Glucose metabolism at high density growth of E. coli B and E. coli K: Differences in metabolic pathways are responsible for efficient glucose utilization in E. coli B as determined by microarrays and northern blot analyses

The original article to which this Erratum refers was published in Biotechnol Bioeng 2005;90:805–820     

Ribonucleic acid from coffee beans

A method of extraction of RNA from coffee based on phenol treatment is described. Effectsf of various agents and pH of the extracting buffer on the efficiency of extraction were studied. The best extracting solution is 0·2 M Tris-HCl buffer at pH 7·4 with 1% sodium dodecyl sulphate and 0·05% EDTA. RNA (5–6%) is lost in the tissue residue and 4·6% in the interphase layer. No significant deviation of the spectral characteristics of the RNA solutions obtained from three samples of coffee from that for purified yeast RNA is observed. The purine-pyrimidine ratio for the RNA has been found to be in the range of 1·25–1·38.     

Active Transport of Manganese in Isolated Membranes of Escherichia coli

Accumulation of manganese was measured in subcellular membrane vesicles isolated from Escherichia coli. Accumulation of (54)Mn by vesicles in 0.5 m sucrose is stimulated by glucose and d-lactate and is inhibited by metabolic poisons such as dinitrophenol, m-chlorophenyl carbonylcyanide hydrazone, valinomycin, and nigericin. Manganese uptake by vesicles requires 10 mm calcium, which is not required for uptake of manganese by intact cells. The calcium requirement is specific and cannot be replaced by magnesium, sodium, or potassium. Strontium can replace calcium but is somewhat less effective than calcium. The uptake of manganese is via a manganese-specific system which shows saturation kinetics with manganese with a K(m) of 8 x 10(-6)m and a V(max) of 4 nmoles per min per g (wet weight) at 25 C. Magnesium and calcium do not compete for uptake. The accumulated manganese can be released from the vesicles by lipid active agents such as toluene, and can be exchanged for external manganese.     

Zinc oxide nanoparticle inhibits the biofilm formation of <Emphasis Type="Italic">Streptococcus pneumoniae</Emphasis>

Biofilms are structured consortia of microbial cells that grow on living and non living surfaces and surround themselves with secreted polymers. Infections with bacterial biofilms have emerged as a foremost public health concern because biofilm growing cells can be highly resistant to both antibiotics and host immune defenses. Zinc oxide nanoparticles have been reported as a potential antimicrobial agent, thus, in the current study, we have evaluated the antimicrobial as well as antibiofilm activity of zinc oxide nanoparticles against the bacterium Streptococcus pneumoniae which is a significant cause of disease. Zinc oxide nanoparticles showed strong antimicrobial activity against S. pneumoniae, with an MIC value of 40 μg/ml. Biofilm inhibition of S. pneumoniae was also evaluated by performing a series of experiments such as crystal violet assay, microscopic observation, protein count, EPS secretion etc. using sub-MIC concentrations (3, 6 and 12 µg/ml) of zinc oxide nanoparticles. The results showed that the sub-MIC doses of zinc oxide nanoparticles exhibited significant anti-biofilm activity against S. pneumoniae, with maximum biofilm attenuation found at 12 μg/ml. Taken together, the results indicate that zinc oxide nanoparticles can be considered as a potential agent for the inhibition of microbial biofilms.     

Molecular chaperone-like properties of an unfolded protein, alpha(s)-casein.

All molecular chaperones known to date are well organized, folded protein molecules whose three-dimensional structure are believed to play a key role in the mechanism of substrate recognition and subsequent assistance to folding. A common feature of all protein and nonprotein molecular chaperones is the propensity to form aggregates very similar to the micellar aggregates. In this paper we show that alpha(s)-casein, abundant in mammalian milk, which has no well defined secondary and tertiary structure but exits in nature as a micellar aggregate, can prevent a variety of unrelated proteins/enzymes against thermal-, chemical-, or light-induced aggregation. It also prevents aggregation of its natural substrates, the whey proteins. alpha(s)-Casein interacts with partially unfolded proteins through its solvent-exposed hydrophobic surfaces. The absence of disulfide bridge or free thiol groups in its sequence plays important role in preventing thermal aggregation of whey proteins caused by thiol-disulfide interchange reactions. Our results indicate that alpha(s)-casein not only prevents the formation of huge insoluble aggregates but it can also inhibit accumulation of soluble aggregates of appreciable size. Unlike other molecular chaperones, this protein can solubilize hydrophobically aggregated proteins. This protein seems to have some characteristics of cold shock protein, and its chaperone-like activity increases with decrease of temperature.