ASSOCIATION OF SYNTAXIN WITH SNAP 25 AND VAMP (SYNAPTOBREVIN) IN TORPEDO SYNAPTOSOMES

Two proteins of the presynaptic plasma membrane, syntaxin and SNAP 25, and VAMP/synaptobrevin, a synaptic vesicle membrane protein, form stable protein complexes which are involved in the docking and fusion of synaptic vesicles at the mammalian brain presynaptic membrane. Similar protein complexes were revealed in an homogeneous population of cholinergic synaptosomes purified from Torpedo electric organ by combining velocity sedimentation and immunoprecipitation experiments. After CHAPS solubilization, virtually all the nerve terminal syntaxin was found in the form of large 16 S complexes, in association with 65% of SNAP 25 and 15% of VAMP. Upon Triton X100 solubilization, syntaxin was still recovered in association with SNAP 25 and VAMP but in smaller 8 S complexes. A small (2–5%) percentage of the nerve terminal 15 kDa proteolipid subunit of the v-H⁺ ATPase and of mediatophore was copurified with syntaxin, using two different antisyntaxin monoclonal antibodies. The use of an homogeneous population of peripheral cholinergic nerve terminals allowed us to extend results on the composition of the brain presynaptic protein complexes to the Torpedo electric organ synapse, a model of the rapid neuromuscular synapses. Copyright © 1996 Elsevier Science Ltd     

Barley aleurone cells contain two types of vacuoles. Characterization Of lytic organelles by use of fluorescent probes

Light microscopy was used to study the structure and function of vacuoles in living protoplasts of barley (Hordeum vulgare cv Himalaya) aleurone. Light microscopy showed that aleurone protoplasts contain two distinct types of vacuole: the protein storage vacuole and a lysosome-like organelle, which we have called the secondary vacuole. Fluorescence microscopy using pH-sensitive fluorescent probes and a fluorogenic substrate for cysteine proteases showed that both protein storage vacuoles and secondary vacuoles are acidic, lytic organelles. Ratio imaging showed that the pH of secondary vacuoles was lower in aleurone protoplasts incubated in gibberellic acid than in those incubated in abscisic acid. Uptake of fluorescent probes into intact, isolated protein storage vacuoles and secondary vacuoles required ATP and occurred via at least two types of vanadate-sensitive, ATP-dependent tonoplast transporters. One transporter catalyzed the accumulation of glutathione-conjugated probes, and another transported probes not conjugated to glutathione.     

Shell-Boring Mechanism of the Gastropod, Purpura (Thais) lapillus: a Physiological Demonstration of the Role of Carbonic Anhydrase in the Dissolution of CaCO3

Measurement of carbonic anhydrase (CA) activity in homogenatesof accessory boring organs of the muricid gastropod,Purpuralapillus, by Meldrum and Roughton's manometric method showedthat CA is always present in boring as well as in inactive ABOs,but in variable amounts. Tests by the same method on whole ABOsin an isotonic solution were negative, proving that CA remainsintracellularly. Experiments in vivo on inhibition and activation demonstratedclearly that CA is responsible for demineralization of the valvesof lamellibranchs by Purpura:(a) at low concentrations of Diamox,partial inhibition of the enzymeoccurred, that is, the numberof complete holes decreased or disappeared and etchings increased;and at higher concentrations full inhibition took place. Inhibitionis reversed when snails are replaced in normal sea water; (b)action of pure CO₂ or mixtures of CO₂ and O₂ accelerated boring:in the optimal mixture, three times more boreholes were producedby snails than in the controls, and in about half the time.Under these conditions the reaction catalyzed by CA goes tothe right with hydration of CO₂ and is accompanied by releaseof H⁺ ions; in the presence of an increased concentration ofCO₂, the reaction is intensified and results in an additionalrelease of H⁺ ions. Consequently, destruction of CaCO₃ by theABO of Purpura in sea water enriched with CO₂ is accelerated. To identify the nature of the exchanged ion, we tested the effectof NaCl and KC1 on the boring mechanism in vivo by increasingthe amount of these salts in the seawater of snails with prey.In this case augmentation of the boring activity was noticed.These results suggest that the boring activity is accompaniedby complex ionic exchanges.     

Identifying rare and common disease associated variants in genomic data using Parkinson’s disease as a model

Background

Genome-wide association studies have been successful in identifying common genetic variants for human diseases. However, much of the heritable variation associated with diseases such as Parkinson’s disease remains unknown suggesting that many more risk loci are yet to be identified. Rare variants have become important in disease association studies for explaining missing heritability. Methods for detecting this type of association require prior knowledge on candidate genes and combining variants within the region. These methods may suffer from power loss in situations with many neutral variants or causal variants with opposite effects.

Results

We propose a method capable of scanning genetic variants to identify the region most likely harbouring disease gene with rare and/or common causal variants. Our method assigns a score at each individual variant based on our scoring system. It uses aggregate scores to identify the region with disease association. We evaluate performance by simulation based on 1000 Genomes sequencing data and compare with three commonly used methods. We use a Parkinson’s disease case–control dataset as a model to demonstrate the application of our method.Our method has better power than CMC and WSS and similar power to SKAT-O with well-controlled type I error under simulation based on 1000 Genomes sequencing data. In real data analysis, we confirm the association of α-synuclein gene (SNCA) with Parkinson’s disease (p = 0.005). We further identify association with hyaluronan synthase 2 (HAS2, p = 0.028) and kringle containing transmembrane protein 1 (KREMEN1, p = 0.006). KREMEN1 is associated with Wnt signalling pathway which has been shown to play an important role for neurodegeneration in Parkinson’s disease.

Conclusions

Our method is time efficient and less sensitive to inclusion of neutral variants and direction effect of causal variants. It can narrow down a genomic region or a chromosome to a disease associated region. Using Parkinson’s disease as a model, our method not only confirms association for a known gene but also identifies two genes previously found by other studies. In spite of many existing methods, we conclude that our method serves as an efficient alternative for exploring genomic data containing both rare and common variants.

Electronic supplementary material

The online version of this article (doi:10.1186/s12929-014-0088-9) contains supplementary material, which is available to authorized users.     

Impact of temperature on Na2Sr(PO4)F:Eu3+ phosphor

In this article, we report the synthesis of Na₂Sr_1‐x(PO₄)F:Eu_x phosphor via a combustion method. The influence of different annealing temperatures on the photoluminescence properties was investigated. The phosphor was excited at both 254 and 393 nm. Na₂Sr_1‐x(PO₄)F:Eu_x³⁺ phosphors emit strong orange and red color at 593 and 612 nm, respectively, under both excitation wavelengths. Na₂Sr_1‐x(PO₄)F:Eu_x³⁺ phosphors annealed at 1050°C showed stronger emission intensity compared with 600, 900 and 1200°C. Moreover, Na₂Sr_1‐x(PO₄)F:Eu_x³⁺ phosphor was found to be more intense when compared with commercial Y₂O₃:Eu³⁺ phosphor. Copyright © 2013 John Wiley & Sons, Ltd.     

Leaf morphology of hosts and nonhosts of the thrips Heliothrips haemorrhoidalis (Bouché)

This study highlights the morphological differences between two groups of plants; those that are recorded as hosts of the thrips Heliothrips haemorrhoidalis (Bouché) and those that remain free from infestation. Scanning electron microscope techniques were used to describe the morphology of the leaf surface of 19 species in order to help identify which morphological features could play a role in the selection of plant species by thrips from among a diverse botanical collection. H. haemorrhoidalis had a preference for species with leaves that were coriaceous, with one or both surfaces being smooth. Plants evading these thrips commonly possessed glandular trichomes. Thus morphology may have a role in deterring thrips from the leaf surface, as well as influencing the behaviour of predators that control thrips. Further detailed studies into the chemistry of leaves of hosts and nonhost species may help to further our understanding of selection mechanisms.  © 2006 The Linnean Society of London, Botanical Journal of the Linnean Society , 2006, 152 , 109–130.     

Erratum

Neurotransmitter receptor trafficking and the regulation of synaptic strength. Traffic 2001:2(7):437–448.     

Oviposition patterns and larval damage by the invasive horse‐chestnut leaf miner Cameraria ohridella on different species of Aesculus

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