Deep phylogeographic structuring of populations of the trapdoor spider Moggridgea tingle (Migidae) from southwestern Australia: evidence for long-term refugia within refugia

Southwestern Australia has been recognized as a biodiversity hot spot of global significance, and it is particularly well known for its considerable diversity of flowering plant species. Questions of interest are how this region became so diverse and whether its fauna show similar diverse patterns of speciation. Here, we carried out a phylogeographic study of trapdoor spiders (Migidae: Moggridgea), a presumed Gondwanan lineage found in wet forest localities across southwestern Australia. Phylogenetic, molecular clock and population genetic analyses of mitochondrial (mtDNA) COI gene and ITS rRNA (internal transcribed spacer) data revealed considerable phylogeographic structuring of Moggridgea populations, with evidence for long-term (>3 million years) isolation of at least nine populations in different geographic locations, including upland regions of the Stirling and Porongurup Ranges. High levels of mtDNA divergence and no evidence of recent mitochondrial gene flow among valley populations of the Stirling Range suggest that individual valleys have acted as refugia for the spiders throughout the Pleistocene. Our findings support the hypothesis that climate change, particularly the aridification of Australia after the late Miocene, and the topography of the landscape, which allowed persistence of moist habitats, have been major drivers of speciation in southwestern Australia.     

Cotton genome mapping with new microsatellites from Acala ‘Maxxa’ BAC-ends

Fine mapping and positional cloning will eventually improve with the anchoring of additional markers derived from genomic clones such as BACs. From 2,603 new BAC-end genomic sequences from Gossypium hirsutum Acala ‘Maxxa’, 1,316 PCR primer pairs (designated as MUSB) were designed to flank microsatellite or simple sequence repeat motif sequences. Most (1164 or 88%) MUSB primer pairs successfully amplified DNA from three species of cotton with an average of three amplicons per marker and 365 markers (21%) were polymorphic between G. hirsutum and G. barbadense. An interspecific RIL population developed from the above two entries was used to map 433 marker loci and 46 linkage groups with a genetic distance of 2,126.3 cM covering approximately 45% of the cotton genome and an average distance between two loci of 4.9 cM. Based on genome-specific chromosomes identified in G. hirsutum tetraploid (A and D), 56.9% of the coverage was located on the A subgenome while 39.7% was assigned to the D subgenome in the genetic map, suggesting that the A subgenome may be more polymorphic and recombinationally active than originally thought. The linkage groups were assigned to 23 of the 26 chromosomes. This is the first genetic map in which the linkage groups A01 and A02/D03 have been assigned to specific chromosomes. In addition the MUSB-derived markers from BAC-end sequences markers allows fine genetic and QTL mapping of important traits and for the first time provides reconciliation of the genetic and physical maps. Limited QTL analyses suggested that loci on chromosomes 2, 3, 12, 15 and 18 may affect variation in fiber quality traits. The original BAC clones containing the newly mapped MUSB that tag the QTLs provide critical DNA regions for the discovery of gene sequences involved in biological processes such as fiber development and pest resistance in cotton. Electronic Supplementary Material Supplementary material is available for this article at and is accessible for authorized users.     

Pathological and incidental findings on brain MRI in a single-center study of 229 consecutive girls with early or precocious puberty

Central precocious puberty may result from organic brain lesions, but is most frequently of idiopathic origin. Clinical or biochemical factors which could predict a pathological brain MRI in girls with CPP have been searched for. With the recent decline in age at pubertal onset among US and European girls, it has been suggested that only girls with CPP below 6 years of age should have brain MRI performed.

Objective

To evaluate the outcome of brain MRI in girls referred with early signs of puberty in relation to age at presentation as well as clinical and biochemical parameters.

Method

A single-center study of 229 consecutive girls with early or precocious puberty who had brain imaging performed. We evaluated medical history, clinical and biochemical factors, and four groups were defined based on the outcome of their MRI.

Results

Thirteen out of 208 (6.3%) girls with precocious puberty, but no other sign of CNS symptoms, had a pathological brain MRI. Importantly, all 13 girls were above 6 years of age, and 6 girls were even 8–9 years old. Twenty girls (9.6%) had incidental findings on brain MRI. Furthermore, 21 girls had known CNS pathology at time of evaluation. Basal LH was significantly higher in girls with newly diagnosed CNS pathology compared to girls with a non-pathological MRI (p = 0.025); no cut of value was found as values overlapped.

Conclusion

A high frequency of 6–8 year old girls with precocious puberty in our study had a pathological brain MRI, which could not be predicted from any clinical nor biochemical parameters. Thus, we believe that girls with precocious pubertal development of central origin before 8 years of age should continue to be examined by a brain MRI.     

“Berry Patch” As a Kind of Place—the Ethnoecology of Black Huckleberry in Northwestern Canada

The Gitksan and Wet’suwet’en of Northwestern British Columbia formerly used landscape burning to manage patches of black huckleberry (Vaccinium membranaceum), the most important plant resource of their seasonal round. In view of its significance one might postulate that managed sites would conform to a biophysical or ecological type to maximize return for effort. However, a survey of a number of traditionally managed sites indicated that managed sites are characterized by wide variation in biophysical attributes including elevation, aspect and moisture regime, while proximity to fishing sites, village sites, or sites for harvest of alpine resources proved to be a common factor in known historic berry patch sites. We conclude that characterization of the ideal site type for aboriginal V. membranaceum management must include the economy and social institutions of the local First Nations and requires an enhanced appreciation for the sophistication of the strategies and techniques employed in their management and utilization of the species.

Historical Ecology, Responses to Current Ecological Changes and Conservation of Australian Spiders

In response to geohistorical events from the Mesozoic through the Tertiary with contraction of mesic forest to southwestern and eastern montane and coastal regions, and expansion of woodlands and xeric shrublands, nobreak Australian spiders today comprise relict families and genera (confined to Gondwanan habitats and refuges) along with later evolved representatives which have adapted to changing environments. Tropical relicts also persist in refugia in the arid interior while some spiders (both mygalomorphs and araneomorphs) have adapted to arid conditions, mainly through specialized behaviours. Although fire has become increasingly a phenomenon of the Australian environment it is doubtful whether any spiders are adapted to fire per se. European settlement has impacted differentially on relictual and later evolved representatives; a few species, including the funnelweb (Atrax robustus) and redback spider (Latrodectus hasselti) have benefited through enhanced habitat opportunities and some species of Badumna and other genera have become synanthropic. It is suggested that conservation strategies need to consider the ecoevolutionary history of particular spiders and their natural vulnerability or resilience to environmental factors.     

Phototropism in fishes,and its relation to the results obtained by eye-dislocation

Summary In the case of viviparous perch and goldfish, unilateral blinding causes a tilting on the anterior-posterior axis towards the normal eye, the amount of tilting being dependent upon the intensity of light. With a sudden change to a greater intensity of light, the fish circle toward the blind eye, and upon sudden reduction of the intensity they often circle toward the normal eye. The similarity of this reaction to the effect of unilateral blinding of insects is offered as an explanation.It is suggested that these results explain the experiments of Pearcy and Koppanyi. These workers dislocated one eye of a goldfish and removed the other one, explaining the consequent tilting of the fish as due to an attempt of the animal to regain its normal visual field. Since the fish was now totally blind, due to the effect of the operation, no tilting was present. As the dislocated eye. gradually recovered its vision, the fish began to tilt, reaching maximal tilting several weeks afterwards. However, since I have produced tilting by unilateral blinding alone, it seems evident that the results obtained by those two experimenters were also due to unilateral blinding, and not to dislocation of the eye.I am indebted to Dr. A. R. Moore both for the suggestion of the problem and for advice during the experiments.     

Aphid colonization of spring cereals

In 1970-1, Metopolophium dirhodum, Rhopalosiphum padi and Sitobion avenae were the commonest alatae trapped from April/May to August, with most in July and early August. The first alatae appeared in the Rothamsted survey suction trap 0–34 days before aphids were found on the cereals, but during May and June no relationship was found between the numbers trapped and the number on the crop. Most species occurred first near the sheltered edge of the crop, but M. dirhodum was widespread over the field. Most infestations were quickly dispersed by the movements of older morphs; adults only stayed in one place for about 2 days. Alate M. dirhodum moved more often than apterae, but both morphs of S. avenae moved equally often and more frequently between larvipositions than did those of M. dirhodum. Apterae deposited more nymphs in a ‘group’ than alatae, and M. dirhodum deposited more than S. avenae. Few ‘groups’ persisted for more than a week. Although M. dirhodum occupied the crop area faster than S. avenae, all 0–3 m lengths of row sampled being infested within 2–5 wk of their first appearance, most or all of the tillers were colonized only in late July 1970.