Chemistry of cyclodicarbaphosphatriazene: Synthesis and structural studies of pentaerythritoxy-bridged and lariat ether type spirocyclic derivatives

Reactions of dilithiated diols [HO(CH₂CH₂O)_n+1H, n = 1, 2 and 3] with 3,5-bis(N,N-dimethylamino)-1,1-dichlorodicarbaphosphazene (1) in THF have been carried out to afford the first examples of lariat ether type cyclocarbaphosphazene derivatives (C₄H₈O₃PN)(Me₂NCN)₂ (2), (C₆H₁₂O₄PN)(Me₂NCN)₂ (3) and (C₈H₁₆O₅PN)(Me₂NCN)₂ (4). Reaction of the tetrasodium salt of pentaerythritol with 1 and bis(morpholino)dichlorodicarbaphosphazene (1a) yielded the first examples of pentaerythritoxy-bridged cyclodicarbaphosphatriazenes [(Me₂NCN)₂PN(OCH₂)₂]₂C (5) and [(OC₄H₈NCN)₂PN(OCH₂)₂]₂C (6). The spectral and structural properties of these compounds are determined and compared with spirocyclic 1,3-propanedioxy derivative of 1 (7) and analogous compounds of cyclophosphazenes. The crystal structures of the compounds 4, 5 and 7 are reported. In addition, complexation studies of compounds 3 and 4 with Na^I, K^I, Ag^I and Cu^II ions were carried out by conductance measurements. The studies indicate mostly 1:1 complex formation between the metal ions and lariat ether type cyclocarbaphosphazene derivatives.     

Chitosan IFN-γ-pDNA Nanoparticle (CIN) Therapy for Allergic Asthma

Allergic subjects produce relatively low amounts of IFN-γ, a pleiotropic Th-1 cytokine that downregulates Th2-associated airway inflammation and hyperresponsiveness (AHR), the hallmarks of allergic asthma. Adenovirus-mediated IFN-γ gene transfer reduces AHR, Th2 cytokine levels and lung inflammation in mice, but its use would be limited by the frequency of gene delivery required; therefore, we tested chitosan/IFN-γ pDNA nanoparticles (CIN) for in situ production of IFN-γ and its in vivo effects. CIN were administered to OVA-sensitized mice to investigate the possibility of using gene transfer to modulate ovalbumin (OVA)-induced inflammation and AHR. Mice treated with CIN exhibit significantly lower AHR to methacholine challenge and less lung histopathology. Production of IFN-γ is increased after CIN treatment while the Th2-cytokines, IL-4 and IL-5, and OVA-specific serum IgE are reduced compared to control mice. AHR and eosinophilia are also significantly reduced by CIN therapy administered therapeutically in mice with established asthma. CIN was found to inhibit epithelial inflammation within 6 hours of delivery by inducing apoptosis of goblet cells. Experiments performed on STAT4-defective mice do not show reduction in AHR with CIN treatment, thus implicating STAT4 signaling in the mechanism of CIN action. These results demonstrate that mucosal CIN therapy can effectively reduce established allergen-induced airway inflammation and AHR.     

Chitosan IFN-gamma-pDNA Nanoparticle (CIN) Therapy for Allergic Asthma

BACKGROUND: Allergic subjects produce relatively low amounts of IFN-gamma, a pleiotropic Th-1 cytokine that downregulates Th2-associated airway inflammation and hyperresponsiveness (AHR), the hallmarks of allergic asthma. Adenovirus-mediated IFN-gamma gene transfer reduces AHR, Th2 cytokine levels and lung inflammation in mice, but its use would be limited by the frequency of gene delivery required; therefore, we tested chitosan/IFN-gamma pDNA nanoparticles (CIN) for in situ production of IFN-gamma and its in vivo effects. METHODS: CIN were administered to OVA-sensitized mice to investigate the possibility of using gene transfer to modulate ovalbumin (OVA)-induced inflammation and AHR. RESULTS: Mice treated with CIN exhibit significantly lower AHR to methacholine challenge and less lung histopathology. Production of IFN-gamma is increased after CIN treatment while the Th2-cytokines, IL-4 and IL-5, and OVA-specific serum IgE are reduced compared to control mice. AHR and eosinophilia are also significantly reduced by CIN therapy administered therapeutically in mice with established asthma. CIN was found to inhibit epithelial inflammation within 6 hours of delivery by inducing apoptosis of goblet cells. Experiments performed on STAT4-defective mice do not show reduction in AHR with CIN treatment, thus implicating STAT4 signaling in the mechanism of CIN action. CONCLUSION: These results demonstrate that mucosal CIN therapy can effectively reduce established allergen-induced airway inflammation and AHR.     

StressDB: a locally installable web-based relational microarray database designed for small user communities

We have built a microarray database, StressDB, for management of microarray data from our studies on stress-modulated genes in Arabidopsis. StressDB provides small user groups with a locally installable web-based relational microarray database. It has a simple and intuitive architecture and has been designed for cDNA microarray technology users. StressDB uses Windows(trade mark) 2000 as the centralized database server with Oracle(trade mark) 8i as the relational database management system. It allows users to manage microarray data and data-related biological information over the Internet using a web browser. The source-code is currently available on request from the authors and will soon be made freely available for downloading from our website athttp://arastressdb.cac.psu.edu.     

Interaction of light quality and benzimidazole on pigment contents and on photochemical activity of chloroplasts isolated from detached senescing wheat (Triticum aestivum) leaves

The possibilities of an interaction between light and the growth regulator benzimidazole in retarding senescence-induced changes in activity of chloroplasts isolated from detached wheat ( Triticum aestivum L. cv. Kalyansona) leaves have been investigated. The effect of benzimidazole on the rate of degradation of chlorophylls in light depended on the quality of light used. Far-red irradiation given to detached leaves in the presence of benzimidazole retarded the pigment loss more significantly than did white or red light of similar intensity. Senescence-induced loss in chloroplast photochemical activity was higher than the loss of chlorophylls. Loss of photosystem I activity was greater than photosystem II activity. Benzimidazole maintained the gramicidin-mediated enhancement in whole chain electron transport uniformly throughout the incubation period irrespective of the light quality. There was no effect of light and benzimidazole in retarding the loss in photochemical activity, although the same preserved the chlorophyll contents as well as characteristics of the chloroplast absorption spectrum.     

Seasonal variation and distribution of microfungi in forest soils of Delhi

Seasonal occurrence and abundance of microfungi at three different depths in tropical forest soils of Delhi were studied using the soil dilution and soil plate techniques. Surface layer in all the soil types exhibited the highest population and species number which gradually declined with depth increase. In total, 58 genera comprising 118 species were isolated of which theDeuteromycetes was represented by 38 genera and 90 species, thePhycomycetes by 10 genera and 18 species, theAscomycetes by 6 genera and 8 species, and theBasidiomycetes andMyxomycetes by single genus and species. Besides the surface vegetation, the edaphic and environmental factors had a profound influence on the occurrence and distribution of microfungi at various depths of soils.     

Taxonomic description and draft genome of <Emphasis Type="Italic">Pseudomonas sediminis</Emphasis> sp. nov., isolated from the rhizospheric sediment of <Emphasis Type="Italic">Phragmites karka</Emphasis>

The taxonomic position of a Gram-stain-negative, rod-shaped bacterial strain, designated PI11^T, isolated from the rhizospheric sediment of Phragmites karka was characterized using a polyphasic approach. Strain PI11^T could grow optimally at 1.0% NaCl concentration with pH 7.0 at 30°C and was positive for oxidase and catalase but negative for hydrolysis of starch, casein, and esculin ferric citrate. Phylogenetic analysis of 16S rRNA gene sequences indicated that the strain PI11^T belonged to the genus Pseudomonas sharing the highest sequence similarities with Pseudomonas indoloxydans JCM 14246^T (99.72%), followed by, Pseudomonas oleovorans subsp. oleovorans DSM 1045^T (99.29%), Pseudomonas toyotomiensis JCM 15604^T (99.15%), Pseudomonas chengduensis DSM 26382^T (99.08%), Pseudomonas oleovorans subsp. lubricantis DSM 21016^T (99.08%), and Pseudomonas alcaliphila JCM 10630^T (99.01%). Experimental DNA-DNA relatedness between strain PI11^T and P. indoloxydans JCM 14246^T was 49.4%. The draft genome of strain PI11^T consisted of 4,884,839 bp. Average nucleotide identity between the genome of strain PI11^T and other closely related type strains ranged between 77.25–90.74%. The polar lipid pattern comprised of phosphatidylglycerol, diphosphatidylglycerol, and phosphatidylcholine. The major (> 10%) cellular fatty acids were C_18:1ω6c/ω7c, C_16:1ω6c/ω7c, and C_16:0. The DNA G + C content of strain PI11^T was 62.4 mol%. Based on the results of polyphasic analysis, strain PI11^T was delineated from other closely related type strains. It is proposed that strain PI11^T represents represents a novel species of the genus Pseudomonas, for which the name Pseudomonas sediminis sp. nov. is proposed. The type strain is PI11^T (= KCTC 42576^T = DSMZ 100245^T).     

Prevalence of hard tick infestations in cattle of Mizoram,India

The present study was conducted to determine the prevalence of hard tick infestations in cattle of Mizoram from April 2017 to March 2018. The prevalence of hard tick infestations was studied in relation to sex and age of animals and seasonal changes in a year. Cattle of selected places were examined carefully for the presence of ticks and in positive cases ticks were collected manually and identified on the basis of morphological characters. A total of 713 cattle were examined and out of which 452 (63.39%) cattle were found to be infested with hard ticks and the prevalent tick species was Rhipicephalus (Boophilus) microplus. A significantly (p < 0.01) higher infestation was observed in female cattle (66.43%) than males (48.83%). Age-wise highest prevalence of tick infestations was found in 1–5 years (73.41%) age group followed by >5 years age group (61.92%) and < 1 year (42.65%) age group, respectively. Seasonally, the prevalence of hard tick infestation was found highest (p < 0.01) in monsoon (77.91%) and lowest in winter (43.16%). The present study provides data on tick infestation in cattle of Mizoram, India.     

Phenotypic diversity and stability of ecosystem processes.

The resistance of an ecosystem to perturbations and the speed at which it recovers after the perturbations, which is called resilience, are two important components of ecosystem stability. It has been suggested that biodiversity increases the resilience and resistance of aggregated ecosystem processes. We test this hypothesis using a theoretical model of a nutrient-limited ecosystem in a heterogeneous environment. We investigate the stability properties of the model for its simplest possible configuration, i.e. , a system consisting of two plant species and their associated detritus and local resource depletion zones. Phenotypic diversity within the plant community is described by differences in the nutrient uptake and mortality rates of the two species. The usual measure of resilience characterizes the system as a whole and thus also applies to aggregated ecosystem processes. As a rule this decreases with increased diversity, though under certain conditions it is maximum for an intermediate value of diversity. Resistance is a property that characterizes each system component and process separately. The resistance of the inorganic nutrient pools, hence of nutrient retention in the ecosystem, decreases with increased diversity. The resistance of both total plant biomass and productivity either monotonically decreases or increases over part of the parameter range with increased diversity. Furthermore, it is very sensitive to parameter values. These results support the view that there is no simple relationship between diversity and stability in equilibrium deterministic systems, whether at the level of populations or aggregated ecosystem processes. We discuss these results in relation to recent experiments.     

Roles of two surface residues near the access channel in the substrate recognition by cytochrome P450cam

Detailed stopped-flow kinetics of binding of 1R-camphor to cytochrome P450cam has been studied at different temperatures for the wild type as well as for two site specific mutants T192E and S190D of the enzyme, where the surface exposed Threonine and Serine residues were mutated by acidic amino acids. The near-UV and visible circular dichroism spectra as well as the intrinsic fluorescence spectra of the WT and mutant enzymes showed that the mutation of the enzyme did not affect the tertiary structure of the enzyme over the temperature range 4-30 degrees C. The S190D mutation did not show any significant change in the rate constants of the substrate association while they were much lower in the T192E mutant compared to the WT enzyme. The activation energies for substrate association and dissociation processes were determined from the analysis of temperature dependence of the rate constants by the Arrhenius equation over the temperature range 4-19 degrees C. The activation energy for the substrate association was found to be significantly higher in the T192E mutant compared to the S190D mutant or the WT enzyme. The results showed that the Threonine 192 that resides on the F-G loop and directed towards the putative substrate access channel of the enzyme, plays an important role in recognition of the substrate at the surface of the enzyme. These results showed that though the active site of the enzyme resides deep inside the protein matrix, the substrate is recognized at the surface of the enzyme and directed towards the active site through the access channel.