Tooth morphogenesis and ameloblast differentiation are regulated by micro-RNAs

Teeth form as appendages of the ectoderm and their morphogenesis is regulated by tissue interactions mediated by networks of conserved signal pathways. Micro-RNA (miRNA) pathway has emerged as important regulator of various aspects of embryonic development, but its function in odontogenesis has not been elucidated. We show that the expression of RNAi pathway effectors is dynamic during tooth morphogenesis and differentiation of dental cells. Based on microarray profiling we selected 8 miRNAs expressed during morphogenesis and 7 miRNAs in the incisor cervical loop containing the stem cell niche. These miRNAs were mainly expressed in the dental epithelium. Conditional deletion of Dicer-1 in the epithelium (Dcr^K14−/−) resulted in rather mild but significant aberrations in tooth shape and enamel formation. The cusp patterns of the Dcr^K14−/− molar crowns resembled the patterns of both ancestral muroid rodents and mouse mutants with modulated signal pathways. In the Dcr^K14−/− incisors, longitudinal grooves formed on the labial surface and these were shown to result from ectopic budding of the progenitor epithelium in the cervical loop. In addition, ameloblast differentiation was impaired and resulted in deficient enamel formation in molars and incisors. To help the identification of candidate target genes of the selected tooth enriched miRNAs, we constructed a new ectodermal organ oriented database, miRTooth. The predicted targets of the selected miRNAs included several components of the main morphogenetic signal pathways regulating tooth development. Based on our findings we suggest that miRNAs modulate tooth morphogenesis largely by fine tuning conserved signaling networks and that miRNAs may have played important roles during tooth evolution.     

Penicillin‐binding protein folding is dependent on the PrsA peptidyl‐prolyl cis‐trans isomerase in Bacillus subtilis

The PrsA protein is a membrane‐anchored peptidyl‐prolyl cis‐trans isomerase in Bacillus subtilis and most other Gram‐positive bacteria. It catalyses the post‐translocational folding of exported proteins and is essential for normal growth of B. subtilis. We studied the mechanism behind this indispensability. We could construct a viable prsA null mutant in the presence of a high concentration of magnesium. Various changes in cell morphology in the absence of PrsA suggested that PrsA is involved in the biosynthesis of the cylindrical lateral wall. Consistently, four penicillin‐binding proteins (PBP2a, PBP2b, PBP3 and PBP4) were unstable in the absence of PrsA, while muropeptide analysis revealed a 2% decrease in the peptidoglycan cross‐linkage index. Misfolded PBP2a was detected in PrsA‐depleted cells, indicating that PrsA is required for the folding of this PBP either directly or indirectly. Furthermore, strongly increased uniform staining of cell wall with a fluorescent vancomycin was observed in the absence of PrsA. We also demonstrated that PrsA is a dimeric or oligomeric protein which is localized at distinct spots organized in a helical pattern along the cell membrane. These results suggest that PrsA is essential for normal growth most probably as PBP folding is dependent on this PPIase.     

Vitamin D Status during Pregnancy and the Risk of Subsequent Postpartum Depression: A Case-Control Study

Epidemiological studies have provided evidence of an association between vitamin D insufficiency and depression and other mood disorders, and a role for vitamin D in various brain functions has been suggested. We hypothesized that low vitamin D status during pregnancy might increase the risk of postpartum depression (PPD). The objective of the study was thus to determine whether low vitamin D status during pregnancy was associated with postpartum depression. In a case-control study nested in the Danish National Birth Cohort, we measured late pregnancy serum concentrations of 25[OH]D3 in 605 women with PPD and 875 controls. Odds ratios [OR) for PPD were calculated for six levels of 25[OH]D3. Overall, we found no association between vitamin D concentrations and risk of PPD (p = 0.08). Compared with women with vitamin D concentrations between 50 and 79 nmol/L, the adjusted odds ratios for PPD were 1.35 (95% CI: 0.64; 2.85), 0.83 (CI: 0.50; 1.39) and 1.13 (CI: 0.84; 1.51) among women with vitamin D concentrations < 15 nmol/L, 15–24 nmol/L and 25–49 nmol/L, respectively, and 1.53 (CI: 1.04; 2.26) and 1.89 (CI: 1.06; 3.37) among women with vitamin D concentrations of 80–99 nmol/L and ≥ 100 nmol/L, respectively. In an additional analysis among women with sufficient vitamin D (≥ 50 nmol/L), we observed a significant positive association between vitamin D concentrations and PPD. Our results did not support an association between low maternal vitamin D concentrations during pregnancy and risk of PPD. Instead, an increased risk of PPD was found among women with the highest vitamin D concentrations.     

Do physical plant litter traits explain non‐additivity in litter mixtures? A test of the improved microenvironmental conditions theory

The decomposition rates of plant litter mixtures often deviate from the averaged rates of monocultures of their component litter species. The mechanisms behind these non‐additive effects in decomposition of litter mixtures are lively debated. One plausible explanation for non‐additive effects is given by the improved microenvironmental condition (IMC) theory. According to this theory, plant litter species, whose physical characteristics improve the microclimatic conditions for decomposers, will promote the decomposition of their co‐occurring litter species. We tested the IMC theory in relation to leaf litter and soil moisture in two contrasting moisture conditions in a dry subarctic mountain birch forest with vascular plant leaf litters of poor and high quality. The non‐additive effects in mass loss of litter mixtures increased when moisture conditions in litter and soil became more favourable for plant litter decomposition. The sign of this increase (antagonistic or synergistic) in non‐additive effects was more predictable for litter mixtures of poor litter quality. Although the specific mechanisms underlying the IMC theory depended on the litter quality of the litter mixtures, a standardized water holding capacity (WHC) was the litter trait most closely related to the non‐additive effects in mixtures of both poor and high quality litter types. Furthermore, we found that higher dissimilarity in WHC traits between the component litter species in a mixture increased synergistic effects in litter mixtures under limiting moisture conditions. However, under improved moisture conditions, increased antagonistic effects were observed. Thus, we found clear support for the IMC theory and showed that climatic conditions and leaf litter physical traits determine whether the non‐additive effects in litter mixtures are antagonistic or synergistic. Our study emphasizes the need to include litter physical traits into predictive models of mixing effects on plant litter decomposition and in general suggests climate specificity into these models.     

The ontogeny of the lower reproductive tract of the landsnail Helix aspersa (Gastropoda: Mollusca)

We provide a size-based ontogenetic sequence of the development and differentiation of the lower reproductive tract of the heterobranch gastropod Helix aspersa (Müller 1774). Twelve development stages distributed among nine size classes were recognized based on readily visible changes in morphology and changes in tissue density. Geometric morphometrics was used to calculate the deformation between stages as represented by thin-plate spline bending energies. The developmental stages and sequence of developmental events are also compared to previously published scenarios for the evolution of stylommatophoran and other pulmonate reproductive tracts. These comparisons suggest that heterochronies, which include both acceleration and retardation, are operating in the morphological evolution of the pulmonate lower reproductive tract. This supports previous observations that largest number of developmental changes coincides with the transition to sexual maturity, which is also seen in the exponential curve of bending energies we observed in Helix aspersa. The belated organogenesis makes the ontogeny of the complex hermaphroditic reproductive system of pulmonates readily observable in size-friendly juveniles. This observation, coupled with the ease of raising individuals in the laboratory, recommends Helix aspersa as a potential model laboratory system for investigating molluscan evolutionary development.     

Local and systemic oxidant/antioxidant status before and during lung cancer radiotherapy

To examine local and systemic oxidative status of lung cancer (LC) and oxidant effects of radiotherapy (RT), this study evaluated antioxidants and markers of oxidative and nitrosative stress in bronchoalveolar lavage (BAL) fluid and in the blood of 36 LC patients and 36 non-cancer controls at baseline and during and after RT for LC. LC patients had higher baseline serum urate, plasma nitrite and lower serum oxidized proteins than controls (p=0.016, p<0.001 and p=0.027, respectively), but BAL fluid oxidative stress markers were similar. RT tended to raise some antioxidants, however, significant increases were seen in serum urate, conjugated dienes and TBARS (p=0.044, p=0.034 and p=0.004, respectively) 3 months after RT. High urate at baseline may compensate against the oxidative stress caused by LC. RT shifts the oxidant/antioxidant balance towards lipid peroxidation, although the antioxidant defense mechanisms of the body appear to counteract the increased oxidative stress rather effectively.     

Mutational and biochemical analysis of the DNA-entry nuclease EndA from Streptococcus pneumoniae

EndA is a membrane-attached surface-exposed DNA-entry nuclease previously known to be required for genetic transformation of Streptococcus pneumoniae. More recent studies have shown that the enzyme also plays an important role during the establishment of invasive infections by degrading extracellular chromatin in the form of neutrophil extracellular traps (NETs), enabling streptococci to overcome the innate immune system in mammals. As a virulence factor, EndA has become an interesting target for future drug design. Here we present the first mutational and biochemical analysis of recombinant forms of EndA produced either in a cell-free expression system or in Escherichia coli. We identify His160 and Asn191 to be essential for catalysis and Asn182 to be required for stability of EndA. The role of His160 as the putative general base in the catalytic mechanism is supported by chemical rescue of the H160A variant of EndA with imidazole added in excess. Our study paves the way for the identification and development of protein or low-molecular-weight inhibitors for EndA in future high-throughput screening assays.     

Improved Artificial Saliva for Studying the Cariogenic Effect of Carbohydrates

Saliva is a complex fluid that possesses many important functions regarding oral health. Many in vitro studies require relatively large quantities of saliva. While natural saliva would be the material of choice, it is difficult to obtain in sufficient quantities and varies in composition. Substitutes mimicking the physicochemical properties of saliva have been developed, but these are not appropriate to study the growth of mutans streptococci. Brain Heart Infusion (BHI) has been commonly used for this, but this medium is richer in nutrients than saliva. We therefore developed artificial saliva (AS) with nutrient levels resembling those in natural saliva as a substitute for natural human saliva (HS) to study the influence of different carbon sources on mutans streptococci growth. Growth of a wild-type Streptococcus mutans strain and S. mutans ATCC 15175 in BHI, HS, and AS was monitored anaerobically. Growth of S. mutans in the modified AS was very similar to the growth in HS, both in the absence and presence of different carbon sources. We therefore conclude that the developed AS is suitable for in vitro tests on S. mutans growth.     

Rhizosphere effect and fine-root morphological adaptations in a chronosequence of silver birch stands on reclaimed oil shale post-mining areas

Mining activities create wastelands that require reclamation. The relief of abandoned opencast oil shale mining area is rugged, and the mining spoil is extremely stony and alkaline (pH 8), with low N and organic content. Planting of fast-growing deciduous tree species such as silver birch (Betula pendula) on post-mining area is the best means to accelerate the development of a new forest ecosystem in such harsh conditions. A chronosequence of silver birch stands (1, 2, 3, 5, 29, 40 years old) was investigated to reveal changes in bulk soil (S) and rhizosphere (R) properties, in rhizosphere effect on bacterial activity and diversity, and in fine-root morphological adaptations in relation to stand development. The rhizosphere effect on bacterial activity was measured as a rhizosphere/soil (R/S) ratio and on species diversity as a similarity (%) between rhizosphere and bulk soil bacterial communities. Bacterial species diversity was determined by denaturing gradient gel electrophoresis (DGGE) technique and was expressed as Shannon diversity index. Biolog EcoPlates were used to determine the summed activity of cultivable bacteria in rhizosphere and bulk soil. Short-root morphological parameters were measured using WinRHIZO™ Pro.Soil pH and available P concentration decreased logarithmically, and N% and organic matter concentration increased linearly with increasing stand age. During the first 30 years of stand development SIR increased an order, from 0.18 to 1.90 mg C g⁻¹. Bulk soil bacterial diversity increased logarithmically with stand age. The bacterial diversity was higher in rhizosphere than in bulk soil. Rhizosphere effect on bacterial activity was low a year after planting, increased more than two times in the next 2 years, and decreased thereafter rapidly with stand age. Rhizosphere effect, indicating plant support to rhizosphere microbial communities, was highest when soil conditions were still poor, but trees had already overcome the transplant shock. All short-root morphological parameters showed certain trends with age. Specific short-root length varied between 56 and 313 m g⁻¹ and decreased logarithmically with stand age and soil improvement. The fastest changes in short-root morphology, rhizosphere effect, and soil pH occurred during the early development of silver birch stands - in the first 5 years; P nutrition and N use efficiency improved simultaneously. Rhizosphere effect and short-root morphological adaptation have an important role in soil and stand development on oil shale post-mining area, and silver birch is a promising tree species for reclamation of alkaline mining spoil.