Primary antibiotic resistance and associated mechanisms in Helicobacter pylori isolates from Senegalese patients

Background

Antibiotic combination therapy for Helicobacter pylori eradication must be adapted to local resistance patterns, but the epidemiology of H. pylori resistance to antibiotics is poorly documented in Africa. The aim was to determine the antibiotic resistance rates, as well as the associated molecular mechanisms, of strains isolated in Dakar, Senegal.

Methods

One hundred and eight H. pylori strains were isolated between 2007 and 2009 from 108 patients presenting with upper abdominal pain to the Gastroenterology Department of Le Dantec Hospital. Antimicrobial susceptibility testing was performed for amoxicillin, clarithromycin, metronidazole, levofloxacin and tetracyclin using the E-test method. Mutations in the 23S rRNA gene of clarithromycin-resistant strains and in gyrA and gyrB of levofloxacin-resistant strains were investigated.

Results

Isolates were characterized by no resistance to amoxicillin (0%), tetracycline (0%), and very low rate of resistance to clarithromycin (1%), but a high rate of resistance to metronidazole (85%). The clarithromycin-resistant strain displayed the A2143G mutation. A worrying rate of levofloxacin resistance was detected (15%). N87I and D91N were the most common mutations in the quinolone-resistance-determining region of gyrA.

Conclusions

The first-line empirical regimen for H. pylori eradication in Senegal should include clarithromycin. Increasing rates of fluoroquinolone resistance detected should discourage the use of levofloxacin-containing regimens without prior antimicrobial susceptibility testing.     

Brassinolide may control aquaporin activities in Arabidopsis thaliana

 It is usually assumed that aquaporins present in the cellular membranes could be an important route in the control of water flux in plants, but evidence for this hypothesis is scarce. In this paper, we report measurements of the osmotic permeability (P _os ) of protoplasts isolated from hypocotyls of wild-type and mutant Arabidopsis thaliana (L.) Heynh. Mutants were affected in their growth and exhibited different sensitivities to the phytohormone, brassinolide. For the two mutants studied (cpd: constitutive photomorphogenesis and dwarfism; bri1: brassinosteroid insensitive), hypocotyl length was correlated to P _os for the protoplasts. Under experimental conditions where hypocotyl growth had ceased, restoration of root, hypocotyl and petiole growth by brassinolide was correlated with an increase in P _os of the hypocotyl protoplasts. We consider that the increase in P _os of the hypocotyl cells was needed because these cells were part of the transcellular water pathway of the plant. This is the first time, to our knowledge, that brassinolide has been shown to be involved in the modification of the water-transport properties of cell membranes. Our results also emphasize the importance of aquaporins and the transcellular pathway in water transport under normal growth conditions. Received: 15 January 2000 / Accepted: 18 May 2000     

hoc: An Arabidopsis mutant overproducing cytokinins and expressing high in vitro organogenic capacity

A novel Arabidopsis thaliana mutant, named hoc, was found to have an high organogenic capacity for shoot regeneration. The HOC locus may be involved in cytokinin metabolism leading to cytokinin-overproduction. In vitro, hoc root explants develop many shoots in the absence of exogenous growth regulators. The mutant displays a bushy phenotype with supernumerary rosettes and with normal phyllotaxy, resulting from precocious axillary meristem development. Genetic and molecular analyses show that the high shoot regeneration and the bushy phenotype are controlled by a recessive single gene, located on chromosome I, next to the GAPB CAPS marker. The mapping data and allelism tests reveal that the hoc mutant is not allelic to other reported Arabidopsis growth-regulator mutants. In darkness the hoc mutant is de-etiolated, with a short hypocotyl, opened cotyledons and true leaves. Growth regulator assays reveal that the mutant accumulates cytokinins at about two- and sevenfold the cytokinin level of wild-type plants in its aerial parts and roots, respectively. Consequently, the elevated amounts of endogenous cytokinins in hoc plants are associated with high organogenic capacity and hence bushy phenotype. Thus hoc is the first cytokinin-overproducing Arabidopsis mutant capable of auto-regenerating shoots without exogenous growth regulators.     

Preparation and crystal structure of trans-dihydroxo-[tetrakis(2,6-dichlorophenyl)porphinato]ruthenium(IV)·2toluene

Trans-dihydroxo-[tetrakis(2,6-dichlorophenyl)porphinato]ruthenium(IV) ([Ru(OH)₂(TDCPP)]) was prepared by meta-chloroperbenzoic acid oxidation of [Ru(CO)(TDCPP)] in dichloromethane-toluene, and its crystal structure is reported. Crystal data for [Ru(OH)₂(TDCPP)]·2toluene:C₄₄H₂₂N₄O₂Cl₈Ru·2C₇H₈, orthorhombic, space group Pbca a = 13.149(1), B = 19.893(2), C = 21.093(2)Å, U = 55.17.3(2) ų, Z = 4. The short axial Ru---O bond distance, 1.790(7) Å, is in the range expected for a double Ru(IV)-oxygen bond. Both hydroxo ligands are approximately located in the mean plane of two opposite dichlorophenyl groups. Full-matrix least-squares refinement of positional and thermal parameters, using 2368 unique reflections with F > 2.5 σ (F) led to R(F) = 0.063; R_w = 0.066.     

Tiny steps towards greater knowledge: An osteological review with novel data on the Atlantic Forest toadlets of the Brachycephalus ephippium species group

Brachycephalus is a small, endemic genus of anurans that occur throughout the Brazilian Atlantic Forest. Recent analyses corroborated the monophyly of two species groups within this genus (B. ephippium and B. pernix), whereas the B. didactylus group appears to be polyphyletic. Herein, we compare and describe the skeletal system of all species from the Brachycephalus ephippium species group. We investigated diagnostic characters that are potentially useful to delimit similar species, confirmed the previously proposed genus definition and added six extra characters. We propose an osteological diagnosis for each species of the B. ephippium group, evaluating and describing intraspecific variations. Our results suggest that adults of B. ephippium group have ornamented parotic plates, ornamented post-orbital crests, absence of quadratojugal and neopalatines, distal end of the otic ramus of squamosal expanded towards the parotic plate, reduced zygomatic ramus of the squamosals, posterolateral projection of the crista parotica, presence of ornamented spinal plates (except B. alipioi) and ornamented paravertebral plates. We highlighted the importance of including more than one specimen per species when dealing with miniaturized taxa. A comparison with other Brachycephalus species groups and with Ischnocnema was also provided. Lastly, we suggest some characters to be included in future phylogenetic analysis.     

From the inside out: Discovery of a new genus of threadsnakes based on anatomical and molecular data,with discussion of the leptotyphlopid hemipenial morphology

The systematics of Leptotyphlopidae is historically controversial mostly due to their conserved external morphology in comparison with other snakes. However, recent studies have stressed that anatomical data might be informative for clarifying the leptotyphlopid taxonomy and evolution. We erect a new genus to accommodate Leptotyphlops collaris based on evidence from osteology, hemipenial morphology, and molecular data. We also provide expanded data regarding the intraspecific variation based on additional specimens collected in field trips and literature data, performing detailed comparisons among the new genus and all other New World leptotyphlopids. The new genus is distinguished from other leptotyphlopids by its unique hemipenial morphology and its exclusive combination of osteological and external morphology characters, with molecular data also supporting the new generic arrangement. We also provide a comprehensive discussion of the hemipenial morphology for the subfamily Epictinae based on literature and novel data gathered herein.     

Managing data locally to answer questions globally: The role of collaborative science in ecology

Ecologists are increasingly asking large‐scale and/or broad‐scope questions that require vast datasets. In response, various top‐down efforts and incentives have been implemented to encourage data sharing and integration. However, despite general consensus on the critical need for more open ecological data, several roadblocks still discourage compliance and participation in these projects; as a result, ecological data remain largely unavailable. Grassroots initiatives (i.e. efforts initiated and led by cohesive groups of scientists focused on specific goals) have thus far been overlooked as a powerful means to meet these challenges. These bottom‐up collaborative data integration projects can play a crucial role in making high quality datasets available because they tackle the heterogeneity of ecological data at a scale where it is still manageable, all the while offering the support and structure to do so. These initiatives foster best practices in data management and provide tangible rewards to researchers who choose to invest time in sound data stewardship. By maintaining proximity between data generators and data users, grassroots initiatives improve data interpretation and ensure high‐quality data integration while providing fair acknowledgement to data generators. We encourage researchers to formalize existing collaborations and to engage in local activities that improve the availability and distribution of ecological data. By fostering communication and interaction among scientists, we are convinced that grassroots initiatives can significantly support the development of global‐scale data repositories. In doing so, these projects help address important ecological questions and support policy decisions.     

Adenosine receptors and brain diseases: neuroprotection and neurodegeneration

Adenosine acts in parallel as a neuromodulator and as a homeostatic modulator in the central nervous system. Its neuromodulatory role relies on a balanced activation of inhibitory A(1) receptors (A1R) and facilitatory A(2A) receptors (A2AR), mostly controlling excitatory glutamatergic synapses: A1R impose a tonic brake on excitatory transmission, whereas A2AR are selectively engaged to promote synaptic plasticity phenomena. This neuromodulatory role of adenosine is strikingly similar to the role of adenosine in the control of brain disorders; thus, A1R mostly act as a hurdle that needs to be overcame to begin neurodegeneration and, accordingly, A1R only effectively control neurodegeneration if activated in the temporal vicinity of brain insults; in contrast, the blockade of A2AR alleviates the long-term burden of brain disorders in different neurodegenerative conditions such as ischemia, epilepsy, Parkinson's or Alzheimer's disease and also seem to afford benefits in some psychiatric conditions. In spite of this qualitative agreement between neuromodulation and neuroprotection by A1R and A2AR, it is still unclear if the role of A1R and A2AR in the control of neuroprotection is mostly due to the control of glutamatergic transmission, or if it is instead due to the different homeostatic roles of these receptors related with the control of metabolism, of neuron-glia communication, of neuroinflammation, of neurogenesis or of the control of action of growth factors. In spite of this current mechanistic uncertainty, it seems evident that targeting adenosine receptors might indeed constitute a novel strategy to control the demise of different neurological and psychiatric disorders.