Salt-avoidance tropism in Arabidopsis thaliana

The orientation of plant root growth is modulated by developmental as well as environmental cues. Among the environmental factors, gravity has been extensively studied because of its overpowering effects in modulating root growth direction. However, our knowledge of the effects of other abiotic signals that influence root growth direction is largely unknown. Recently, we have shown that high salinity can modify root growth direction by inducing rapid amyloplast degradation in root columella cells of Arabidopsis thaliana. By exploiting salt overly sensitive (sos) mutants and PIN2 expression analyses, we have shown that the altered root growth direction in response to salt is mediated by ion disequilibrium and is correlated with PIN2 mRNA abundance and expression and localization of the protein. Our study demonstrates that the SOS pathway may mediate this process. Here we discuss our data from broader perspectives. We propose that salt-induced modification of root growth direction is a salt-avoidance behavior, which is an active adaptive mechanism for plants grown under saline conditions. Furthermore, high salinity also stimulates alteration of gravitropic growth of shoots. These findings illustrate that plants have a fine and sophisticated sensory and communication system that enable plants to dynamically and efficiently cope with rapidly changing environment.Key words: abidopsis, adaptation, avoidance, root, salt stress, tropic growthOwing to their sessile nature, plant roots are constantly bombarded with various environmental stimuli from the soil, such as gravity, physical obstacles and imbalanced distribution of water and/or nutrients and high salinity. Where to grow is an important developmental decision in the life cycle of a plant that is crucial for its adaptation and the subsequent reproductive success. The proper orientation of root growth is shaped by both the developmental inputs and external signals.^1,2 The overwhelming environmental factor that modulates root growth direction is gravity, and plant primary roots grow downward toward the gravity vector. This directed growth of root in response to gravity is named as tropic growth to gravity or gravitropism. Studies of gravity perception and signaling pathway of the root cap at the primary root of Arabidopsis strongly support the starch statolith hypothesis.³ In this hypothesis, the columella cells in the root cap, which contain sedimentable amyloplasts, are the gravity-perceptive site in roots. The inner columella cells of the second tier have been proposed as making the greatest contribution to root gravitropism.⁴ Upon gravity stimulation, cytosolic ions such as Ca²⁺ and rapid cytoplasmic alkalization may be involved in gravity signal transduction.^5–7 Asymmetric distribution of auxin in roots caused by basipetal transport mainly through the auxin efflux carrier PIN-FORMED2 (PIN2), which is distributed asymmetrically within the cells, results in gravitropic root response of the root elongation zone.^8,9In contrast to our understanding of gravitropism of root, our knowledge of tropistic responses of root to other major environmental stimuli, such as water availability, imbalanced nutrient distribution and high salinity, and the interplay between these stimuli in determining the directional growth of root remains enigmatic. Recent studies have confirmed the existence of hydrotropism and the molecular genetic basis of the tropistic growth of root to water in determining the final direction of root growth starts to be deciphered.^10–12 Hydrotropic growth of roots is an important trait for plants to actively find water and to optimize their fitness under drought condition. Salinity is another major constraint to root system development, and limits the productivity of agricultural crops and the distribution of plant species.^13–15 It is known that salt stress-induced disturbed balance of ions is the primary cause for inhibition of plant growth and subsequent yield reduction. How does root minimize entrance of harmful ions and subsequently avoid salt injury? Does plant have capacity to sense salt signal, and prevent potentially harmful ions reaching root and shoot?Previous studies have shown that plant use different strategies to avoid salt injury at various levels. After Na⁺ enters the root cells, the Casparian strip can restrict the movements of the harmful ion into the xylem.¹⁶ Root cells also avoid salt injury by extruding Na⁺ actively back to the outside solution. This energy-dependent ion efflux from cytosol across the plasma membrane is mediated by SOS1 gene, a Na⁺-H⁺ antiporter, which is regulated by at least other genes, SOS3 (calcium binding protein) and SOS2 (serine/threonine kinase). This is the well characterized SOS (Salt Overly Sensitive) signaling pathway.^17,18 Another way for plant root cells to avoid ion injury is to accumulate Na⁺ into vacuole. Vacuolar compartmentation of Na⁺ is also in part regulated by Na⁺-H⁺ antiporters, such as AtNHX1.¹⁹ These findings reveal mechanisms of how plants avoid Na⁺ injury after passive entrance of sodium ions into root cells. We questioned whether a plant is capable of actively preventing the harmful ions from reaching root cells or escape from high salinity in the environment, and how plant roots respond to changing salt conditions, because salt distribution is unbalanced under natural saline conditions, especially after rain and irrigation. With a new assay that allows us to specifically address how plant roots respond to changing salt levels, we discovered an alternative adaptive mechanism for plant root to avoid salt injury.²⁰We set up a two-layer medium assay in which a sodium ion gradient would be generated. A normal nutrient agar medium is at the top of the growth bottle and an agar with salt-stressed medium is in the bottom of the bottle. This simple assay allows us to monitor root growth and orientation. The roots of the wild type seedlings penetrated the interface of the layers and grew straight downwards exhibiting gravitropism, when both layers were MS media. In contrast, when the bottom medium contained NaCl, roots of seedlings grew downward first, and then curved and grew upward toward the lower levels of salt. Roots started to bend upward at an early stage even before contacting high-salt medium (250 mM NaCl) on the bottom. The results indicate that roots can sense ion gradients in the growing environment and transduce the signal, combine with internal signals to make decisions that enable roots to stay away from high salt.^21,22 Here, we would like to propose this salt-induced tropic growth as a salt-avoidance tropism, which is an important adaptive behavior for plant roots to avoid salt injury and direct them toward their goal of optimal fitness.²³ Because salt stress inhibits root elongation, we tested impact of salt-induced negative gravitropism on the root growth. The results showed that inhibitory effect of salt on root growth was largely alleviated with this tropic curve (Fig. 1), further verifying our hypothesis that the salt-induced developmental plasticity is a salt-avoidance behavior (Fig. 2).Open in a separate windowFigure 1Effects of salt on root elongation of Arabidopsis thaliana seedlings from different salt treatments. The inhibitory effect of salt stress on root growth was greatly alleviated in the wild type (Col-0) when root growth of the seedlings was analyzed using a two-layer medium assay (black bars). The MS nutrient medium is on the top, and NaCl concentrations in the media on the bottom are 0, 150 and 250 mM. More severe inhibition of root growth of the seedlings by various levels of NaCl in a root bending assay (white bars) was observed. Data represents means of measurements from >40 individuals from three independent experiments. Bars represent standard error.Open in a separate windowFigure 2An illustrative model of the sensing and response by the plant root when grown under different saline conditions. This model proposes two major mechanisms of salt responses by plants, where salt tolerance is the ability to function while stressed; Salt avoidance is the capacity to stay away from salt stress when growing in changing saline conditions.Another important point that we would like to bring out based on our observation in this work is that salinity also stimulated shoot positive gravitropism or negative phototropism. The observation implicates long-distance communication from root to shoot during plant salt response in the stressed plants. The exact biological function of shoot tropic growth, the signals in this long-distance communication, and underlying molecular mechanism still remains unknown.In conclusion, our study has revealed a novel complex adaptive mechanism that provides plants a capacity for avoiding injury from salt. The hypothesis we have proposed here should provide novel insights into plant stress avoidance. Further analysis using a combinatorial approach, mutant analysis and genomics, is required to decipher the molecular network underlying this salt-avoidance behavior.     

Woody plant encroachment reduces species richness of herb‐rich woodlands in southern Australia

Abstract Woody plants have been increasing in many woodland and savanna ecosystems owing to land use changes in recent decades. We examined the effects of encroachment by the indigenous shrub Leptospermum scoparium (Myrtaceae) on herb‐rich Eucalyptus camaldulensis woodlands in southern Australia. Species richness and compositional patterns were examined under the canopy of L. scoparium and in surrounding open areas to determine the species most susceptible to structural changes. Richness was significantly lower in areas of moderate to high L. scoparium cover (>15%), suggesting that a threshold shrub cover caused major change in this ecosystem. Shrubs were associated with a significant reduction in above‐ground biomass of the ground‐layer flora and a significant shift in community composition. The few species that were positively associated with high L. scoparium cover were also common in the woodland flora; no new species were recorded under the shrub canopy. Important environmental changes associated with L. scoparium cover were decreased light availability and increased litter cover, which were likely a consequence of encroachment. Leptospermum scoparium cover was also associated with greater surface soil moisture, which may be a consequence of increased shading under the shrub canopy or indicate favourable soil conditions for L. scoparium establishment. Reductions in species richness and abundance of the germinable seed bank were found in soil samples taken from under L. scoparium. With ongoing recruitment of L. scoparium and consequent increases in shrub cover, ground‐layer diversity in these species‐rich woodlands should continue to decline over time.     

Transgenic nonhuman primates for neurodegenerative diseases

Animal models that represent human diseases constitute an important tool in understanding the pathogenesis of the diseases, and in developing effective therapies. Neurodegenerative diseases are complex disorders involving neuropathologic and psychiatric alterations. Although transgenic and knock-in mouse models of Alzheimer's disease, (AD), Parkinson's disease (PD) and Huntington's disease (HD) have been created, limited representation in clinical aspects has been recognized and the rodent models lack true neurodegeneration. Chemical induction of HD and PD in nonhuman primates (NHP) has been reported, however, the role of intrinsic genetic factors in the development of the diseases is indeterminable. Nonhuman primates closely parallel humans with regard to genetic, neuroanatomic, and cognitive/behavioral characteristics. Accordingly, the development of NHP models for neurodegenerative diseases holds greater promise for success in the discovery of diagnoses, treatments, and cures than approaches using other animal species. Therefore, a transgenic NHP carrying a mutant gene similar to that of patients will help to clarify our understanding of disease onset and progression. Additionally, monitoring disease onset and development in the transgenic NHP by high resolution brain imaging technology such as MRI, and behavioral and cognitive testing can all be carried out simultaneously in the NHP but not in other animal models. Moreover, because of the similarity in motor repertoire between NHPs and humans, it will also be possible to compare the neurologic syndrome observed in the NHP model to that in patients. Understanding the correlation between genetic defects and physiologic changes (e.g. oxidative damage) will lead to a better understanding of disease progression and the development of patient treatments, medications and preventive approaches for high risk individuals. The impact of the transgenic NHP model in understanding the role which genetic disorders play in the development of efficacious interventions and medications is foreseeable.     

RNA silencing-mediated resistance to a crinivirus (Closteroviridae) in cultivated sweetpotato (Ipomoea batatas L.) and development of sweetpotato virus disease following co-infection with a potyvirus

Sweetpotato chlorotic stunt virus (SPCSV; genus Crinivirus , family Closteroviridae) is one of the most important pathogens of sweetpotato ( Ipomoea batatas L.). It can reduce yields by 50% by itself and cause various synergistic disease complexes when co-infecting with other viruses, including sweetpotato feathery mottle virus (SPFMV; genus Potyvirus , family Potyviridae). Because no sources of true resistance to SPCSV are available in sweetpotato germplasm, a pathogen-derived transgenic resistance strategy was tested as an alternative solution in this study. A Peruvian sweetpotato landrace 'Huachano' was transformed with an intron-spliced hairpin construct targeting the replicase encoding sequences of SPCSV and SPFMV using an improved genetic transformation procedure with reproducible efficiency. Twenty-eight independent transgenic events were obtained in three transformation experiments using a highly virulent Agrobacterium tumefaciens strain and regeneration through embryogenesis. Molecular analysis indicated that all regenerants were transgenic, with 1–7 transgene loci. Accumulation of transgene-specific siRNA was detected in most of them. None of the transgenic events was immune to SPCSV, but ten of the 20 tested transgenic events exhibited mild or no symptoms following infection, and accumulation of SPCSV was significantly reduced. There are few previous reports of RNA silencing-mediated transgenic resistance to viruses of Closteroviridae in cultivated plants. However, the high levels of resistance to accumulation of SPCSV could not prevent development of synergistic sweet potato virus disease in those transgenic plants also infected with SPFMV.     

The balance between the foliage projective covers of overstorey and understorey strata in Australian vegetation

Foliage Projective Cover of the overstorey (canopy) of a‘climax’community appears to reach an equilibrium value determined largely by the prevailing climate. Overstorey FPC decreases in‘climax’communities in a graded series from humid to arid regions. Understorey cover (of all strata below the canopy) in‘climax’communities attains a balance with overstorey FPC. Disturbance (gaps, microhabitats, fire, overgrazing, invasion of woody weeds, etc.) may reduce the overstorey cover which will be compensated by an increase in understorey cover. Secondary succession back to the‘climax’structure will follow a path maintaining an inverse linear relationship between understorey cover and overstorey cover. At the same time, species diversity appears to decrease as overstorey cover increases.     

Nutritional Study of Three Strains of Naegleria gruberi*

Naegleria gruberi strains cloned from amebas isolated from a Vero cell culture (“TS”), a sewer drainage ditch (“PD”), and an established laboratory line (“S”) were morphologically identical except for differences in size and flagellate transforming ability. Cultivation on a Trypticase-yeast extract-glucose medium (“TYG”) fortified with autoclaved E. coli resulted in increased cell size of 2 strains. Differences also were noted in growth rates and optimal growth temperatures. The autoclaved E. coli in TYG medium was replaceable with serum only for strains TS and PD. A basal salts medium + autoclaved E. coli supported growth of all 3 strains, but the basal salts medium + serum would not support growth of any of the strains.     

The Influence of Leaf Removal upon the Development of the Grain of Winter Wheat

The paper describes the effects on grain development of theremoval of half the flag leaf, the entire flag leaf and allthe leaves from selected main shoots of a field crop of wheat,cultivar Maris Ranger, 7 days after anthesis. None of the treatmentsreduced grain weights in the 14 days following defoliation.Even in the next 14 days only the more severe defoliations reducedgrain weight, with the most severe treatment causing the greatestreduction. Ultimately the rate of grain growth in plants onwhich only a half of the flag leaf had been removed also fellbehind that of the controls. Final grain yields were in theorder, control plants, > plants with half the flag leaf removed,> the entire flag leaf removed, > all the leaves removed.The significance of these results in interpreting the factorslimiting grain growth in wheat is discussed.     

Specific Ribonucleoprotein Fragment from the 30S Subunit of <Emphasis Type="Italic">E. coli</Emphasis> Ribosomes

WE describe here a new approach to the determination of the three dimensional arrangement of the proteins within the ribosome, based on controlled degradation with nuclease. We suggest that by isolating ribonucleoprotein (RNP) fragments and determining which particular proteins each fragment contains, it should eventually be possible to construct a detailed “map” of the protein arrangement. The “mapping” problem has already received attention in various laboratories. Mizushima and Norrtura¹ have shown that the proteins of the E. coli 30S ribosomal subunit assemble with 16S RNA in a highly specific order. Further, the reactivity of the 30S particle towards proteolytic enzymes² and protein-modifying reagents³ shows a striking correlation with Mizushima and Nomura's “assembly map”¹, in that the first group of proteins in the assembly process seems to be protected in the completed particle.     

Indole(ethyl)amine N-Methyltransferase in Human Brain

TANIMUKAI et al.¹, using gas-liquid separation, correlated the appearance of a bufotenin-like substance in urine and the onset of psychosis in latent schizophrenics brought on by administration of a monoamine oxidase inhibitor with amino-acid precursors of indoleamines and methyl groups. Serious doubt about endogenous bufotenin as the cause of psychiatric disturbance was cast by research demonstrating that intravenously administered bufotenin produced nothing but bizarre cardiovascular symptoms in man^{2, 3}. One objection to such work is that bufotenin may not easily cross the blood-brain barrier. Recent preliminary evidence gathered in our laboratories from rats infused intraventricularly with bufotenin has suggested that this substance is at least as potent as its powerfully hallucinogenic 5-methoxy congener (unpublished results of D. Segal and A. J. M.).