以疏勒河流域为例的“山水林田湖草”生态修复多尺度耦合框架及方法

为解决过去保护修复工程只考虑单要素、单一类型生态系统的问题,我国于2016年开展了“山水林田湖草”生态修复工程,旨在通过整体、系统、综合的方法对各类生态系统进行统筹治理。然而,目前的工程治理中仍然存在对系统内部及系统间耦合概念理解不充分、系统耦合机制不明晰、对“尺度”的关注不足、缺少科学的分析方法等问题,制约了保护修复的成效。对此,首先将多个尺度下的耦合研究方法进行归纳总结,并以国家重点冰川水源涵养区及生物多样性保护优先区——疏勒河流域为例,将耦合方法用于分析要素间、自然生态系统间的耦合关系,最后基于该实例研究,提出多尺度耦合分析框架与“升尺度”保护修复模式,以期帮助相关决策者明晰“山水工程”中要素、系统间的耦合关系,增强治理的科学性与有效性,进而推进我国社会与环境的可持续发展。     

Modified nucleosides and the chromatographic and aminoacylation behavior of tRNA(Ile) from Escherichia coli C6

Transfer RNA from Escherichia coli C6, a Met-, Cys-, relA- mutant, was previously shown to contain an altered tRNA(Ile) which accumulates during cysteine starvation (Harris, C.L., Lui, L., Sakallah, S. and DeVore, R. (1983) J. Biol. Chem. 258, 7676-7683). We now report the purification of this altered tRNA(Ile) and a comparison of its aminoacylation and chromatographic behavior and modified nucleoside content to that of tRNA(Ile) purified from cells of the same strain grown in the presence of cysteine. Sulfur-deficient tRNA(Ile) (from cysteine-starved cells) was found to have a 5-fold increased Vmax in aminoacylation compared to the normal isoacceptor. However, rates or extents of transfer of isoleucine from the [isoleucyl approximately AMP.Ile-tRNA synthetase] complex were identical with these two tRNAs. Nitrocellulose binding studies suggested that the sulfur-deficient tRNA(Ile) bound more efficiently to its synthetase compared to normal tRNA(Ile). Modified nucleoside analysis showed that these tRNAs contained identical amounts of all modified bases except for dihydrouridine and 4-thiouridine. Normal tRNA(Ile) contains 1 mol 4-thiouridine and dihydrouridine per mol tRNA, while cysteine-starved tRNA(Ile) contains 2 mol dihydrouridine per mol tRNA and is devoid of 4-thiouridine. Several lines of evidence are presented which show that 4-thiouridine can be removed or lost from normal tRNA(Ile) without a change in aminoacylation properties. Further, tRNA isolated from E. coli C6 grown with glutathione instead of cysteine has a normal content of 4-thiouridine, but its tRNA(Ile) has an increased rate of aminoacylation. We conclude that the low content of dihydrouridine in tRNA(Ile) from E. coli cells grown in cysteine-containing medium is most likely responsible for the slow aminoacylation kinetics observed with this tRNA. The possibility that specific dihydrouridine residues in this tRNA might be necessary in establishing the correct conformation of tRNA(Ile) for aminoacylation is discussed.     

Exploring biological processes involved in embryonic stem cell differentiation by analyzing proteomic data

Since, proteins carry out many functional roles in a cell with different concentrations, proteomics is likely a more appropriate approach to explain biological processes and cellular events than mRNA studies. Although, gene ontology provides a systematic and organized vocabulary of biological terms for proteins, we need more details to decide about the correct duty and annotation of proteins in a specific condition. One can assume that a change of protein concentration is related to a biological process of that protein with negligible error. Therefore, we can obtain more information about the function of proteins by studying these profiles. In this study, we used time-course proteomic data of a twenty day differentiation study of embryonic stem cells (ESCs) differentiating to embryoid bodies (EBs). Hierarchical clustering was used to cluster time-series concentration profile of proteins. Our results demonstrate that there are eleven active processes with distinct concentration profiles in this initial differentiation. According to the concentration profiles of proteins, we suggest new change points (or equivalently, new stages) in the course of embryonic differentiation.     

Conformational study of human serum albumin in pre-denaturation temperatures by differential scanning calorimetry, circular dichroism and UV spectroscopy

Thermal conformational changes of human serum albumin (HSA) in phosphate buffer, 10 mM at pH = 7 are investigated using differential scanning calorimetric (DSC), circular dichroism (CD) and UV spectroscopic methods. The results indicate that temperature increment from 25 degrees C to 55 degrees C induces reversible conformational changes in the structure of HSA. Conformational change of HSA are shown to be a three-step process. Interestingly, melting temperature of the last domain is equal to the maximum value of fever in pathological conditions, i.e. 42 degrees C. These conformational alterations are accompanied by a mild alteration of secondary structures. Study of HSA-SDS (sodium dodecyl sulphate) interaction at 45 degrees C and 35 degrees C reveals that SDS affects the HSA structure at least in three steps: the first two steps result in more stabilization and compactness of HSA structure, while the last one induces the unfolding of HSA. Since HSA has a more affinity for SDS at 45 degrees C compared to 35 degrees C, It is suggested that the net negative charge of HSA is decreased in fever, which results in the decrease of HSA-associated cations and plasma osmolarity, and consequently, heat removal via the increase in urine volume.     

Impact of RNA structure on the prediction of donor and acceptor splice sites

Background  

gene identification in genomic DNA sequences by computational methods has become an important task in bioinformatics and computational gene prediction tools are now essential components of every genome sequencing project. Prediction of splice sites is a key step of all gene structural prediction algorithms.     

商州产大马士革玫瑰精油研究

采用ISO9842:2003玫瑰油标准,对陕西商州引种的保加利亚主栽玫瑰品种“Kazanluk”(RosadamascenaMiller)精油进行分析。结果表明,该玫瑰精油香气具有天然玫瑰花香,香气细腻、柔和、飘逸。油为液体,淡黄色,相对密度(20/20℃)0.8599,折光指数(20℃)1.4592,旋光度(20℃)-4.3°,冻点20.6℃,酯值11.9,这些物理指标达到了标准要求。大量主香成分相对含量:乙醇0.5%,香茅醇45.5%,橙花醇4.5%,香叶醇7.6%,苯乙醇2.9%,十七烷烃1.13%,十九烷烃15.5%,二十一烷烃5.0%。这些成分含量与原产地保加利亚玫瑰油成分范围有一定差异,但与摩洛哥同类玫瑰油标准相符,可以作为商品油在国际市场销售。     

Using microwave irradiation in Marchi's method for demonstrating degenerated myelin

Conventional methods for histological preparation of degenerated myelin are time-consuming and difficult. The purpose of our study was to shorten the time required for the procedure and to obtain better quality results for light microscopic demonstration of degenerated myelin in the central and peripheral nervous systems by using microwave irradiation. Rat brain and sciatic nerve were used for the study. The middle cerebral artery was occluded and the sciatic nerve was cut to produce myelin degeneration. Marchi's method was used for staining degenerated myelin. Fixation for light microscopy that would take two days using the conventional procedure was completed in 16.5-18.5 min using microwave irradiation. While staining of degenerated myelin requires 10 days for the conventional Marchi method, we decreased it to 7 h for brain tissue and 1 h for sciatic nerve by using the microwave oven. Moreover, a better quality preparation was achieved in the groups stained under microwave irradiation than those prepared by the conventional method.