Detection of a Usp-like gene in Calotropis procera plant from the de novo assembled genome contigs of the high-throughput sequencing dataset

The wild plant species Calotropis procera (C. procera) has many potential applications and beneficial uses in medicine, industry and ornamental field. It also represents an excellent source of genes for drought and salt tolerance. Genes encoding proteins that contain the conserved universal stress protein (USP) domain are known to provide organisms like bacteria, archaea, fungi, protozoa and plants with the ability to respond to a plethora of environmental stresses. However, information on the possible occurrence of Usp in C. procera is not available. In this study, we uncovered and characterized a one-class A Usp-like (UspA-like, NCBI accession No. KC954274) gene in this medicinal plant from the de novo assembled genome contigs of the high-throughput sequencing dataset. A number of GenBank accessions for Usp sequences were blasted with the recovered de novo assembled contigs. Homology modelling of the deduced amino acids (NCBI accession No. AGT02387) was further carried out using Swiss-Model, accessible via the EXPASY. Superimposition of C. procera USPA-like full sequence model on Thermus thermophilus USP UniProt protein (PDB accession No. Q5SJV7) was constructed using RasMol and Deep-View programs. The functional domains of the novel USPA-like amino acids sequence were identified from the NCBI conserved domain database (CDD) that provide insights into sequence structure/function relationships, as well as domain models imported from a number of external source databases (Pfam, SMART, COG, PRK, TIGRFAM).     

Competition and facilitation structure plant communities under nurse tree canopies in extremely stressful environments

Nurse plant facilitation in stressful environments can produce an environment with relatively low stress under its canopy. These nurse plants may produce the conditions promoting intense competition between coexisting species under the canopy, and canopies may establish stress gradients, where stress increases toward the edge of the canopy. Competition and facilitation on these stress gradients may control species distributions in the communities under canopies. We tested the following predictions: (1) interactions between understory species shift from competition to facilitation in habitats experiencing increasing stress from the center to the edge of canopy of a nurse plant, and (2) species distributions in understory communities are controlled by competitive interactions at the center of canopy, and facilitation at the edge of the canopy. We tested these predictions using a neighbor removal experiment under nurse trees growing in arid environments. Established individuals of each of four of the most common herbaceous species in the understory were used in the experiment. Two species were more frequent in the center of the canopy, and two species were more frequent at the edge of the canopy. Established individuals of each species were subjected to neighbor removal or control treatments in both canopy center and edge habitats. We found a shift from competitive to facilitative interactions from the center to the edge of the canopy. The shift in the effect of neighbors on the target species can help to explain species distributions in these canopies. Canopy‐dominant species only perform well in the presence of neighbors in the edge microhabitat. Competition from canopy‐dominant species can also limit the performance of edge‐dominant species in the canopy microhabitat. The shift from competition to facilitation under nurse plant canopies can structure the understory communities in extremely stressful environments.     

Role of Vacuolar Membrane Transport Systems in Plant Salinity Tolerance

About 20% of all irrigated land is adversely affected by salinity hazards and therefore understanding plant defense mechanisms against salinity will have great impact on plant productivity. In the last decades, comprehension of salinity resistance at molecular level has been achieved through the identification of key genes encoding biomarker proteins underpinning salinity tolerance. Implication of the vacuolar transport systems in plant salinity tolerance is one example of these central mechanisms rendering tolerance to saline stress. One important organelle in plant cells is the central vacuole that plays pivotal multiple roles in cell functioning under normal and stress conditions. This review thus attempts to address different lines of evidence supporting the role of the vacuolar membrane transport systems in plant salinity tolerance. Vacuolar transport systems include Na⁺(K⁺)/H⁺ antiporters, V-ATPase, V-PPase, Ca²⁺/H⁺ exchangers, Ca²⁺-ATPase, ion channels, aquaporins, and ABC transporters. They contribute essentially in retaining a high cytosolic K⁺/Na⁺ ratio, K⁺ level, sequestrating Na⁺ and Cl^? into vacuoles, as well as regulation of other salinity responsive pathways. However, little is known about the regulation and functions of some of the vacuolar transporters under salinity stress and therefore need more exploration and focus. Numerous studies demonstrated that the activities of the vacuolar transporters are upregulated in response to salinity stress, confirming their central roles in salinity tolerance mechanism. The second line of evidence is that manipulation of one of the genes encoding the vacuolar transport proteins results in some successful improvement of plant salinity tolerance. Therefore, transgene pyramiding of more than one gene for developing genotypes with better and strong salinity tolerance and productivity should gain more attention in future research. In addition, we should move step further and verify the experimental data obtained from either a greenhouse or controlled environment into field trials in order to support our claims.

     

Onset of feeding in juvenile sea urchins and its relation to nutrient signalling

The purple sea urchin, Strongylocentrotus purpuratus, has been the focus of extensive ecological and developmental research over the years. Strongylocentrotus purpuratus larvae transition into the juvenile stage after an extensive planktonic period. The metamorphic transition is characterized by dramatic changes in morphology and physiology of the juvenile compared to the larval form and mechanisms underlying this process, especially the early days post-settlement, remain poorly understood. We used SEM and phalloidin stain analysis as well as whole mount in situ hybridization to gain a detailed understanding of juvenile development in relation to nutrient signalling [insulin-like growth factor (IIS), FoxO (forkhead box, sub-group ‘O’) and TOR (target of rampamycin), also known as IIS/TOR/FoxO signalling]. Our results show that the majority of juvenile feeding features are fully developed only after 8-days of juvenile development, leaving an extensive period of nutritional stress. We found that FoxO gene expression increases during that time period and is localized in juvenile tube feet, potentially associated with sensory structures involved in nutrient signalling. Our data complement existing work on sea urchin juvenile development and shed new light on the perimetamorphic period of Strongylocentrotus purpuratus, with respect to nutrient signalling and the potential stressful pre-feeding period of juvenile sea urchins.     

Comparative removal of solvent and detergent viral inactivating agents from human intravenous immunoglobulin G preparations using SDR HyperD and C18 sorbents

The capacity of hydrophobic octadecyl (C18) and SDR HyperD materials to remove the combination of 1% (v/v) solvent (tri-n-butyl phosphate, TnBP) with 1% (v/v) nonionic detergents (Triton X-100 and Triton X-45) used for viral inactivation of plasma-derived polyvalent intravenous immunoglobulin G (IVIG) preparation has been evaluated. Efficient removal of TnBP (<10 ppm in IVIG preparation) was found at ratios of 0.5 g of C18/7 ml of IVIG and 0.22 g of dry SDR HyperD/7 ml of IVIG. Binding capacities of TnBP were greater than 140 mg/g of C18 and greater than 318 mg/g of dry SDR HyperD. Complete removal of Triton X-45 (<2 ppm) was obtained at ratios of 1 g of C18/7 ml of IVIG and 0.44 g of dry SDR HyperD/7 ml of IVIG or above, corresponding to binding capacities in excess of 70 mg/g of C18 and in excess of 159 mg/g of dry SDR HyperD. Residual Triton X-100 was less than 30 ppm at a ratio of 4 g/14 ml of immunoglobulin G (IgG) for the C18 sorbent. Triton X-100 was less than 10 ppm when using SDR HyperD at a ratio of 0.66 g/7 ml of IgG, corresponding to a binding capacity of approximately 106 mg of Triton X-100/g of dry SDR HyperD. Good recoveries of IVIG were achieved in the effluent from both sorbents.     

Macrocyclic diarylheptanoids from Garuga pinnata

Three macrocyclic diarylheptanoids, 6'-hydroxygaruganin V (1), 9'-desmethylgarugamblin I (2) and 1,9'-didesmethylgaruganin III (3) were isolated from the petroleum ether and dichloromethane extracts of the stem bark of Garuga pinnata. The structures of these compounds were established by extensive spectroscopic studies, including high field NMR and MS measurements.     

Factors affecting the performance of horizontal flow constructed treatment wetland vegetated with Cyperus papyrus for municipal wastewater treatment

The effect of hydraulic loading rate (HLR) and hydraulic retention time (HRT) on the bioremediation of municipal wastewater using a pilot scale subsurface horizontal flow constructed treatment wetland (HFCTW) vegetated with Cyprus papyrus was investigated. Different HLRs were applied to the treatment system namely 0.18, 0.10, and 0.07 m³/m². d with corresponding HRTs of 1.8, 3.2, and 4.7 days, respectively. The flow rate was 8 m³/d, and the average organic loading rate (OLR) was 0.037 kg BOD/m³/d. Results showed that the performance of the HFCTW was linearly affected by decreasing the HLR and increasing the HRT. The highest treatment efficiency was achieved at HRT (4.7 days) and HLR (0.07 m³/m². d). The percentage reductions of chemical oxygen demand (COD), biochemical oxygen demand (BOD), and total suspended solids (TSS) were 86%, 87%, and 80%, respectively. Satisfactory nutrient removal was obtained. Also, removal of 2–3 logs of bacterial indicators of pollution was achieved. The dry biomass of Cyperus was 7.7 kg/m² and proved to be very efficient in nitrification processes due to high diversity of the roots that increase the treatment surface area.