Amino acid analysis at the picomole level. Application to the C-terminal sequence analysis of polypeptides.

Amino acids labelled with dimethylaminoazobenzenesulphonyl chloride can be separated by reversed-phase high-pressure liquid chromatography and detected in the visible region (436 nm). All 19 naturally occurring amino acids can be separated on a Zorbax ODS column by employing two different gradient systems consisting of an acetonitrile/aqueous buffer mixture. As little as 2--5 pmol of an individual dimethylaminoazobenzenesulphonyl-amino acid can be quantitatively analysed with reliability, and only 10--30 ng of the dimethylaminoazobenzenesulphonylated protein hydrolysate is needed for each complete amino acid analysis. This new technique is as sensitive as any of the current amino acid analysis methods involving ion-exchange separation plus fluorescence detection, and is technically much simpler. By the combination of this sensitive amino acid-analysing technique with carboxypeptidase, we have been able to determine the C-terminal sequence of polypeptides at the picomole level.     

Immunochemical analysis of the carbohydrate moiety of yeast killer toxin K28

Killer toxin K₂₈, a 16 kd protein secreted by the wine yeast Saccharomyces cerevisiae strain 28, was reversibly bound by a column of Concanavalin A-Sepharose, confirming its glycoprotein nature. HPLC analysis of acid hydrolyzates of K₂₈ toxin as well as Western-blots of -eliminated and/or endo H-treated killer toxin preparations probed with polyclonal -toxin antibodies revealed that the carbohydrate moiety of K₂₈ consists of D-mannose only, which is O-glycosidically linked via Ser/Thr residues to the protein part. The change in gel mobility of K₂₈ after -elimination was caused by a decrease in molecular mass of about 1,800, corresponding to a carbohydrate moiety of 10 mannose residues per killer toxin molecule.     

Assembly of light-harvesting bacteriochlorophyll in a model transmembrane helix in its natural environment

The transmembrane, bacteriochlorophyll-binding region of a bacterial light-harvesting complex, (LH2-alpha from the photosynthetic bacterium Rhodobacter sphaeroides) was redesigned and overexpressed in a mutant of Rb. sphaeroides lacking LH2. Bacteriochlorophyll served as internal probe for the fitness of this new region for the assembly and energy transfer function of the LH2 complex. The ability to absorb and transfer light energy is practically undisturbed by the exchange of the transmembrane segment, valine -7 to threonine +6, of LH2-alpha with a 14 residue Ala-Leu sequence. This stretch makes up the residues of the transmembrane helix that are in close contact (< or =4.5 A) with the bacteriochlorophyll molecules that are coordinated through His of both the alpha and beta-subunits. In this Ala-Leu stretch, neither alpha-His0, which binds the bacteriochlorophyll, nor the adjacent alpha-Ile-1, were replaced. Novel LH2 complexes composed of LH2-alpha with a model transmembrane sequence and a normal LH2-beta are assembled in vivo into a complex, the biochemical and spectroscopic properties of which closely resemble the native one. In contrast, the additional insertion of four residues just outside the C-terminal end of the model transmembrane helix leads to complete loss of functional antenna complex. The results suggest that light energy can be harvested and transferred efficiently by bacteriochlorophyll molecules attached to only few key residues distributed over the polypeptide, while residues at the bacteriochlorophyll-helix interface seem to be largely dispensable for the functional assembly of this membrane protein complex. This novel antenna with a simplified transmembrane domain and a built-in probe for assembly and function provides a powerful model system for investigation of the factors that contribute to the assembly of chromophores in membrane-embedded proteins.     

Global analysis of cellular protein translation by pulsed SILAC

Current methods for system‐wide gene expression analysis detect changes in mRNA abundance, but neglect regulation at the level of translation. Pulse labeling with stable isotopes has been used to measure protein turnover rates, but this does not directly provide information about translation rates. Here, we developed pulsed stable isotope labeling by amino acids in cell culture (pSILAC) with two heavy isotope labels to directly quantify protein translation on a proteome‐wide scale. We applied the method to cellular iron homeostasis as a model system and demonstrate that it can confidently identify proteins that are translationally regulated by iron availability.     

Elektronenmikroskopische Untersuchungen zur Dynamik neurosekretorischer Zellen von Enchytraeus (Oligochaeta)

Zusammenfassung Von lichtmikroskopischen Befunden der Neurosekretion bei dem Oligochaeten Enchytraeus ausgehend, haben wir an zwei elektronenmikroskopisch genau bezeichneten und festgelegten Zellen bzw. Zelltypen, die bereits lichtmikroskopisch charakterisiert worden waren, Untersuchungen über die submikroskopisch faßbare Zelldynamik durchgeführt. Die beiden Arten neurosekretorischer Zellen (Q-Zelle und P-Zellen) sind elektronen-mikroskopisch schon durch ihre Lage zu erfassen. Sie können nicht nur durch die Zellgröße, sondern auch durch ihre Elementargranula, den Aufbau des endoplasmatischen Retikulums und den Golgi-Apparat eindeutig unterschieden werden. Wie schon in den lichtmikroskopischen Untersuchungen wurde die Sekretionsaktivität mit der Amputation ausgelöst. Sowohl in der Q -als auch in der P-Zelle bewirkt die Amputation eine unmittelbare Sekretentleerung. Die darauf einsetzende Phase der Sekretproduktion ist submikroskopisch durch eine erhöhte Zahl von Golgistrukturen in diesen Zellen, durch das deutlich in Erscheinung tretende granuläre endoplasmatische Retikulum und durch eine fortschreitende Vergrößerung und Verdichtung von Lysosomen in beiden Zelltypen gekennzeichnet. Für die Q-Zelle sind weiterhin die Verstärkung des diesen Zelltyp besonders noch charakterisierenden Bereiches von Membranzisternen und die dortige Ribosomenbildung typisch. Auf Grund der Feststellungen wird die Frage der Beziehung einzelner Strukturen in diesen beiden Zelltypen zur Produktion des Neuro-sekrets diskutiert. Die elektronenmikroskopische Untersuchung führte zur Entdeckung eines weiteren Zelltyps, der im Lichtmikroskop bisher nicht erkannt worden war und der sich durch besonderen Reichtum an Mitochondrien und großen Lipoid (?)-Komplexen auszeichnet (M-Zelle). Über seine Bedeutung ist jedoch noch keine Aussage möglich.

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Summary The cytophysiology of two types of neurosecretory cells (Q and P cell) in the brain of the oligochete Enchytraeus was studied at the ultrastructural level. These cell types can be identified by their location, and particularly by the size difference of their elementary granules. Amputation of the last ten segments caused a release of secretory product followed by a phase of renewed production. This was characterized by changes in the endoplasmic reticulum, the Golgi apparatus, and the lysosomes. The role of these structures in the production of neurosecretory material was discussed. Furthermore, a cell type with extraordinarily numerous mitochondria, hitherto unknown in Enchytraeus, was described. Its function has not yet been determined.

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Mit Unterstützung durch die Sächsische Akademie der Wissenschaften zu Leipzig.

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Herrn Prof. Dr. F. Seidel, Marburg, zum 70. Geburtstag gewidmet.     

Homology modeling and characterization of IgE binding epitopes of mountain cedar allergen Jun a 3

The Jun a 3 protein from mountain cedar (Juniperus ashei) pollen, a member of group 5 of the family of plant pathogenesis-related proteins (PR-proteins), reacts with serum IgE from patients with cedar hypersensitivity. We used the crystal structures of two other proteins of this group, thaumatin and an antifungal protein from tobacco, both approximately 50% identical in sequence to Jun a 3, as templates to build homology models for the allergen. The in-house programs EXDIS and FANTOM were used to extract distance and dihedral angle constraints from the Protein Data Bank files and determine energy-minimized structures. The mean backbone deviations for the energy-refined model structures from either of the templates is <1 A, their conformational energies are low, and their stereochemical properties (determined with PROCHECK) are acceptable. The circular dichroism spectrum of Jun a 3 is consistent with the postulated beta-sheet core. Tryptic fragments of Jun a 3 that reacted with IgE from allergic patients all mapped to one helical/loop surface of the models. The Jun a 3 models have features common to aerosol allergens from completely different protein families, suggesting that tertiary structural elements may mediate the triggering of an allergic response.