Population biology of grey gurnard (Eutrigla gurnardus (L.); Triglidae) in the coastal waters of Northwest Wales

The grey gurnard Eutrigla gurnardus (L.) has been identified by ICES as a potential commercial species in the NE Atlantic with recommendations made to derive information on population biology for stock assessment purposes. However, data on the population biology of this species is limited. In this study, data on the age, growth and maturity of grey gurnard were collected by otter trawling in the coastal waters of northwest Wales and Eastern Anglesey. Total length (TL) of fish sampled ranged between 2.1–33.0 cm (male) and 1.9–36.9 cm (female) with the majority of female (70.8%) fish between 11 and 20 cm TL and male fish (70.5%) between 11 and 18 cm TL. The percentage of fish >20 cm TL was larger for females (30.4%) compared to males (17.6%). Total weight (TW) for female and male grey gurnard in the stratified subsample ranged from 1.9 to 499.9 g for females and 2.1–390.0 g for males, with the majority of female (66.3%) and male (76.1%) fish between 10 and 60 g. TL/TW relations for male and female fish and both sexes combined were: TW = 0.006TL^3.07, TW = 0.007TL^3.03 and TW = 0.007TL^3.05 respectively. Age structure (based on otolith reading) ranged between 0.5 and 7.5 years old for females and 0.5 to 5.5 years old for male with the majority of female (41.7%) and male (46.0%) fish aged as 1.5 years old. The age structure of female and male grey gurnards was significantly different with the majority of older fish (>2.5 years) being female. The von Bertalanffy growth functions were calculated as L_t = 32.4[1 ? e^{?0.24(t + 1.41)}] for males, L_t = 45.9[1 ? e^{?0.16(t + 1.37)}] for females and L_t = 44.0[1 ? e^{?0.18(t + 1.20)}] for both sexes combined. Instantaneous rates of total mortality were similar for males and females and the combined Z value 1.00 year^?1 with the natural mortality rate estimated as 0.33 year^?1. The size at 50% maturity (L₅₀) was estimated to be 25.3 cm TL for males, females and for both sexes combined. Age at 50% maturity (A₅₀) was 3.2 years for both males and females. The results of this study provide the first information on the population biology of E. gurnardus in the Irish Sea, the first detailed study in the NE Atlantic since 1985 and helps to address the data gap identified by ICES in knowledge of the population biology of this species.     

Does the uniform packing of sand in a cylinder provide a uniform penetration resistance?

Sand packed to a constant dry bulk density, is frequently used as an artificial growth medium in which to simulate the effects of a constant mechanical impedance on root growth. This research aimed to determine whether conventional packing resulted in constant mechanical impedance and to test alternative packing regimes. Perspex cylinders 300 mm tall with a 49 mm internal diameter were packed with moist sand to uniform and varying bulk densities to examine which type of packing gave the greatest uniformity of penetration resistance (PR) with depth. The cylinders packed to a constant bulk density (1.48, 1.55, and 1.6 Mg m^-3) all had measured PR profiles which increased markedly with depth by approximately 1, 1.5 and 3 MPa, respectively, within the top 100 mm. Between 100–300 mm depth, these same cylinders showed reductions in PR of up to 1, 2 and 2 MPa respectively. These results show that sand packed to a constant bulk density with depth would not provide a uniform mechanical impedance to plant roots.By packing sand to different bulk densities at different depths, we obtained packed cylinders that had much more uniform PR profiles (with average values of 0.25, 1.40 and 2.30 MPa). Below a depth of 50 mm, the coefficients of variation for replicate cylinders packed in this way were 12%, 5% and 18% for the 0.25, 1.40, and 2.30 MPa treatments respectively. For experiments with single plants, the lower PR values that were unavoidable near to the surface (< 50 mm) can be avoided by sowing seeds at the base of a funnel inserted into the cylinder. Treatments such as these can provide reproducible growth media, with adequate water/nutrient and aeration status for the study of plant response to uniform mechanical impedance.     

Using Common Boundaries to Assess Methane Emissions: A Life Cycle Evaluation of Natural Gas and Coal Power Systems

There is consensus on the importance of upstream methane (CH₄) emissions to the life cycle greenhouse gas (GHG) footprint of natural gas systems, but inconsistencies among recent studies explain why some researchers calculate a CH₄ emission rate of less than 1% whereas others calculate a CH₄ emission rate as high as 10%. These inconsistencies arise from differences in data collection methods, data collection time frames, and system boundaries. This analysis focuses on system boundary inconsistencies. Our results show that the calculated CH₄ emission rate can increase nearly fourfold not by changing the magnitude of any particular emission source, but by merely changing the portions of the supply chain that are included within the system boundary. Our calculated CH₄ emission rate for extraction through pipeline transmission is 1.2% for current practices. Our model allows us to identify GHG contributors in the upstream supply chain, but also allows us to tie upstream findings to complete life cycle scenarios. If applied to the life cycles of power systems and assessed in terms of cumulative radiative forcing, the upstream CH₄ emission rate can be as high as 3.2% before the GHG impacts from natural gas power exceed those from coal power at any point during a 100‐year time frame.     

Probe signal correction for differential methylation hybridization experiments

Background  

Non-biological signal (or noise) has been the bane of microarray analysis. Hybridization effects related to probe-sequence composition and DNA dye-probe interactions have been observed in differential methylation hybridization (DMH) microarray experiments as well as other effects inherent to the DMH protocol.     

Species distribution and <Emphasis Type="Italic">in vitro</Emphasis> antifungal susceptibility of oral yeast isolates from Tanzanian HIV-infected patients with primary and recurrent oropharyngeal candidiasis

Background  

In Tanzania, little is known on the species distribution and antifungal susceptibility profiles of yeast isolates from HIV-infected patients with primary and recurrent oropharyngeal candidiasis.     

Mental practice-based rehabilitation training to improve arm function and daily activity performance in stroke patients: a randomized clinical trial

Background  

Over 50% of patients with upper limb paresis resulting from stroke face long-term impaired arm function and ensuing disability in daily life. Unfortunately, the number of effective treatments aimed at improving arm function due to stroke is still low. This study aims to evaluate a new therapy for improving arm function in sub-acute stroke patients based on mental practice theories and functional task-oriented training, and to study the predictors for a positive treatment result. It is hypothesized that a six-week, mental practice-based training program (additional to regular therapy) targeting the specific upper extremity skills important to the individual patient will significantly improve both arm function and daily activity performance, as well as being cost effective.     

Long-term platinum retention after treatment with cisplatin and oxaliplatin

Background  

The aim of this study was to evaluate long-term platinum retention in patients treated with cisplatin and oxaliplatin.     

Codon usage bias and the evolution of influenza A viruses. Codon Usage Biases of Influenza Virus

Background  

The influenza A virus is an important infectious cause of morbidity and mortality in humans and was responsible for 3 pandemics in the 20^th century. As the replication of the influenza virus is based on its host's machinery, codon usage of its viral genes might be subject to host selection pressures, especially after interspecies transmission. A better understanding of viral evolution and host adaptive responses might help control this disease.     

Genotoxic stress and cellular stress alter the subcellular distribution of human T-cell leukemia virus type 1 tax through a CRM1-dependent mechanism

Human T-cell leukemia virus type 1 Tax is a predominantly nuclear viral oncoprotein that colocalizes with cellular proteins in nuclear foci known as Tax speckled structures (TSS). Tax is also diffusely distributed throughout the cytoplasm, where it interacts with and affects the functions of cytoplasmic cellular proteins. Mechanisms that regulate the distribution of Tax between the cytoplasm and nucleus remain to be identified. Since Tax has been shown to promote genome instability by perturbing cell cycle progression and DNA repair mechanisms following DNA damage, we examined the effect of genotoxic stress on the subcellular distribution and interacting partners of Tax. Tax localization was altered in response to various forms of cellular stress, resulting in an increase in cytoplasmic Tax and a decrease in Tax speckled structures. Concomitantly, colocalization of Tax with sc35 (a TSS protein) decreased following stress. Tax translocation required the CRM1 nuclear export pathway, and a transient interaction between Tax and CRM1 was observed following stress. These results suggest that the subcellular distribution of Tax and the interactions between Tax and cellular proteins respond dynamically to cellular stress. Changes in Tax distribution and interacting partners are likely to affect cellular processes that regulate cellular transformation.     

Prophylactic and therapeutic targeting of the neurokinin-1 receptor limits neuroinflammation in a murine model of pneumococcal meningitis

There is increasing evidence that the tachykinin substance P (SP) can augment inflammatory immune responses within the CNS. We have recently demonstrated that resident CNS cells express high-affinity receptors for this neuropeptide (neurokinin-1 receptors [NK-1R]), and we have shown that SP can significantly augment glial inflammatory responses to clinically relevant Gram-negative bacteria. Furthermore, we provided evidence that endogenous SP/NK-1R interactions are an essential component in the initiation and/or progression of CNS inflammation following in vivo exposure to these pathogens. In this study, we demonstrate that SP similarly enhances inflammatory glial responses to the major Gram-positive causative agent of bacterial meningitis, Streptococcus pneumoniae, and show that endogenous SP/NK-1R interactions play a critical role in the development of CNS inflammation in an in vivo model of pneumococcal meningitis. Importantly, we provide the first demonstration, to our knowledge, that pharmacological targeting of the NK-1R not only prevents the development of damaging inflammation when administered prophylactically, but can also limit or reverse neuroinflammation associated with an established streptococcal CNS infection when delivered therapeutically. We show that an NK-1R antagonist attenuates increases in CNS inflammatory cytokine levels and decreases in immunosuppressive cytokine production associated with an ongoing S. pneumoniae infection. Furthermore, we demonstrate that such a therapeutic intervention reverses infection-associated gliosis and demyelination in the absence of changes in CNS bacterial burden. Together, these results suggest that targeting SP/NK-1R interactions is a strategy worthy of further study for the treatment of microbially induced neuroinflammation.