EC 1.4.1.13), glutamate dehydrogenase (NADH-GDH: EC 1.4.1.2 and NADPH-GDH: EC 1.4.1.4), aspartate aminotransferase (AAT: EC 2.6.1.1) and alanine aminotransferase (ALAT: EC 2.6.1.2) coupled with total protein content, free amino acid level and ammonia content were studied in leaves of both genotypes of mulberry. The total protein content in leaves of both genotypes declined with progressive accumulation of free amino acid levels. Further, the decrease in protein content was less in S1 than ATP, and it was correlated with protease activity, ammonia content and accumulation of free amino acid levels. Higher free amino acid levels were registered for S1 than ATP at 1.0 and 1.5% NaCl stress and on all days of sampling. Ammonia content was increased in both genotypes and comparatively higher ammonia levels were recorded for ATP. Increased NaCl concentrations lead to a decrease in the activity of NR and NiR in both the genotypes, the decrease was more pronounced in ATP than S1. The enhanced activity of GDH (NADH and NADPH) was noticed in both genotypes, whereas the NADPH-GDH activity was found relatively higher in S1. The immunoblot analysis with GS-45 antibodies revealed a specific cross-reaction with 42 and 45 kDa proteins in S1, and only 45 kDa protein in ATP genotype. However, increased GS protein accumulation pattern (both 42 and 45 kDa) was observed in S1 under high NaCl. Whereas, accumulation of 45 kDa protein was unchanged at all levels of stress and slight accumulation in 42 kDa protein at 1.5% NaCl was observed for ATP. Elevation in the enzyme activities of GS, GOGAT were coupled with AAT and ALAT observed in both the genotypes. Higher enzymatic activities of S1 than ATP under salinity stress may be due to efficient capacity of ammonia detoxification. Salt tolerance of S1 supports the higher metabolic activity under salinity leading to lesser amount of ammonia accumulation and higher levels of free amino acid in the tissue. In agreement with these results the physiological significance of enzymatic changes and ammonia assimilation during salt stress in relevance to plant nitrogen metabolism was discussed.     

Luminescence analysis of SrGa2Si2O8: RE3+ (RE = Dy,Tm) phosphors

This article reports on the luminescence properties of rare earth (Dy³⁺ and Tm³⁺)ions doped SrGa₂Si₂O₈ phosphor were studied. SrGa₂Si₂O₈phosphors weresynthesizedby employing solid state reaction method.From the measured X‐ray diffraction (XRD) pattern of the samplemonoclinic phase structure has been observed. Thermoluminescenceand Mechanoluminescence properties of the γ‐ray irradiated samples have been studied. Photoluminescence spectra of Dy³⁺ activated SrGa₂Si₂O₈phosphor has been measured with an excitation wavelength at 348 nm,and it shows two emission bands at 483 and 574 nm due to ⁴F_9/2 → ⁶H_15/2 and ⁴F_9/2 → ⁶H_13/2 transitions respectively. Whereas the photoluminescence spectra of Tm³⁺ activated SrGa₂Si₂O₈ phosphor has been measured with an excitation wavelength at 359 nm and it exhibits two emission bands at 454 and 472 nm due to ¹D₂ → ³F₄ and¹G₄ → ³H₆ transitions respectively. In thermoluminescence study, γ‐irradiatedthermoluminescence glow curve of SrGa₂Si₂O₈:Dy³⁺ phosphor shows two well defined peaks at 293 °C (peak1)and 170 °C (peak2) whereas thermoluminescence glow curve of SrGa₂Si₂O₈:Tm³⁺ phosphor shows peaks at 292 °C (peak1) and 184 °C (peak2) indicating that two sets of traps are being activated within the particular temperature range and the trapping parameters associated with the prominent glow peaks of SrGa₂Si₂O₈:Dy³⁺ and SrGa₂Si₂O₈:Tm³⁺ are calculated using Chen's peak shape and initial rise method.From the Mechanoluminescence study, only one glow peak has been observed. Copyright © 2016 John Wiley & Sons, Ltd.     

Aldo‐keto reductase enzymes detoxify glyphosate and improve herbicide resistance in plants

In recent years, concerns about the use of glyphosate‐resistant crops have increased because of glyphosate residual levels in plants and development of herbicide‐resistant weeds. In spite of identifying glyphosate‐detoxifying genes from microorganisms, the plant mechanism to detoxify glyphosate has not been studied. We characterized an aldo‐keto reductase gene from Pseudomonas (PsAKR1) and rice (OsAKR1) and showed, by docking studies, both PsAKR1 and OsAKR1 can efficiently bind to glyphosate. Silencing AKR1 homologues in rice and Nicotiana benthamiana or mutation of AKR1 in yeast and Arabidopsis showed increased sensitivity to glyphosate. External application of AKR proteins rescued glyphosate‐mediated cucumber seedling growth inhibition. Regeneration of tobacco transgenic lines expressing PsAKR1 or OsAKRI on glyphosate suggests that AKR can be used as selectable marker to develop transgenic crops. PsAKR1‐ or OsAKRI‐expressing tobacco and rice transgenic plants showed improved tolerance to glyphosate with reduced accumulation of shikimic acid without affecting the normal photosynthetic rates. These results suggested that AKR1 when overexpressed detoxifies glyphosate in planta.     

Interactions of Chloride and Formate at the Donor and the Acceptor Side of Photosystem II

Chloride is required for the maximum activity of the oxygen evolving complex (OEC) while formate inhibits the function of OEC. On the basis of the measurements of oxygen evolution rates and the S₂ state multiline EPR signal, an interaction between the action of chloride and formate at the donor side of PS II has been suggested. Moreover, the Fe₂+Q–A EPR signals were measured to investigate a common binding site of both these anions at the PS II acceptor side. Other monovalent anions like bromide, nitrate etc. could influence the effects of formate to a small extent at the donor side of PS II, but not significantly at the acceptor side of PS II. The results presented in this paper clearly suggest a competitive binding of formate and chloride at the PS II acceptor side.     

Gender differences in predator induced pain perception in rats

Pain is an unpleasant sensation. It warns the living being about the impending damage to the tissues. The perception of pain is influenced by physical and psychological factors. The impact of chronic intermittent psychological stress on pain perception and the differences in antinociceptive responses have been studied in male and anestrous female albino rats. Fifteen rats in each group were subjected to psychological stress, by exposing them to their natural predator--cat, for a duration of 20 min daily for 12 consecutive days. Tail flick response latency to radiant heat was used as a measure to evaluate pain perception. It was observed that both the groups had a relatively high pain threshold at the beginning of exposure schedule due to the modulation of opioid analgesic system by the higher level of circulating testosterone in males and low level of estrogen in anaestrous females. However, the threshold for pain perception showed a gradually declining trend in both the groups over the next 11 days to reach the control values. This increase in sensitivity to pain or decreased pain threshold could be attributed to the phenomenon of habituation.