Compositional heterogeneity of the Escherichia coli genome: A role for VSP repair?

E. coli genes that contain a high frequency of the tetranucleotide CTAG are also rich in the tetramers CTTG, CCTA, CCAA, TTGG, TAGG, and CAAG (group-I tetramers). Conversely, E. coli genes lacking CTAG are rich in the tetranucleotides CCTG, CCAG, CTGG, and CAGG (group-II tetramers). These two gene samples differ also in codon usage, amino acid composition, frequency of Dcm sites, and contrast vocabularies. Group-I tetramers have in common that they are depleted by very-short-patch repair (VSP), while group-II tetramers are favored by VSP activity. The VSP system repairs G:T mismatches to G:C, thereby increasing the overall G+C content of the genome; for this reason the CTAG-rich sample has a lower G+C content than the CTAG-poor sample. This compositional heterogeneity can be tentatively explained by a low level of VSP activity on the CTAG-rich sample. A negative correlation is found between the frequency of group-I tetramers and the level of gene expression, as measured by the Codon Adaptation Index (CAI). A possible link between the rate of VSP activity and the level of gene expression is considered.Correspondence to: A. Marine     

Étude d'un extrait de Sporothrix schenckii (forme levure). Analyse électrophorétique et immunoélectrophorétique; caracterisation des activités enzymatiques

Résumé Un extrait de S. schenckii a été préparé à partir de levures vivantes provenant d'une culture agitée pendant 3 jours à 35° C et à l'obscurité dans du milieu BHI (brain heart infusion). Il a été obtenu par broyage au broyeur cellulaire MSK et amélioré par une congélation-décongélation. Ses constituants, séparés par électrophorèse, ont été révélés par leur activité enzymatique; 30 bandes ont ainsi pu être caractérisées. Ces activités enzymatiques ont été recherchées au niveau des fractions de l'extrait révélées par un hyperimmunsérum de lapin: 16 sur les 22 précipités sont identifiés par leur pouvoir catalytique. L'ordre d'apparition des premiers anticorps chez le lapin immunisé et leur identification complètent cette étude. Les conditions de culture et de préparation permettant d'améliorer la qualité de l'extrait sont également précisées.

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An extract from living yeast forms of S. schenckii was prepared. The yeasts originated from a shake culture in B.H.I. broth (Difco) incubated for 3 days at 35°C in darkness; they were harvested, washed and disrupted with glass beads in a model MSK Braun mechanical cell homogenizer; a freezing-thawing was added to improve the extract.After electrophoretic separation in agarose gel, the extract's components were characterized by their enzymic activity; with this technique, 30 bands were revealed. These enzymic activities were also investigated on the antigenic fractions of the extract revealed by a rabbit hyperimmunserum: 16 among 22 immunoprecipitates are identified by their catalytic properties. Study of the earliest precipitating antibodies (appearing-order and enzymic caracterization) in rabbits just immunized completes this work. How to ameliorate the quality of the extract by culture and extraction conditions is also specified.

     

Gain of function of mutant p53 by coaggregation with multiple tumor suppressors

Many p53 missense mutations possess dominant-negative activity and oncogenic gain of function. We report that for structurally destabilized p53 mutants, these effects result from mutant-induced coaggregation of wild-type p53 and its paralogs p63 and p73, thereby also inducing a heat-shock response. Aggregation of mutant p53 resulted from self-assembly of a conserved aggregation-nucleating sequence within the hydrophobic core of the DNA-binding domain, which becomes exposed after mutation. Suppressing the aggregation propensity of this sequence by mutagenesis abrogated gain of function and restored activity of wild-type p53 and its paralogs. In the p53 germline mutation database, tumors carrying aggregation-prone p53 mutations have a significantly lower frequency of wild-type allele loss as compared to tumors harboring nonaggregating mutations, suggesting a difference in clonal selection of aggregating mutants. Overall, our study reveals a novel disease mechanism for mutant p53 gain of function and suggests that, at least in some respects, cancer could be considered an aggregation-associated disease.     

徐闻西岸造礁石珊瑚的组成及空间分布

2008年5-6月在徐闻西岸设置了25个站点,运用截线样带法调查了造礁石珊瑚的种类多样性和空间分布.本次研究共发现造礁石珊瑚57种,每个站位的种类数均不超过30种.Shannon-Wiener多样性指数和Pielou均匀度指数均值分别为1.79和0.42.二异角孔珊瑚(Goniopora duofasciata)、盾形...     

菲律宾海北部底质沉积中的深海介形类

对琉球群岛东侧的菲律宾海北部海区(27.0°-30.0°N,129.5°-135.5°E)水深1 666 m至6 616 m的123个表层沉积物样品进行了定量微体古生物学研究.仅在38个样品中发现介形类,主要分布在4 000 m以浅水深区.初步鉴定有21属35种,其中Krithe在样品中的出现率和丰度最高,其次常见的还...     

再论假裸枝叠层石科*

内蒙古桌子山地区中奥陶统公乌素组遗迹化石十分丰富.本文共鉴定、描述14个遗迹属、17个遗迹种,其中1新遗迹属——Biscopulatichnus、4新遗种和6未定种.并根据不同遗迹属在不同层位中的相对丰度,建立了4个遗迹组合,自下而上的顺序是:1. Taenidium-Phycodes 组合;2. Volkichnium 组合;3. Helminthopsis 组合;4. Granularia-Circulichnus 组合,大致相当于 Seilacher (1967) 的 Zoophycos 遗迹相,反映出公乌素组沉积期,水体较深且宁静、缺氧、有机质含量高,推测应为大陆斜坡环境.     

中国外来海洋生物及其影响

到目前为止,我国已从国外引进了鱼类10种、虾类2种、贝类9种、棘皮动物1种、藻类4种进行海水养殖;引进了抗盐植物2种进行盐碱地栽培;海洋水族馆业的发展,引进了数百种观赏性海洋生物;航运业中的船体附着及压舱水排放,无意中带入了几百种外来海洋生物。首先,外来海洋入侵生物与土著海洋生物争夺生存空间与食物,危害我国土著海洋生物的生存。其次,海洋外来生物通过与亲缘关系接近的物种进行杂交,降低我国海洋土著生物的遗传质量,造成遗传污染。再次,外来海洋生物可能带来病原生物,对海洋生态环境造成巨大的危害。此外,近些年来,我国沿海赤潮越来越严重,其重要原因之一是外来生存能力较强的赤潮生物的危害。     

Fundulus heteroclitus卵子的发育能力的研究

以实验的方法来研究 Fundulus heteroclitus 卵子分裂球的发育能力,最早的工作是 Morgan 1893和1895年的报告。他在2细胞时期,用针穿破卵膜,刺死一个分裂球。针抽出后,轻轻的抑压卵膜,挤出刺死的分裂球的细胞质,但不损伤下面的卵黄。经过这样手术以后,遗留在膜内的分裂球能继续发育。68个卵子中,20个左右在胚胎形成前死亡,其余都能继续发育,成为正常的胚胎。胚胎的身体一般比正常的小,比正常的二分之一来得大。Morgan 在他1893年的论文中,认为去掉一半分裂球的卵子,发育成为大于二分之一胚胎的原因,是留存的细胞质多于二分之一的结果。因在2细胞时期,