Patch-specific spawning is linked to restoration of a sediment-disturbed lowland river,south-eastern Australia

Landscape-scale, terrestrial modifications of catchments can increase river sediment loads. In some rivers, the development of ‘sand-slugs’ (i.e. discrete slugs of travelling sand particles) subsequently alters habitat structure with links to declines in regional fish diversity. Increasingly, river channel restoration is being used to conserve biodiversity in sediment-disturbed rivers, but there are few examples to guide restoration efforts. In particular, few studies examine the effect of restoration on ecological processes such as spawning. We report on a trial restoration procedure, consisting of sediment extraction and woody debris replacement undertaken in two 1500 m reaches of the Glenelg River, south-eastern Australia. We aimed to examine the association between reach-scale restoration and fish spawning, predicting that reconstructed channel types (pools and runs) would be used more frequently than corresponding un-modified channel types for spawning. Artificial (polyvinylchloride (PVC) tubes) and natural (small woody debris) spawning substrates were used to examine the association of fish spawning with reach and channel type. Restoration increased wood volume, but only increased average run depth at one reach. Species including Gadopsis marmoratus, Philypnodon grandiceps, Hypseleotris spp., Nannoperca variegata and Cherax destructor were observed within spawning substrates, but only P. grandiceps frequently spawned on PVC tubes and sparsely on small woody debris substrates. Spawning frequency varied between reach and channel types, with pools in both restored and un-manipulated reaches used more frequently than runs. Restored pools were less frequently used than un-manipulated pools, but restored runs were used up to 6 times more frequently than un-manipulated runs, indicating that restoration of the shallowest parts of the channel increased spawning opportunities for P. grandiceps. This type of channel restoration may facilitate ecological processes that underpin the persistence of riverine fish populations.     

Chronic hyperhomocysteinemia impairs vascular function in ovariectomized rat carotid arteries

Homocysteine is an independent risk factor for coronary heart disease, as well as for cerebrovascular and peripheral vascular diseases. The purpose of this study was to investigate the effects of hyperhomocysteinemia (HHcy) on vascular reactivity within carotid artery segments isolated from ovariectomized female rats. Treatment with dl-Hcy thiolactone (1 g/kg body weight per day) reduced the phenylephrine-induced contraction of denuded rings. However, the treatment did not alter KCl-induced contractions, or relaxations induced by sodium nitroprusside or acetylcholine. We report elevated expressions of iNOS, eNOS, and nitrotyrosine in homocysteine-treated rat artery sections. Moreover, the inhibition of NOS by l-NAME, 1,400 W, or l-NNA restored phenylephrine-induced vasoconstriction in carotid artery segments from Hcy-treated rats. In conclusion, our findings show that severe HHCy can promote an acute decrease in the endothelium-independent contractile responses of carotid arteries to adrenergic agonists. This effect was restored by nitric oxide synthase inhibitors, which further supports the involvement of nitric oxide in HHcy-derived vascular dysfunction.     

Imbalance between matrix metalloproteinases and tissue inhibitor of metalloproteinases in hypertensive vascular remodeling

Structural vascular changes in two-kidney, one-clip (2K-1C) hypertension may result from increased matrix metalloproteinase (MMP)-2 activity. MMP-2 activation is regulated by other MMPs, including transmembrane-MMPs, and by tissue inhibitors of MMPs (TIMPs). We have investigated the localization of MMP-2, -9, -14, and TIMPs 1–4 in hypertensive aortas and measured their levels by zymography/Western blotting and immunohistochemistry. Gelatinolytic activity was assayed in tissues by in situ zymography. Sham-operated and 2K-1C hypertensive rats were treated with doxycycline (or vehicle) for 8 weeks, and the systolic blood pressure was monitored weekly. Doxycycline attenuated 2K-1C hypertension (165 ± 11.7 mmHg versus 213 ± 7.9 mm Hg in hypertensive controls, P < 0.01), and completely prevented increase in the thicknesses of the media and the intima in 2K-1C animals (P < 0.01). Increased amounts of MMP-2, -9, and -14 were found in hypertensive aortas, as well as enhanced gelatinolytic activity. A gradient in the localization of MMP-2, -9, and -14 was found, with increased amounts detected in the intima, at sites with higher gelatinolytic activity. Doxycycline attenuated hypertension induced increases in all the 3 investigated MMPs in both the media and the intima (all P < 0.05), but it did not change the amounts of TIMPs 1–4 (P > 0.05). Therefore, an imbalance between increased amounts of MMPs at the tissue level without a corresponding increase in the quantities of TIMPs, particularly in the intima and inner media layers, appears to account for the increased proteolytic activity found in 2K-1C hypertension-induced maladaptive vascular remodeling.     

Dietary omega-3 fatty acids attenuate cellular damage after a hippocampal ischemic insult in adult rats

The role of omega-3 polyunsaturated fatty acids (3PUFAs) on brain function is increasingly demonstrated. Here, the effect of dietary deprivation of essential 3PUFAs on some parameters related to neuroprotection was investigated. Rats were fed with two different diets: omega-3 diet and omega-3-deprived diet. To assess the influence of 3PUFAs on brain responses to ischemic insult, hippocampal slices were subjected to an oxygen and glucose deprivation (OGD) model of in vitro ischemia. The omega-3-deprived group showed higher cell damage and stronger decrease in the [³H]glutamate uptake after OGD. Moreover, omega-3 deprivation influenced antiapoptotic cell response after OGD, affecting GSK-3beta and ERK1/2, but not Akt, phosphorylation. Taken together, these results suggest that 3PUFAs are important for cell protection after ischemia and also seem to play an important role in the activation of antiapoptotic signaling pathways.     

In vitro effects of silver nanoparticles on the mitochondrial respiratory chain

Silver has been used for years in medicine; it has known antimicrobial properties. Additionally, silver has been used in water and air filtration to eliminate microorganisms, and, more recently, as a biocide to prevent infections in burns. In contact with the human body, nanoparticles can elicit a spectrum of tissue responses such as the generation of reactive oxygen species, decreased function of mitochondria and even cell death. Mitochondries are intracellular organelles that play a crucial role in ATP production. In the present work, we evaluate the in vitro effect of silver nanoparticles (AgN) on the activities of mitochondrial respiratory chain complexes from the brain, skeletal muscle, heart, and liver of rats. Our results demonstrated that AgN (10, 25, and 50 mg l^?1) decreases the activity of mitochondrial respiratory chain complexes I, II, III, and IV from all tissues.     

<Emphasis Type="Italic">ABCB1</Emphasis> single nucleotide polymorphisms in the Brazilian population

The ABCB1/MDR-1 gene, which encodes P-glycoprotein, is highly polymorphic. We analyzed 278 healthy Brazilian individuals through PCR–RFLP to identify ABCB1 variants and determine the genotypic and allelic frequencies. Genotypic frequencies for C1236T (rs1128503) were 0.31 for CC, 0.60 for CT and 0.09 for TT and allelic frequencies were 0.61 and 0.39 for C and T, respectively. Genotypic frequencies for C3435T (rs1045642) were 0.24 for CC, 0.61 for CT and 0.15 for TT, and allelic frequencies were 0.55 and 0.45 for C and T, respectively. Both variants showed significant differences in genotypic frequencies for both studied regions. Gender comparisons did not show significant differences between genotypes at both sites. Significant differences were observed between C1236C and C3435T and also C1236C and C3435C. Comparisons between ABCB1 polymorphisms in Brazilians and other populations show significant differences. The understanding of the effects of several drugs associated to these variants may help an individualized treatment in clinical practice.     

Urban Pigeons (<Emphasis Type="Italic">Columba livia</Emphasis>) as a Potential Source of Pathogenic Yeasts: A Focus on Antifungal Susceptibility of <Emphasis Type="Italic">Cryptococcus</Emphasis> Strains in Northeast Brazil

To investigate pigeons as a potential source of pathogenic yeast species, 47 samples of pigeon droppings and 322 samples from pigeon cloacae were evaluated. The samples were also collected from trees located near the pigeon habitats, in the city of Fortaleza, Ceará, Northeast Brazil. In addition, we evaluated the in vitro antifungal susceptibility of these environmental Cryptococcus strains to amphotericin B, azoles and caspofungin. C. neoformans var. neoformans (n = 10), C. laurentii (n = 3), Candida spp. (n = 14), Rhodotorula mucilaginosa (n = 6) and Trichosporon sp. (n = 3) were isolated from pigeon droppings. In contrast, only Candida spp. (n = 4), Trichosporon sp. (n = 3) and R. mucilaginosa (n = 2) were recovered from cloacae specimens. Only Candida glabrata (n = 1) was recovered from plant samples. Azole resistance was detected in only one environmental strain of Cryptococcus, which was resistant to itraconazole (MIC = 1 μg/ml). As expected, all Cryptococcus strains were resistant to caspofungin. In summary, the present study confirms that urban pigeons are a potential source of Cryptococcus spp. and other pathogenic yeasts. Additionally, antifungal resistance was observed in one environmental strain of Cryptococcus neoformans var. neoformans in Northeast Brazil.     

Nucleosome-interacting proteins regulated by DNA and histone methylation

Modifications on histones or on DNA recruit proteins that regulate chromatin function. Here, we use nucleosomes methylated on DNA and on histone H3 in an affinity assay, in conjunction with a SILAC-based proteomic analysis, to identify "crosstalk" between these two distinct classes of modification. Our analysis reveals proteins whose binding to nucleosomes is regulated by methylation of CpGs, H3K4, H3K9, and H3K27 or a combination thereof. We identify the origin recognition complex (ORC), including LRWD1 as a subunit, to be a methylation-sensitive nucleosome interactor that is recruited cooperatively by DNA and histone methylation. Other interactors, such as the lysine demethylase Fbxl11/KDM2A, recognize nucleosomes methylated on histones, but their recruitment is disrupted by DNA methylation. These data establish SILAC nucleosome affinity purifications (SNAP) as a tool for studying the dynamics between different chromatin modifications and provide a modification binding "profile" for proteins regulated by DNA and histone methylation.     

Effect of Biostimulation and Bioaugmentation on Degradation of Polyurethane Buried in Soil

This work investigated biostimulation and bioaugmentation as strategies for removing polyurethane (PU) waste in soil. Soil microcosms were biostimulated with the PU dispersion agent “Impranil” and/or yeast extract or were bioaugmented with PU-degrading fungi, and the degradation of subsequently buried PU was determined. Fungal communities in the soil and colonizing buried PU were enumerated on solid media and were analyzed using denaturing gradient gel electrophoresis (DGGE). Biostimulation with yeast extract alone or in conjunction with Impranil increased PU degradation 62% compared to the degradation in untreated control soil and was associated with a 45% increase in putative PU degraders colonizing PU. Specific fungi were enriched in soil following biostimulation; however, few of these fungi colonized the surface of buried PU. Fungi used for soil bioaugmentation were cultivated on the surface of sterile wheat to form a mycelium-rich inoculum. Wheat, when added alone to soil, increased PU degradation by 28%, suggesting that wheat biomass had a biostimulating effect. Addition of wheat colonized with Nectria haematococca, Penicillium viridicatum, Penicillium ochrochloron, or an unidentified Mucormycotina sp. increased PU degradation a further 30 to 70%, suggesting that biostimulation and bioaugmentation were operating in concert to enhance PU degradation. Interestingly, few of the inoculated fungi could be detected by DGGE in the soil or on the surface of the PU 4 weeks after inoculation. Bioaugmentation did, however, increase the numbers of indigenous PU-degrading fungi and caused an inoculum-dependent change in the composition of the native fungal populations, which may explain the increased degradation observed. These results demonstrate that both biostimulation and bioaugmentation may be viable tools for the remediation of environments contaminated with polyurethane waste.The polyester polyurethanes (PU) are a diverse group of synthetic polymers with many industrial and commercial applications, including insulating and packaging foams, fibers, fabrics, and synthetic leather goods (20). These polymers contain intramolecular bonds analogous to those found in biological macromolecules (such as ester and urethane linkages), making them susceptible to enzymatic degradation and assimilation by environmental microbial communities (17, 42). The susceptibility of plastics to biodegradation is of increasing importance as the generation of plastic waste material continues to increase and plastics now comprise more than 30% of household waste in the United States (32). By exploiting the biodegradability of plastics such as PU, bioremediation by microorganisms in the environment shows great potential for reducing the burden of plastic waste.Although the diversity of natural microbial populations often means that the potential for waste remediation exists at polluted sites, factors such as absence of electron acceptors or donors, low nitrogen or phosphorus availability, or a lack of induction of the metabolic pathways responsible for degradation can inhibit waste remediation. In these cases, addition of exogenous nutrients can enhance the degradation of waste, a process known as biostimulation. Biostimulation of in situ microbial communities has been used to enhance the degradation of crude oil (22, 29), tetrachloroethene (19), diesel fuel (24, 28), and polyaromatic hydrocarbons (41).If communities native to polluted sites lack significant populations of waste degraders, microbes with the desired phenotypes can be added exogenously in a process known as bioaugmentation. This approach has been successfully used to remediate a wide range of waste products, from hydrocarbons (8, 34) to heavy metals (15, 16). Numerous PU-degrading organisms have been isolated from a range of environments (6, 9, 26, 30), and this has provided a large reservoir of organisms for potential bioaugmentation of PU waste.This study was the first study to assess the potential of biostimulation and bioaugmentation as methods for accelerating the degradation of PU waste in the environment. The response of fungal communities in soil microcosms to (i) addition of nutrients or (ii) a large influx of PU-degrading fungi was investigated using culture-based and molecular techniques, and the effect of these treatments on the degradation of PU coupons buried in these microcosms was determined.