A recommended workflow for DNase I footprinting using a capillary electrophoresis genetic analyzer

Fragment analysis was developed to determine the sizes of DNA fragments relative to size standards of known lengths using a capillary electrophoresis genetic analyzer. This approach has since been adapted for use in DNA footprinting. However, DNA footprinting requires accurate determination of both fragment length and intensity, imposing specific demands on the experimental design. Here we delineate essential considerations involved in optimizing the fragment analysis workflow for use in DNase I footprinting to ensure that changes in DNase I cleavage patterns may be reliably identified.     

Natural enemies for the cabbage webworm,Hellula undalis (Fabr.) (Lepidoptera: Pyralidae) in Malaysia

Four species of larval parasitoids were reared from larvae of the cabbage webworm (CWW),Hellula undalis (Fabr.) (Pyralidae: Glaphyriinae) collected from various cruciferous plants and a capparidaceous weed,Cleome rutidosperma (DC). On cabbage, only two species were recorded,viz, Bassus sp. (Braconidae) andTrathala flavoorbitalis (Cam.) (Ichneumonidae). The other parasitoids were braconids,Chelonus sp. andPhanerotoma sp. Egg or pupal parasitoids were not recorded. The parasitoids were not an important mortality factor of CWW on cabbage because they were usually present at the end of the crop season and their numbers were generally low. On the other hand, predator-exclusion experiments indicated that predators were important in determining the density of CWW on cabbage and the within-generation survival in the field. The major predator was the fire-ant,Solenopsis geminata (F.), which foraged on the prepupae and pupae.     

Recent advances in exploiting ionic liquids for biomolecules: Solubility,stability and applications

The technological utility of biomolecules (e.g. proteins, enzymes and DNA) can be significantly enhanced by combining them with ionic liquids (ILs) – potentially attractive ”green“ and ”designer“ solvents – rather than using in conventional organic solvents or water. In recent years, ILs have been used as solvents, cosolvents, and reagents for biocatalysis, biotransformation, protein preservation and stabilization, DNA solubilization and stabilization, and other biomolecule‐based applications. Using ILs can dramatically enhance the structural and chemical stability of proteins, DNA, and enzymes. This article reviews the recent technological developments of ILs in protein‐, enzyme‐, and DNA‐based applications. We discuss the different routes to increase biomolecule stability and activity in ILs, and the design of biomolecule‐friendly ILs that can dissolve biomolecules with minimum alteration to their structure. This information will be helpful to design IL‐based processes in biotechnology and the biological sciences that can serve as novel and selective processes for enzymatic reactions, protein and DNA stability, and other biomolecule‐based applications.