A new species of <Emphasis Type="Italic">Hamaticolax</Emphasis> Ho &amp; Lin, 2006 (Copepoda: Bomolochidae) from deep water macrourids in the Mediterranean

Hamaticolax resupinus n. sp. is described from specimens collected from the gill cavities of Coelorinchus mediterraneus Iwamoto & Ungaro and Coryphaenoides mediterraneus (Giglioli) (Gadiformes: Macrouridae) caught in the Western Mediterranean Sea at depths between 1,236 and 1,626 m. Hamaticolax resupinus n. sp. closely resembles H. maleus Oldewage, 1994, but differs from the latter by its smaller body size and in having a genital double-somite in the female that is markedly wider than the free abdominal somites and has strongly convex lateral margins. The new species is only the second bomolochid found on a macrourid host and is the first from depths in excess of 1,200 m. Hamaticolax resupinus n. sp. also represents the first parasitic copepod recorded from Coe. mediterraneus and only the third one from Cor. mediterraneus worldwide.     

Non fitting based FRET–FLIM analysis approaches applied to quantify protein–protein interactions in live cells

New imaging methodologies in quantitative fluorescence microscopy and nanoscopy have been developed in the last few years and are beginning to be extensively applied to biological problems, such as the localization and quantification of protein interactions. Fluorescence resonance energy transfer (FRET) detected by fluorescence lifetime imaging microscopy (FLIM) is currently employed not only in biophysics or chemistry but also in bio-medicine, thanks to new advancements in technology and also new developments in data treatment. FRET–FLIM can be a very useful tool to ascertain protein interactions occurring in single living cells. In this review, we stress the importance of increasing the acquisition speed when working in vivo employing Time-Domain FLIM. The development of the new mathematical-based non-fitting methods allows the determining of the fraction of interacting donor without the requirement of high count statistics, and thus allows the performing of high speed acquisitions in FRET–FLIM to still be quantitative.     

Can the world afford to ignore biotechnology solutions that address food insecurity?

Genetically engineered (GE) crops can be used as part of a combined strategy to address food insecurity, which is defined as a lack of sustainable access to safe and nutritious food. In this article, we discuss the causes and consequences of food insecurity in the developing world, and the indirect economic impact on industrialized countries. We dissect the healthcare costs and lost productivity caused by food insecurity, and evaluate the relative merits of different intervention programs including supplementation, fortification and the deployment of GE crops with higher yields and enhanced nutritional properties. We provide clear evidence for the numerous potential benefits of GE crops, particularly for small-scale and subsistence farmers. GE crops with enhanced yields and nutritional properties constitute a vital component of any comprehensive strategy to tackle poverty, hunger and malnutrition in developing countries and thus reduce the global negative economic effects of food insecurity.     

Use of the lambda Red recombinase system to produce recombinant prophages carrying antibiotic resistance genes

Background  

The Red recombinase system of bacteriophage lambda has been used to inactivate chromosomal genes in E. coli K-12 through homologous recombination using linear PCR products. The aim of this study was to induce mutations in the genome of some temperate Shiga toxin encoding bacteriophages. When phage genes are in the prophage state, they behave like chromosomal genes. This enables marker genes, such as antibiotic resistance genes, to be incorporated into the stx gene. Once the phages' lytic cycle is activated, recombinant Shiga toxin converting phages are produced. These phages can transfer the marker genes to the bacteria that they infect and convert. As the Red system's effectiveness decreased when used for our purposes, we had to introduce significant variations to the original method. These modifications included: confirming the stability of the target stx gene increasing the number of cells to be transformed and using a three-step PCR method to produce the amplimer containing the antibiotic resistance gene.     

Foraging in a changing environment: habitat shifts of an oceanic predator over the last half century

Spatial modelling studies stress the importance of predicting future species distribution in changing environments, but it is also important to establish historical distribution ranges of species to provide baseline conditions for understanding distribution shifts. We focused on pelagic ecosystems, the largest ecosystem on Earth. Based on boosting algorithms, we reconstructed the foraging patterns of an oceanic predator, wandering albatross Diomedea exulans, in the highly dynamic Southern Ocean over the last half century. To access the unobserved past oceanographic conditions, we used simulations of the OPA‐PISCES oceanic model for the 1958–2001 period. Firstly, we validated the simulated oceanographic variables (sea surface temperature and height, wind speed and chlorophyll a) for the 1998–2001 period with remotely sensed oceanographic data, which were highly correlated, except chlorophyll a. Secondly, we developed two habitat models (based on simulated and observed oceanographic variables) describing the foraging probability of albatrosses. We detected no statistically significant differences between the two models and predictions of both models matched the observed distribution patterns reasonably. Finally, we projected the most likely historical key pelagic habitats of albatross for the 1958 to 2001 period and characterised recurrent, occasional and unfavourable foraging areas in a decadal basis based on average predictions and their standard deviations. Our findings 1) provided a historical baseline (1958–1968) of recurrent, occasional and unfavourable foraging habitats, 2) evidenced a progressive habitat shift the following decades driven by a propagation of sea surface height from SE South Africa towards Antarctica from 1958 to 2001 and 3) measured habitat change rates of wandering albatross over the last half century. To our knowledge, our study provides the first quantitative long‐term assessment of the spatial response of a marine top predator to changing pelagic habitats of the Southern Ocean and highlighted the oceanographic mechanisms involved, offering new insights on future effects of climate change on the pelagic realm.     

Nuclear-localized Calcineurin Homologous Protein CHP1 Interacts with Upstream Binding Factor and Inhibits Ribosomal RNA Synthesis

Calcineurin homologous protein 1 (CHP1) is a widely expressed, 22-kDa myristoylated EF-hand Ca²⁺-binding protein that shares a high degree of similarity with the regulatory B subunit of calcineurin (65%) and with calmodulin (59%). CHP1 localizes to the plasma membrane, the Golgi apparatus, and the nucleus and functions to regulate trafficking of early secretory vesicles, activation of T cells, and expression and transport of the Na-H exchanger NHE1. Although CHP1 contains nuclear export signals, whether its nuclear and cytoplasmic localization is regulated and has distinct functions remain unknown. We show that CHP1 is predominantly in the nucleus in quiescent fibrobasts, is translocated to cytoplasmic compartments with growth medium, and that translocation is inhibited by mutations in the nuclear export motifs. In a screen for proteins co-precipitating with CHP1 in quiescent cells we identified the upstream binding factor UBF, a DNA-binding protein and component of the RNA polymerase I complex regulating RNA synthesis. The CHP1-UBF interaction is restricted to the nucleus and inhibited by Ca²⁺. Nuclear retention of CHP1 attenuates the abundance of UBF in the nucleolus and inhibits RNA synthesis when quiescent cells are transferred to growth medium. These data show UBF as a newly identified CHP1-binding protein and regulation of RNA synthesis as a newly identified function for nuclear-localized CHP1, which is distinct from CHP1 functions in the cytosol.     

Beyond imposex: other sexual alterations in a nassariid snail from Patagonia

The occurrence of a penis in female gastropods has commonly been accepted as an indicator of tributyltin (TBT) pollution. During the surveys performed in Patagonian waters between 2002 and 2010, individuals of Buccinanops deformis with a short penis and an external vas deferens were initially considered as showing imposex. Doubt arose when different manifestations of the phenomenon were identified at the two sites with the densest populations of the species (San Antonio Bay, SAB, and Villarino). This led us to search at both locations for: (a) histological confirmation of sex, (b) butyltin measurements in sediments and snail tissues, and (c) incidence of trematode infestation. We found that both populations have individuals with a short penis. While all the inspected individuals from SAB were histologically identified as females (imposex), those from Villarino were identified as males. Trematodes were absent in individuals from SAB and showed very low prevalence in those from Villarino, with metacercariae found in the digestive gland. In snail tissues, butyltins were found mainly in the form of dibutyltin (DBT) in SAB and at negligible levels in Villarino. In sediments, butyltins were found only in the form of TBT, at higher levels in SAB than in Villarino. Thus, it became clear that our finding of a short penis is a manifestation of imposex on females from SAB related to the high TBT levels, whereas in Villarino it is a male trait, which is not related to TBT or a trematode infestation but may be a Dumpton syndrome-like abnormality.