Conceptual Error in Determination of NAD-Malic Enzyme in Extracts Containing NAD-Malic Dehydrogenase

The typical procedure for determining NAD⁺-malic enzyme (EC 1.1.1.39) is to calculate the enzyme rate to be ΔA₃₄₀/Δ time after the endogenous NAD⁺-malic dehydrogenase (EC 1.1.1.37) catalyzed reaction has reached equilibrium. This ignores the equilibrium shift of oxaloacetic acid and NADH during the course of the NAD⁺-malic enzyme reaction and causes an error that varies depending on the reagent [malate], [NAD⁺], pH and final [NADH]. For a ΔA₃₄₀ of 0.02, the error is about 80% and for a ΔA₃₄₀ of 0.30, 20%. We develop this argument, give supportive data and present a simple method to circumvent the error.     

Diversity of Metabolic Patterns in Human Brain Tumors: Enzymes of Energy Metabolism and Related Metabolites and Cofactors

Biopsies from 15 human gliomas, five meningiomas, four Schwannomas, one medulloblastoma, and four normal brain areas were analyzed for 12 enzymes of energy metabolism and 12 related metabolites and cofactors. Samples, 0.01-0.25 microgram dry weight, were dissected from freeze-dried microtome sections to permit all the assays on a given specimen to be made, as far as possible, on nonnecrotic pure tumor tissue from the same region. Great diversity was found with regard to both enzyme activities and metabolite levels among individual tumors, but the following generalities can be made. Activities of hexokinase, phosphorylase, phosphofructokinase, glycerophosphate dehydrogenase, citrate synthase, and malate dehydrogenase levels were usually lower than in brain; glycogen synthase and glucose-6-phosphate dehydrogenase were usually higher; and the averages for pyruvate kinase, lactate dehydrogenase, 6-phosphogluconate dehydrogenase, and beta-hydroxyacyl coenzyme A dehydrogenase were not greatly different from brain. Levels of eight of the 12 enzymes were distinctly lower among the Schwannomas than in the other two groups. Average levels of glucose-6-phosphate, lactate, pyruvate, and uridine diphosphoglucose were more than twice those of brain; 6-phosphogluconate and citrate were about 70% higher than in brain; glucose, glycogen, glycerol-1-phosphate, and malate averages ranged from 104% to 127% of brain; and fructose-1,6-bisphosphate and glucose-1,6-bisphosphate levels were on the average 50% and 70% those of brain, respectively.     

Measles virus infects and suppresses proliferation of T lymphocytes from transgenic mice bearing human signaling lymphocytic activation molecule

Humans are the only natural reservoir of measles virus (MV), one of the most contagious viruses known. MV infection and the profound immunosuppression it causes are currently responsible for nearly one million deaths annually. Human signaling lymphocytic activation molecule (hSLAM) was identified as a receptor for wild-type MV as well as for MV strains prepared as vaccines. To better evaluate the role of hSLAM in MV pathogenesis and MV-induced immunosuppression, we created transgenic (tg) mice that expressed the hSLAM molecule under the control of the lck proximal promoter. hSLAM was expressed on CD4(+) and CD8(+) T cells in the blood and spleen and also on CD4(+), CD8(+), CD4(+) CD8(+), and CD4(-) CD8(-) thymocytes. Wild-type MV, after limited passage on B95-8 marmoset B cells, and the Edmonston laboratory strain of MV infected hSLAM-expressing cells. There was a direct correlation between the amount of hSLAM expressed on the cells' surface and the degree of viral infection. Additionally, MV infection induced downregulation of receptor hSLAM and inhibited cell division and proliferation of hSLAM(+) but not hSLAM(-) T cells. Therefore, these tg mice provide the opportunity for analyzing and comparing MV-T cell interactions and MV pathogenesis in cells expressing only the hSLAM MV receptor with those of tg mice whose T cells selectively express another MV receptor, CD46.     

Re-evaluation of rate constants involved in the action of the initiation and elongation factors eIF-2B and EF-Ts.

Rate constants calculated previously by the author (Biochem. Int. 22, 523-533:1990) for the reactions catalysed by eIF-2B (GEF) in which free GDP exchanges with GDP bound to eIF-2 have been re-evaluated using the computational procedures developed by Chau et al. (J. Biol. Chem. 256, 5591-5596:1981) for the analogous reactions catalysed by EF-Ts. Modification of the equations used by Chau et al. emphasises the interrelationships of the rate constants for the binding of GDP and of EF-Ts (eIF-2B) to the ternary complex EF-Ts.EF-Tu.GDP (eIF-2B.eIF-2.GDP). The modification leads to some revision of the previously published values for the rate constants involved in the action of EF-Ts as put forward by Chau et al. as well as for those involved in the action of eIF-2B.     

Applicability of PM3 to transphosphorylation reaction path: Toward designing a minimal ribozyme

A growing body of evidence shows that RNA can catalyze many of the reactions necessary both for replication of genetic material and the possible transition into the modern protein-based world. However, contemporary ribozymes are too large to have self-assembled from a prebiotic oligonucleotide pool. Still, it is likely that the major features of the earliest ribozymes have been preserved as molecular fossils in the catalytic RNA of today. Therefore, the search for a minimal ribozyme has been aimed at finding the necessary structural features of a modern ribozyme (Beaudry and Joyce, 1990). Both a three-dimensional model and quantum chemical calculations are required to quantitatively determine the effects of structural features of the ribozyme on the reaction it catalyzes. Using this model, quantum chemical calculations must be performed to determine quantitatively the effects of structural features on catalysis. Previous studies of the reaction path have been conducted at theab initio level, but these methods are limited to small models due to enormous computational requirements. Semiempirical methods have been applied to large systems in the past; however, the accuracy of these methods depends largely on the system under investigation. In the preent study we assess the validity of the MNDO/PM3 method on a simple model of the ribozyme-catalyzed reaction, or hydrolysis of phosphoric acid. We find that the results are qualitatively similar toab initio results using large basis sets. Therefore, PM3 is suitable for studying the reaction path of the ribozyme-catalyzed reaction.     

Transfer-RNA, magnesium and the formation of ternary complexes by eukaryotic initiation factor eIF-2

The likely concentrations of free magnesium ions in assay systems measuring ternary complex formation with the eukaryotic initiation factor eIF-2 and the exchange of bound GDP have been calculated. Contrary to the suggestion of Roy et al. (Biochem. Biophys. Res. Commun. 146, 114-120) amounts of added tRNA are unlikely to sequester sufficient magnesium ions to affect significantly their role in the assays. There seems little correlation between methionyl-tRNA added and the extent of ternary complex formation in published data other than that expected from mass action. In vivo the concentration of methionyl-tRNA is probably greater than or equal to that of eIF-2 which is shown to be necessary for efficient functioning of the initiation factor.     

Influence of serum and insulin on the accumulation of aminoisobutyrate by rat hepatoma cells.

1. Cultured rat hepatoma cells accumulate 2-aminoisobutyrate to high concentrations by a transport mechanism probably of the A type mediation. 2. Transport is enhanced by the presence of serum. When cells are deprived of serum the rate of transport declines over a period of hours; conversely addition of serum leads over a period of hours to increase in transport activity. In the presence of serum the apparent Km for aminoisobutyrate uptake is about 8 mM. In cells deprived of serum the Km is much higher. 3. Addition of insulin produces both an immediate increase in the rate of aminoisobutyrate uptake and a time-dependent rise. 4. The presence of alanine diminished aminoisobutyrate uptake in a concentration-dependent fashion. Competition is seen both in the presence and absence of serum but not when cells are incubated at 4 degrees C. 5. Preincubation with alanine for 1 h also diminishes aminoisobutyrate uptake when the alanine is removed. Cells take a period of several hours to recover from the depression of transport induced by alanine. 6. Transport of aminoisobutyrate rapidly declines in the presence of cycloheximide. Actinomycin had no effect for at least 8 h.