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51.
Swiatek-Kozlowska J Brasuń J Łuczkowski M Makowski M 《Journal of inorganic biochemistry》2002,90(3-4):106-112
The study on the binding ability of dehydro-tri- and tetrapeptides has shown that the ,β-double bond has a critical effect on the peptide coordination to metal ions. It may affect the binding of the vicinal amide nitrogens by the electronic effect and stabilize the complex due to steric effects. The (Z) isomer is the most effective in stabilizing of the complexes formed. The presence of large side chain in the dehydroamino acid residue may also be critical for the coordination mode in the metallopeptide systems. 相似文献
52.
Amphotericin B (AmB) is a polyene antibiotic frequently applied in the treatment of fungal infections. According to the general understanding, the mode of action of AmB is directly related to the molecular organization of the drug in the lipid environment, in particular to the formation of pore-like molecular aggregates. Electronic absorption and fluorescence techniques were applied to investigate formation of molecular aggregates of AmB in the lipid environment of liposomes and monomolecular layers formed at the argon-water interface. It appears that AmB dimers, stabilized by van der Waals interactions, are present in the membrane environment along with the aggregates formed by a greater number of molecules. Linear dichroism measurements reveal that AmB is distributed between two fractions of molecules, differently oriented with respect to the bilayer. Molecules in one fraction remain parallel to the plane of the membrane and molecules in the other one are perpendicular. Scanning Force Microscopy imaging of the surface topography of the monolayers formed with AmB in the presence of lipids reveals formation of pore-like structures characterized by the external diameter close to 17 A and the internal diameter close to 6 A. All the findings are discussed in terms of importance of the molecular organization of AmB in the pharmacological action, as well as of the toxic side effects of the drug. 相似文献
53.
Makowski A Brzostek S Cohen RN Hollenberg AN 《Molecular endocrinology (Baltimore, Md.)》2003,17(2):273-286
The thyroid hormone receptor (TR) recruits the nuclear corepressors, nuclear receptor corepressor (NCoR) and silencing mediator of retinoid and thyroid hormone receptors (SMRT), to target DNA elements in the absence of ligand. While the TR preferentially recruits NCoR, the mechanism remains unclear. The corepressors interact with the TR via interacting domains (IDs) present in their C terminus which contain a conserved motif termed a CoRNR box. Despite their similarity, the corepressor IDs allow for nuclear receptor specificity. Here we demonstrate that NCoR stabilizes the TR homodimer when bound to DNA by preventing its dissociation from thyroid hormone response elements. This suggests that NCoR acts to hold the repression complex in place on target elements. The TR homodimer recruits NCoR through two of its three IDs, one of which is not present in SMRT. This unique ID, N3, contains a CoRNR box but lacks the extended helical motif present in each of the other IDs. Instead, N3 contains an isoleucine just proximal to this motif. This isoleucine is also conserved in N2 but not in the corresponding S2 domain in SMRT. On thyroid hormone response elements and in mammalian cells this residue is critical in both N3 and N2 for high-affinity TR binding. In addition, this residue also controls specificity for the interactions of TR with NCoR. Together these data suggest that the specific recruitment of NCoR by the TR through a unique motif allows for stabilization of the repression complex on target elements. 相似文献
54.
Edson L da Silva Mariusz K Piskula Norio Yamamoto Jae-Hak Moon Junji Terao 《FEBS letters》1998,430(3):903
The oxidative susceptibility of plasma obtained from rats after intragastric administration of quercetin was studied to know whether or not quercetin acts as an in vivo antioxidant after metabolic conversion. Quercetin was raised in the rat blood plasma essentially as glucuronide and/or sulfate conjugates. The plasma obtained from rats after quercetin administration was more resistant against copper sulfate-induced lipid peroxidation than the control plasma on the basis of the accumulation of cholesteryl ester hydroperoxides and the consumption of α-tocopherol. The results strongly suggest that some conjugated metabolites of quercetin act as effective antioxidants when plasma is subject to metal ion-induced lipid peroxidation. 相似文献
55.
Anders ?stin Mariusz Kowalyczk Rishikesh P. Bhalerao G?ran Sandberg 《Plant physiology》1998,118(1):285-296
The metabolism of indole-3-acetic
acid (IAA) was investigated in 14-d-old Arabidopsis plants grown in
liquid culture. After ruling out metabolites formed as an effect of
nonsterile conditions, high-level feeding, and spontaneous
interconversions, a simple metabolic pattern emerged. Oxindole-3-acetic
acid (OxIAA), OxIAA conjugated to a hexose moiety via the carboxyl
group, and the conjugates indole-3-acetyl aspartic acid (IAAsp) and
indole-3-acetyl glutamate (IAGlu) were identified by mass spectrometry
as primary products of IAA fed to the plants. Refeeding experiments
demonstrated that none of these conjugates could be hydrolyzed back to
IAA to any measurable extent at this developmental stage. IAAsp was
further oxidized, especially when high levels of IAA were fed into the
system, yielding OxIAAsp and OH-IAAsp. This contrasted with the
metabolic fate of IAGlu, since that conjugate was not further
metabolized. At IAA concentrations below 0.5 μm, most of
the supplied IAA was metabolized via the OxIAA pathway, whereas only a
minor portion was conjugated. However, increasing the IAA
concentrations to 5 μm drastically altered the metabolic
pattern, with marked induction of conjugation to IAAsp and IAGlu. This
investigation used concentrations for feeding experiments that were
near endogenous levels, showing that the metabolic pathways controlling
the IAA pool size in Arabidopsis are limited and, therefore, make good
targets for mutant screens provided that precautions are taken to avoid
inducing artificial metabolism.The plant hormone IAA is an important signal molecule in the
regulation of plant development. Its central role as a growth regulator
makes it necessary for the plant to have mechanisms that strictly
control its concentration. The hormone is believed to be active
primarily as the free acid, and endogenous levels are controlled in
vivo by processes such as synthesis, oxidation, and conjugation. IAA
has been shown to form conjugates with sugars, amino acids, and small
peptides. Conjugates are believed to be involved in IAA transport, in
the storage of IAA for subsequent use, in the homeostatic control of
the pool of the free hormone, and as a first step in the catabolic
pathways (Cohen and Bandurski, 1978; Nowacki and Bandurski, 1980;
Tuominen et al., 1994; Östin et al., 1995; Normanly, 1997). It is
generally accepted that in some species conjugated IAA is the major
source of free IAA during the initial stages of seed germination (Ueda
and Bandurski, 1969; Sandberg et al., 1987; Bialek and Cohen, 1989),
and there is also evidence that in some plants (but not all; see Bialek
et al., 1992), the young seedling is entirely dependent on the release
of free IAA from conjugated pools until the plant itself is capable of
de novo synthesis (Epstein et al., 1980; Sandberg et al., 1987).The function of conjugated IAA during vegetative growth is somewhat
less clear. It has been shown that conjugated IAA constitutes as much
as 90% of the total IAA in the plant during vegetative growth
(Normanly, 1997). However, the role of the IAA conjugates at this stage
of the plant''s life cycle remains unknown. Analysis of endogenous IAA
conjugates in vegetative tissues has revealed the presence of a variety
of different compounds, including indole-3-acetyl-inositol,
indole-3-acetyl-Ala, IAAsp, and IAGlu (Anderson and Sandberg, 1982;
Cohen and Baldi, 1983; Chisnell, 1984; Cohen and Ernstsen, 1991;
Östin et al., 1992). Studies of vegetative tissues have indicated
that IAAsp, one of the major conjugates in many plants, is the first
intermediate in an irreversible deactivation pathway (Tsurumi and Wada,
1986; Tuominen et al., 1994; Östin, 1995). Another mechanism that
is believed to be involved in the homeostatic control of the IAA pool
is catabolism by direct oxidation of IAA to OxIAA, which has been shown
to occur in several plant species (Reinecke and Bandurski, 1983;
Ernstsen et al., 1987).One area in the study of IAA metabolism in which our knowledge is
increasing is the analysis of the homeostatic controls of IAA levels in
plants. It has been possible, for instance, to increase the levels of
IAA in transgenic plants expressing iaaM and iaaH
genes from Agrobacterium tumefaciens. Analysis of these
transgenic plants has indicated that plants have several pathways that
can compensate for the increased production of IAA (Klee et al., 1987;
Sitbon, 1992). It is expected that future studies using now-available
genes will provide further insight into IAA metabolism. For example, a
gene in maize encoding IAA-Glc synthetase has been identified, and
several genes (including ILR1, which may be involved
in hydrolysis of the indole-3-acetyl-Leu conjugate) have been cloned
from Arabidopsis (Szerszen et al., 1994; Bartel and Fink,
1995). Furthermore, Chou et al. (1996) identified a gene that
hydrolyzes the conjugate IAAsp to free IAA in the bacterium
Enterobacter aggloremans.Because of its small genome size, rapid life cycle, and the ease of
obtaining mutants, Arabidopsis is increasingly used as a
genetic model system to investigate various aspects of plant growth and
development. IAA signal transduction is also being investigated
intensively in Arabidopsis in many laboratories (Leyser, 1997). Mutants
with altered responses to externally added auxins or IAA conjugates
have been identified in Arabidopsis. The identified mutants are either
signal transduction mutants such as axr1-4 (Lincoln et al.,
1990), or have mutations in genes involved in auxin uptake or
transport, such as aux1 and pin1 (Okada et al.,
1991; Bennett et al., 1996). A few mutants that are unable to regulate
IAA levels or are unable to hydrolyze IAA conjugates, sur1-2
and ilr1, respectively, have also been identified (Bartel
and Fink, 1995; Boerjan et al., 1995). To our knowledge, no mutant that
is auxotrophic for IAA has been identified to date, which may
reflect the redundancy in IAA biosynthetic pathways or the lethality of
such mutants.In spite of the work reported thus far, many aspects of the metabolism
of IAA in Arabidopsis require further investigation, because few
details of the processes involved in IAA regulation are known. This
lack of knowledge puts severe constraints on genetic analysis of IAA
metabolism in Arabidopsis. For example, it is essential to have prior
knowledge of IAA metabolism to devise novel and relevant screens with
which to identify mutants of IAA metabolism. We have sought to address
this issue by identifying the metabolic pathways involved in catabolism
and conjugation under conditions that minimally perturb physiological
processes. In this investigation we studied the conjugation and
catabolic pattern of IAA by supplying relatively low levels of labeled
IAA and identifying the catabolites and conjugates by MS. Different
feeding systems were tested to optimize the application of IAA and to
avoid irregularities in metabolism attributable to culturing, feeding
conditions, or microbial activity. It is well documented that IAA
metabolism is altered according to the amount of exogenous auxin
applied; therefore, we placed special emphasis on distinguishing
between catabolic routes that occur at near-physiological
concentrations and those that occur at the high auxin concentrations
commonly used in mutant screens. 相似文献
56.
57.
Zuzanna Setkowicz Agata Ga?dzińska Joanna J. Osoba Karolina Karwowska Piotr Majka Jaros?aw Orze? Bartosz Kossowski Piotr Bogorodzki Krzysztof Janeczko Mariusz Wyle?o? Stefan P. Gazdzinski 《PloS one》2015,10(10)
BackgroundObesity is a worldwide epidemic with more than 600 million affected individuals. Human studies have demonstrated some alterations in brains of otherwise healthy obese individuals and elevated risk of neurodegenerative disease of old age; these studies have also pointed to slightly diminished memory and executive functions among healthy obese individuals. Similar findings were obtained in animal models of obesity induced by high fat diet. On the other hand, low carbohydrate high fat diets are currently promoted for losing weight (e.g., Atkin’s style diets). However, the long-term effects of such diets are not known. Additionally, high fat diets leading to (mild) ketonemia were shown to improve brain function in elderly humans and in some animal models.AimTo evaluate the hypothesis that long-term use of a high fat diet was associated with decreases in spatial memory, smaller hippocampi and hippocampi metabolite concentrations in Wistar rats.MethodsTwenty five male Wistar rats were put on high fat diet (HFD; 60% calories from fat, 30% from carbohydrates) on their 55th day of life, while 25 control male rats (CONs) remained on chow. Adequate levels of essential nutrients were provided. Both groups underwent memory tests in 8-arm radial maze at 3rd, 6th, 9th, and 12th month. 1H magnetic resonance spectroscopy was employed to measure concentrations of tNAA (marker of neuronal integrity) at one month and one year, whereas MRI was used to evaluate hippocampal volumes.ResultsObese rats (OBRs) consumed similar amount of calories as CONs, but less proteins. However, their protein intake was within recommended amounts. Throughout the experiment OBRs had statistically higher concentrations of blood ketone bodies than CONs, but still within normal values. At post-mortem assessment, OBRs had 38% larger fat deposits than CONs (p<0.05), as evaluated by volume of epididymis fat, an acknowledged marker of fat deposits in rats. Contrary to our expectations, OBRs had better scores of memory behavioral tasks than CONs throughout the experiment. At one year, their hippocampi were by 2.6% larger than in CONs (p = 0.05), whereas concentration of tNAA was 9.8% higher (p = 0.014).ConclusionLong-term HFD in our study resulted in better memory, larger hippocampal volumes, as well as higher hippocampal metabolite concentrations, possibly due to increased levels of blood ketone bodies. The results should be interpreted with caution, as results from animal models do not necessarily directly translate in human condition. 相似文献
58.
It has been interesting that nearly all of the ion activities that have been analysed thus far have exhibited oscillations that are tightly coupled to growth. Here, we present discrete Fourier transform (DFT) spectra with a finite sampling of tip-growing cells and organs that were obtained from voltage measurements of the elongating coleoptiles of maize in situ. The electromotive force (EMF) oscillations (~ 0.1 μV) were measured in a simple but highly sensitive resistor–inductor circuit (RL circuit), in which the solenoid was initially placed at the tip of the specimen and then was moved thus changing its position in relation to growth (EMF can be measured first at the tip, then at the sub-apical part and finally at the shank). The influx- and efflux-induced oscillations of Ca2+, along with H+, K+ and Cl- were densely sampled (preserving the Nyquist theorem in order to ‘grasp the structure’ of the pulse), the logarithmic amplitude of pulse spectrum was calculated, and the detected frequencies, which displayed a periodic sequence of pulses, were compared with the literature data. A band of life vital individual pulses was obtained in a single run of the experiment, which not only allowed the fundamental frequencies (and intensities of the processes) to be determined but also permitted the phase relations of the various transport processes in the plasma membrane and tonoplast to be established. A discrete (quantised) frequency spectrum was achieved for a growing plant for the first time, while all of the metabolic and enzymatic functions of the life cell cycle were preserved using this totally non-invasive treatment. 相似文献
59.
Given the emerging evidence of an association between periodontal infections and systemic conditions, the search for specific methods to detect the presence of P. gingivalis, a principal etiologic agent in chronic periodontitis, is of high importance. The aim of this study was to characterize antibodies raised against purified P. gingivalis HmuY protein and selected epitopes of the HmuY molecule. Since other periodontopathogens produce homologs of HmuY, we also aimed to characterize responses of antibodies raised against the HmuY protein or its epitopes to the closest homologous proteins from Prevotella intermedia and Tannerella forsythia. Rabbits were immunized with purified HmuY protein or three synthetic, KLH-conjugated peptides, derived from the P. gingivalis HmuY protein. The reactivity of anti-HmuY antibodies with purified proteins or bacteria was determined using Western blotting and ELISA assay. First, we found homologs of P. gingivalis HmuY in P. intermedia (PinO and PinA proteins) and T. forsythia (Tfo protein) and identified corrected nucleotide and amino acid sequences of Tfo. All proteins were overexpressed in E. coli and purified using ion-exchange chromatography, hydrophobic chromatography and gel filtration. We demonstrated that antibodies raised against P. gingivalis HmuY are highly specific to purified HmuY protein and HmuY attached to P. gingivalis cells. No reactivity between P. intermedia and T. forsythia or between purified HmuY homologs from these bacteria and anti-HmuY antibodies was detected. The results obtained in this study demonstrate that P. gingivalis HmuY protein may serve as an antigen for specific determination of serum antibodies raised against this bacterium. 相似文献
60.
Mariusz K. Jaglarz Janusz Kubrakiewicz Szczepan M. Bilinski 《Zoology (Jena, Germany)》2010,113(2):91-99
In fly ovaries, the follicular epithelium surrounding germline cells diversifies into several morphologically distinct cell subpopulations. This complex process is crucial for the formation of a regionally complex eggshell and establishment of polarity of the future embryo. Morphogenetic changes accompanying patterning of the follicular epithelium have been best characterized in the model fly, Drosophila melanogaster. Here, we analyze follicular epithelium diversification in the ovaries of Tachypeza nubila, a brachyceran fly closely related to the group Cyclorrhapha, which also includes Drosophila. We provide morphological evidence that in Tachypeza, the diversification process differs from that described in the Drosophila model system in several important respects: (i) follicle cells differentiate into five subpopulations (versus eight in Drosophila); (ii) only one of these subpopulations (i.e. border cells) is migratory (versus four in Drosophila); (iii) the main body follicle cells form a uniform epithelium with no distinct border between follicle cells covering the nurse cell compartment and the oocyte; (iv) chorionic material is deposited not only on the surface of the oocyte but also on the nurse cells; (v) there is no centripetal migration of the follicle cells; (vi) the resulting eggshell is morphologically simple with no regional specializations except for the micropylar apparatus at the anterior pole of the oocyte. Our findings provide novel insights into the evolution of the follicle cell patterning and functioning in dipterans. A critical analysis of these processes in different dipteran groups strongly indicates that in Tachypeza, follicular epithelium diversification follows a distinct pattern, novel for higher dipterans. 相似文献