Differences in pathogenicity among cloned sublines of a murine leukemia virus.

Five clones of the lymphatic leukemia virus 334C were isolated by a procedure designed to maintain homogeneity of the clones. Three of these induced leukemia in mice with the time course of the uncloned parental virus, one induced leukemia with a delayed time course, and one seemed to be biologically inactive. When the clone inducing leukemia most rapidly and the clone inducing leukemia least rapidly were subcloned, the subclones retained the leukemogenicity of the parental clones. The electrophoretic patterns of purified virion proteins and hybridization of viral RNAs with virus-specific DNA suggest that these clones are two closely related variants, not unrelated viruses. Furthermore, in mice infected with these two clones, viral RNA appears in thymuses and spleens at the same time after infection and at nearly the same concentrations. Thus, variations in leukemogenicity can be determined by a genetic property of an ecotropic leukemia virus, and this property is expressed in some manner more subtle than simple control of replication.     

The determination of key factors from life table data

Summary A new method is proposed for detecting key factors from life tables for animals whose life-cycle is divided into several stages. This method is based upon an equation that partitions the variance of the number alive at the end of the life-cycle into components associated with variation in the number entering the first stage of the cycle, variation in survival rates, and also density-dependent aspects of survival. It is illustrated by analysing Blank and Ash's (1962) census data for a population of partridges. The conclusions reached are somewhat different from those reached by Blank et al. (1967) when they applied Varley and Gradwell's (1960) type of key factor analysis to the same set of data.     

Chemical water quality studies in the Central Patagonian Region of Chile following the eruption of Volcan Hudson

In February/March, 1993, a range of water-quality variables were measured in nine freshwater lakes at different locations in Region XI, Chile. Seven of the lakes, situated between the Rio Ibanez (46 °08S) and Lago Lapparent (46 °14S), are characterised by low concentrations of minerals and nutrients, similar to the oligotrophic lakes of the Araucanian district of Chile (39 °S to 42 °S).Sulphate concentrations were disproportionately high at each of these sites and it is proposed that this results from the deposition of volcanic ash following the eruption of Volcan Hudson in August, 1991. The concentration of sulphate found in a ninth lake well to the north of the ash deposition zone was 35 fold lower than those typically measured within the main study area.Lago Lapparent is a large blue lake receiving glacial sediments, that forms the southern boundary of the area studied. Concentrations of minerals and nutrients found at this site were generally even lower than those found in the other seven lakes within the area. Organochlorine pesticides were not detected at any of the sites after solid phase extraction of 250 ml water samples.     

A Radiation Hybrid Map of Mouse Chromosome 13

A mouse radiation hybrid (RH) panel was used to make a framework map for the entire length of mouse chromosome (Chr) 13. Forty-one loci were typed, and while most used primers flanking simple sequence repeats, some genes were included. The most proximal and distal loci are D13Mit132 and D13Mit35. The estimate of map length for Chr 13 is 1328 cR. The map is compared with the same set of loci from the consensus map for Chr 13, which is 70 cM in length, and also with a recombinational map derived from an intraspecies cross typed for many of the same loci. The mouse RH panel gave good resolution for Chr 13 and at the distal end allowed separation of previously nonrecombinant markers that are present on a single 620-kb YAC clone. Data analysis was performed using the RH option for Map Manager QT. This framework RH map of Chr 13 is the second of a series of RH maps for mouse chromosomes.     

A simulation study of three methods for estimating selective values and survival rates from recapture data

The methods ofManly (1973),Manly (1975) andManly (1977) for estimating survival rates and relative survival rates from recapture data have been compared by computer simulation. In the simulations batches of two types of animal were “released” at one point in “time” and recapture samples were taken at “daily” intervals from then on. The various methods of estimation were then used to estimate, the daily survival rates of type 1 and type 2 animals, and also the survival rate of the type 2 animals relative to the type 1 animals. Simulation experiments were designed to examine (a) the bias in estimates, (b) the relative precision of different methods of estimation, (c) the validity of confidence intervals for true parameter values, and (d) the effect on estimates of the failure of certain assumptions.     

Analysis of polymorphic variation in different types of habitat

A correlation between the distribution of an organism and features of its environment can be taken as indirect evidence of natural selection. Biologists may therefore collect samples from polymorphic populations at a number of locations, classify the locations into habitat types, and consider whether the distribution of morphs varies with the habitat. Statistical aspects of this type of study are discussed in this paper. A randomization test for habitat effects is proposed and a negative binomial model is suggested for the distribution of morphs from random locations within one type of habitat. Data on the distribution of Cepaea hortensis and C. nemoralis snails in southern England provide an example. For both species there is clear evidence of differences between habitats, although the morph distributions are rather variable within habitats. The negative binomial model suggests that, for the snail data, variation in morph proportions is mainly due to location differences. The binomial sampling error is relatively unimportant unless the sample size at a location is very small. Therefore it is reasonable to analyse morph proportions by standard methods without giving different weights to data from different locations. The snail data are analysed in this way. Discriminant function analyses are used to test for habitat effects. The relationships between C. hortensis and C. nemoralis morph frequencies within one habitat are examined by a canonical correlation analysis.     

A comparison of three maximum likelihood models for stage-frequency data

A comparison has been made between the estimates obtained from maximum likelihood estimation of gamma, inverse normal, and normal distribution models for stage-frequency data. Results have been compared for six of sets of test data, and from many sets of simulated data. It is concluded that (1) some estimates may differ substantially between the models, (2) estimates from the correct model have little bias, and estimated standard errors are generally close to theoretical values, (3) there are problems in determining degrees of freedom for chi-squared goodness of fit tests, so that it is best to compare test statistics with simulated distributions, and (4) goodness of fit tests may not discriminate well between the three models.     

Enzymatic digestion of operator DNA in the presence of the lac repressor tryptic core

The trypsin-resistant core protein of the lac repressor was utilized in protecting operator DNA from two types of enzymatic digestion. Core repressor protects and enhances operator DNA digestion by DNase I in the same fashion as intact repressor, though to a lesser degree on the lower strand. DNase I patterns found for the ternary complexes (protein-sugar-operator) were consistent with the expected affinity alterations of the protein species in response to binding these ligands. The 3′ boundaries obtained by exonuclease III digestion for the intact repressor-operator complex varied slightly from those reported by Shalloway et al. (1980). Asymmetric binding to operator by the core repressor fragment was suggested by differences in the 3′ boundary for the core compared to intact repressor on the promoter-distal side of the complex. A composite picture of repressor structure and function emerges from the protection studies reported here and in the accompanying paper. In light of these and other results, models for repressor binding are examined.