Systemic Induction of Photosynthesis via Illumination of the Shoot Apex Is Mediated Sequentially by Phytochrome B,Auxin and Hydrogen Peroxide in Tomato

Systemic signaling of upper leaves promotes the induction of photosynthesis in lower leaves, allowing more efficient use of light flecks. However, the nature of the systemic signals has remained elusive. Here, we show that preillumination of the tomato (Solanum lycopersicum) shoot apex alone can accelerate photosynthetic induction in distal leaves and that this process is light quality dependent, where red light promotes and far-red light delays photosynthetic induction. Grafting the wild-type rootstock with a phytochome B (phyB) mutant scion compromised light-induced photosynthetic induction as well as auxin biosynthesis in the shoot apex, auxin signaling, and RESPIRATORY BURST OXIDASE HOMOLOG1 (RBOH1)-dependent hydrogen peroxide (H₂O₂) production in the systemic leaves. Light-induced systemic H₂O₂ production in the leaves of the rootstock also was absent in plants grafted with an auxin-resistant diageotropica (dgt) mutant scion. Cyclic electron flow around photosystem I and associated ATP production were increased in the systemic leaves by exposure of the apex to red light. This enhancement was compromised in the systemic leaves of the wild-type rootstock with phyB and dgt mutant scions and also in RBOH1-RNA interference leaves with the wild type as scion. Silencing of ORANGE RIPENING, which encodes NAD(P)H dehydrogenase, compromised the systemic induction of photosynthesis. Taken together, these results demonstrate that exposure to red light triggers phyB-mediated auxin synthesis in the apex, leading to H₂O₂ generation in systemic leaves. Enhanced H₂O₂ levels in turn activate cyclic electron flow and ATP production, leading to a faster induction of photosynthetic CO₂ assimilation in the systemic leaves, allowing plants better adaptation to the changing light environment.As a consequence of their sessile lifestyle, plants have evolved a high capacity for the regulation of physiology, growth, and development that facilitates survival in a constantly changing environment. Environmental stimuli perceived within an organ not only influence morphogenetic and physiological changes within that organ but also generate systemic effects in other organs that are remote from the site of signal perception. This crucial phenomenon is called systemic signaling or systemic regulation. Systemic signaling prepares other tissues of a plant for future challenges that may initially only be sensed by a few local tissues or cells. Several types of systemic responses are known. These include systemic acquired resistance, which is typically activated by pathogens such as viruses, bacteria, and fungi (Fu and Dong, 2013), induced systemic resistance, which is triggered by beneficial soil microorganisms or others (Pieterse and Dicke, 2007), and systemic acquired acclimation, which is initiated by abiotic stresses such as high light, UV radiation, heat, cold, and salinity (Mittler and Blumwald, 2015).The light utilization efficiency of photosynthesis is important for the survival of understory plants and plants growing in canopies. In particular, the efficient use of the energy contained in light (sun) flecks is important because light flecks contribute up to 60% to 80% of photosynthetically active radiation received by understory plants (Pearcy and Seemann, 1990; Leakey et al., 2003, 2005). Earlier studies have shown the existence of systemic regulation of stomatal development and of photosynthesis in developing leaves in response to environmental signals perceived by mature leaves, such as changing irradiance and atmospheric CO₂ conditions (Lake et al., 2002; Coupe et al., 2006; Araya et al., 2008). Phytochome B (phyB) is important in the transmission of the systemic signals that modulate stomatal development in young leaves of Arabidopsis (Arabidopsis thaliana; Casson and Hetherington, 2014). In tomato (Solanum lycopersicum), there are two forms of phyB, phyB1 and phyB2, that work together to mediate red (R) light-induced responses, such as hypocotyl elongation and greening in seedlings (Hauser et al., 1995; Weller et al., 2000).Photosynthesis is completely switched off in the dark, specifically to prevent futile cycling of metabolites through the reductive and oxidative pentose phosphate pathways. Hence, leaves need time to reactivate the enzymes of carbon assimilation after a period of darkness. The time taken to reach maximum net rates of photosynthesis upon illumination is called photosynthetic induction (Walker, 1973). Systemic signaling also has been observed for the regulation of photosynthesis in relation to leaf ontology in understory plants (Montgomery and Givnish, 2008). The uppermost leaves, which are generally the first to receive sunlight, display faster photosynthetic induction times than understory leaves (Bai et al., 2008). Photosynthetic induction in understory leaves is enhanced by the preillumination of upper leaves but not lower leaves, suggesting a directional signal transfer (Hou et al., 2015). While this process allows plants to use the light energy in sun flecks more efficiently, the nature of the systemic signals and their transmission pathways remain largely unresolved. Although systemic signaling between different leaf ranks has been suggested to occur through the xylem (Thorpe et al., 2007) and also via electrical signals (Zimmermann et al., 2009), it is likely that systemic signals also pass through the phloem (Turgeon and Wolf, 2009; Hou et al., 2015). In addition, the phytohormone auxin is produced in the shoot apex and redistributed throughout the shoot by rapid nonpolar phloem transport (Ljung et al., 2001). Changes in the light environment can dramatically alter auxin homeostasis, which is regulated in a light quality- and photoreceptor-dependent manner (Halliday et al., 2009).The photosynthetic electron transport chain exhibits enormous flexibility in the relative rates of NADPH and ATP production in order to accommodate the varying requirements of metabolism (Foyer et al., 2012). Noncyclic, pseudocyclic, and cyclic electron flow (CEF) pathways operate in the photosynthetic electron transport chain to drive the proton gradient across the thylakoid membrane (Allen, 2003). Photosynthetic induction is not only associated with the activation of the light- and thiol-dependent activation of carbon assimilation enzymes but also dependent on a high rate of CEF to drive ATP synthesis (Foyer et al., 1992). Considerable overreduction of the electron transport acceptors occurs during the photosynthetic induction period, and this continues until carbon assimilation can be activated. CEF around PSI, an essential component of photosynthesis, drives the proton gradient in a situation when NADP reduction has reached its highest capacity and this essential electron acceptor is no longer available (Yamori et al., 2015; Yamori and Shikanai, 2016). CEF is particularly sensitive to the reduction-oxidation (redox) status of the chloroplast, which in turn is responsive to cellular redox homeostasis. Oxidants such as hydrogen peroxide (H₂O₂), which are produced by pseudocyclic electron flow in the chloroplasts, play a crucial role in the activation of CEF through modulation of the activity of the NADPH-plastoquinone reductase complex (Strand et al., 2015). Hormone-mediated generation of H₂O₂ also can stimulate CO₂ assimilation (Jiang et al., 2012).Auxins such as indole-3-acetic acid (IAA) generate H₂O₂ (Ivanchenko et al., 2013; Peer et al., 2013) and can regulate CO₂ assimilation (Bidwell and Turner, 1966; Hayat et al., 2009; Peng et al., 2013). Therefore, we used tomato plants to test the hypothesis that the systemic signaling that regulates photosynthetic induction in understory leaves arises from light-induced changes in auxin and H₂O₂ homeostasis involving the modulation of CEF in systemic leaves. We present evidence showing that R light perceived in the shoot apex by a phyB-dependent pathway alters IAA signaling in a systemic manner. IAA signals from the apex, perceived in distal leaves, trigger systemic H₂O₂ production that accelerates photosynthetic induction by increasing CEF-dependent ATP production in the systemic leaves. These findings provide new insights into the elaborate plant regulatory network that allows light adaptation in different organs.     

Inter‐ and intraspecific variation in body‐ and genome size in calanoid copepods from temperate and arctic waters

The tendency of ectotherms to get larger in the cold (Bergmann clines) has potentially great implications for individual performance and food web dynamics. The mechanistic drivers of this trend are not well understood, however. One fundamental question is to which extent variation in body size is attributed to variation in cell size, which again is related to genome size. In this study, we analyzed body and genome size in four species of marine calanoid copepods, Calanus finmarchicus, C. glacialis, C. hyperboreus and Paraeuchaeta norvegica, with populations from both south Norwegian fjords and the High Arctic. The Calanus species showed typical interspecific Bergmann clines, and we assessed whether they also displayed similar intraspecific variations—and if correlation between genome size and body size differed between species. There were considerable inter‐ as well as intraspecific variations in body size and genome size, with the northernmost populations having the largest values of both variables within each species. Positive intraspecific relationships suggest a functional link between body and genome size, although its adaptiveness has not been settled. Impact of additional drivers like phylogeny or specific adaptations, however, was suggested by striking divergences in body size – genome size ratios among species. Thus, C. glacialis and C. hyperboreus, had fairly similar genome size despite very different body size, while P. norvegica, of similar body size as C. hyperboreus, had the largest genome sizes ever recorded from copepods. The inter‐ and intraspecific latitudinal body size clines suggest that climate change may have major impact on body size composition of keystone species in marine planktonic food webs.     

Extracellular siderophores from Aspergillus ochraceous.

A large number of iron-chelating compounds (siderophores) were isolated from supernatants of iron-deficient cultures of a mold isolate, subsequently identified as Aspergillus ochraceous . Siderophores in their iron chelate form were purified to homogeneity by using Bio-Gel P2, silica gel, and C-18 bonded silica gel (reverse-phase) columns. Most of these compounds, as identified by 1H and 13C nuclear magnetic resonance spectroscopy and X-ray crystallography, belong to the ferrichrome family. The organism produces ferrirubin and ferrichrysin as the predominant and the second major compound (62 and 15% of the total siderophores), respectively. Ferrichrysin appears as the first siderophore in the medium on day 2 of growth. Several of the other siderophores are novel and ranged in quantities from 0.2 to 5% of the total. The trivial names asperchrome A, B1, B2, C, D1, D2, and D3 are proposed for these novel compounds, which are all members of the ferrichrome family, and all but the first one contain a common Orn1 - Orn2 - Orn3 - Ser1 -Ser2-Gly cyclic hexapeptide ring with three dissimilar ornithyl delta-N-acyl groups. Another compound which appeared late in the growth period was similar to fusarinine C ( fusigen ). All of these compounds showed growth factor activity to various extents in bioassays with Arthrobacter flavescens Jg-9. None of these compounds showed antibacterial activity against Escherichia coli or Bacillus megaterium.     

A report on three live births in women with poor ovarian response following intra-ovarian injection of platelet-rich plasma (PRP)

Molecular Biology Reports - The prevalence of poor response to gonadotropin stimulation is approximately 9–24% in women undergoing in vitro fertilization. Interestingly, due to containing a...     

Tight Coupling between Glucose and Mitochondrial Metabolism in Clonal ��-Cells Is Required for Robust Insulin Secretion

The biochemical mechanisms underlying glucose-stimulated insulin secretion from pancreatic β-cells are not completely understood. To identify metabolic disturbances in β-cells that impair glucose-stimulated insulin secretion, we compared two INS-1-derived clonal β-cell lines, which are glucose-responsive (832/13 cells) or glucose-unresponsive (832/2 cells). To this end, we analyzed a number of parameters in glycolytic and mitochondrial metabolism, including mRNA expression of genes involved in cellular energy metabolism. We found that despite a marked impairment of glucose-stimulated insulin secretion, 832/2 cells exhibited a higher rate of glycolysis. Still, no glucose-induced increases in respiratory rate, ATP production, or respiratory chain complex I, III, and IV activities were seen in the 832/2 cells. Instead, 832/2 cells, which expressed lactate dehydrogenase A, released lactate regardless of ambient glucose concentrations. In contrast, the glucose-responsive 832/13 line lacked lactate dehydrogenase and did not produce lactate. Accordingly, in 832/2 cells mRNA expression of genes for glycolytic enzymes were up-regulated, whereas mitochondria-related genes were down-regulated. This could account for a Warburg-like effect in the 832/2 cell clone, lacking in 832/13 cells as well as primary β-cells. In human islets, mRNA expression of genes such as lactate dehydrogenase A and hexokinase I correlated positively with HbA_1c levels, reflecting perturbed long term glucose homeostasis, whereas that of Slc2a2 (glucose transporter 2) correlated negatively with HbA_1c and thus better metabolic control. We conclude that tight metabolic regulation enhancing mitochondrial metabolism and restricting glycolysis in 832/13 cells is required for clonal β-cells to secrete insulin robustly in response to glucose. Moreover, a similar expression pattern of genes controlling glycolytic and mitochondrial metabolism in clonal β-cells and human islets was observed, suggesting that a similar prioritization of mitochondrial metabolism is required in healthy human β-cells. The 832 β-cell lines may be helpful tools to resolve metabolic perturbations occurring in Type 2 diabetes.     

Illuminating and mitigating the evolving impacts of COVID-19 on ethnocultural communities: a participatory action mixed-methods study

BACKGROUND:The COVID-19 pandemic has exacerbated disparities in poverty and illness for people in vulnerable circumstances in ethnocultural communities. We sought to understand the evolving impacts of COVID-19 on ethnocultural communities to inform intersectoral advocacy and community action.METHODS:The Illuminate Project used participatory action research, with cultural health brokers as peer researchers, from Sept. 21 to Dec. 31, 2020, in Edmonton, Alberta. Twenty-one peer researchers collected narratives from members of ethnocultural communities and self-interpreted them as they entered the narratives into the SenseMaker platform, a mixed-method data collection tool. The entire research team analyzed real-time, aggregate, quantitative and qualitative data to identify emerging thematic domains, then visualized these domains with social network analysis.RESULTS:Brokers serving diverse communities collected 773 narratives. Identified domains illuminate the evolving and entangled impacts of COVID-19 including the following: COVID-19 prevention and management; care of acute, chronic and serious illnesses other than COVID-19; maternal care; mental health and triggers of past trauma; financial insecurity; impact on children and youth and seniors; and legal concerns. We identified that community social capital and cultural brokering are key assets that facilitate access to formal health and social system supports.INTERPRETATION:The Illuminate Project has illustrated the entangled, systemic issues that result in poor health among vulnerable members of ethnocultural communities, and the exacerbating effects of COVID-19, which also increased barriers to mitigation. Cultural brokering and community social capital are key supports for people during the COVID-19 pandemic. These findings can inform policy to reduce harm and support community resiliency.

Mahatma Gandhi observed that “the true measure of any society can be found in how it treats its most vulnerable members.” Ethnocultural communities, defined by their unique shared characteristics (e.g., cultural traditions, language, country of origin),¹ face greater challenges and have higher rates of poverty and illness than the general Canadian population. Migration results in conditions that affect all social determinants of health and disproportionally affect health outcomes, herein referred to as vulnerable circumstances.^2,3 The emergence of major outbreaks of SARS-CoV-2 infections in ethnocultural communities highlights both the vulnerable circumstances of these communities and the disparities they face in accessing high-quality, culturally appropriate information and support.^4–7 Studies have shown substantial variation in deaths attributed to COVID-19 based on factors such as age, sex, ethnicity, length of time in Canada, income and education.^8–11 However, given the well-known gap in reporting comprehensive COVID-19 data in relation to race and ethnicity, efforts to measure its impact are hampered.^8–12 There is an urgent need to understand the evolving challenges of COVID-19 to inform action and public policy that can mitigate these challenges.To understand evolving situations of complexity and crisis, sensemaking, defined as “a continuous process to establish situational awareness,”¹³ is a crucial undertaking.¹⁴ Using participatory action research,^15–18 we sought to understand the evolving impacts of COVID-19 on ethnocultural communities to inform broader national efforts to migitate the impacts of COVID-19. Particularly, we sought to understand how the challenges of COVID-19 are entangled with contextual factors at multiple levels, how families and communities are leveraging strengths and social capital to adapt, and the role of cultural brokers in managing the crisis.     

Chemotaxis-mediated biodegradation of cyclic nitramine explosives RDX, HMX, and CL-20 by Clostridium sp. EDB2

Cyclic nitramine explosives, RDX, HMX, and CL-20 are hydrophobic pollutants with very little aqueous solubility. In sediment and soil environments, they are often attached to solid surfaces and/or trapped in pores and distribute heterogeneously in aqueous environments. For efficient bioremediation of these explosives, the microorganism(s) must access them by chemotaxis ability. In the present study, we isolated an obligate anaerobic bacterium Clostridium sp. strain EDB2 from a marine sediment. Strain EDB2, motile with numerous peritrichous flagella, demonstrated chemotactic response towards RDX, HMX, CL-20, and NO(2)(-). The three explosives were biotransformed by strain EDB2 via N-denitration with concomitant release of NO(2)(-). Biotransformation rates of RDX, HMX, and CL-20 by the resting cells of strain EDB2 were 1.8+/-0.2, 1.1+/-0.1, and 2.6+/-0.2nmol h(-1)mgwet biomass(-1) (mean+/-SD; n=3), respectively. We found that commonly seen RDX metabolites such as TNX, methylenedinitramine, and 4-nitro-2,4-diazabutanal neither produced NO(2)(-) during reaction with strain EDB2 nor they elicited chemotaxis response in strain EDB2. The above data suggested that NO(2)(-) released from explosives during their biotransformation might have elicited chemotaxis response in the bacterium. Biodegradation and chemotactic ability of strain EDB2 renders it useful in accelerating the bioremediation of explosives under in situ conditions.     

Fluorinated aminoglycosides and their mechanistic implication for aminoglycoside 3'-phosphotransferases from Gram-negative bacteria

Aminoglycoside 3'-phosphotransferases [APH(3')s] are important bacterial resistance enzymes for aminoglycoside antibiotics. These enzymes phosphorylate the 3'-hydroxyl of these antibiotics, a reaction that inactivates the drug. A series of experiments were carried out to shed light on the details of the turnover chemistry by these enzymes. Quench-flow pre-steady-state kinetic analyses of the reactions of Gram-negative APH(3') types Ia and IIa with kanamycin A, neamine, and their respective difluorinated analogues 4'-deoxy-4',4'-difluorokanamycin A and 4'-deoxy-4',4'-difluoroneamine were carried out, in conjunction with measurements of thio effect and viscosity studies. The fluorinated analogues were shown to be severely impaired as substrates for these enzymes. The magnitude of the effect of the impairment of the fluorinated substrates was in the same range as when the D198A mutant APH(3')-Ia was studied with nonfluorinated substrates. Residue 198 is the proposed active site base that promotes the aminoglycoside hydroxyl for phosphorylation. These findings collectively argue that the Gram-negative APH(3')s show significant nucleophilic participation in the transition state for the phosphate transfer reaction.