An Anisotropic Internal-External Bone Adaptation Model Based on a Combination of CAO and Continuum Damage Mechanics Technologies

Abstract

In this work, a complete internal-external bone-remodelling scheme is presented and implemented into a finite element code. This model uses a combination of an anisotropic internal remodelling model based on a new Continuum "Damage-Repair" theory and an external adaptation approach that follows the idea, early introduced by Mattheck et ah, to simulate the growth behaviour of biological systems, known as CAO method. This combined scheme qualitatively resembles most of the main features of the bone adaptive behaviour, like the bone mass distribution (heterogeneity and porosity), the directional internal structure (anisotropy), the alignment of the microstructure with the constitutive principal directions and these with those of the stress tensor when permanently loaded by a unique stress state (WolfFs law). It is also thermodynamically consistent, fulfilling a principle of minimum mechanical dissipation. Finally, the comparison between the predicted results and the ones obtained by different experimental tests allows us to conclude that this model is able of reproducing qualitatively the global behaviour of bone tissue when subjected to external mechanical loads.     

The incidence and distribution of viruses infecting lettuce, cultivated Brassica and associated natural vegetation in Spain

A virus survey was conducted during the spring and autumn of 2001 and 2002 to determine the presence, prevalence and distribution in Spain of the viruses that are most commonly found infecting lettuce and Brassica worldwide. Crop plants showing virus symptoms from the principal lettuce and Brassica-growing regions of Spain, and some samples of the annual and perennial flora nearby, were tested by enzyme-linked immunosorbent assays using specific commercial antibodies against the following viruses: Alfalfa mosaic virus (AMV), Broad bean wilt virus 1 (BBWV-1), Beet western yellows virus (BWYV), Cauliflower mosaic virus (CaMV), Cucumber mosaic virus (CMV), Lettuce mosaic virus (LMV), Pea seed-borne mosaic virus (PSbMV), Turnip mosaic virus (TuMV) and Tomato spotted wilt virus (TSWV). Samples were also tested with a Potyvirus genus antibody. Virus incidence was much lower in spring than in autumn, especially in 2001. In spring 2002, CMV and LMV were the most prevalent viruses in lettuce, while CaMV was the most important virus present in Brassica crops grown in Navarra, followed by CMV and BWYV. In the autumn, the spectrum of viruses was different; potyviruses were widespread in lettuce grown in Madrid, but TSWV and BWYV were predominant in the Murcia region. The prevalent Potyvirus detected in lettuce fields was LMV, but none of the samples collected were positive for PSbMV or TuMV. In Brassica crops, TSWV was the most abundant in autumn-sown crops, especially in the Navarra region. All of the viruses present in lettuce and Brassica were also frequently detected in their associated natural vegetation at the same time, suggesting that they probably play an important role as virus reservoirs. Sonchus spp. were particularly common and were frequently infected with CMV, LMV and BWYV. Another common species, Chenopodium album, was often infected with TSWV and BWYV. Multiple infections were common, especially in non-crop plants, and the most common combination was BWYV and TSWV. The role of weeds in the epidemiology of viruses that infect lettuce and Brassica crops in Spain is discussed.     

Genetic relationships among populations of Aedes aegypti from Uruguay and northeastern Argentina inferred from ISSR‐PCR data

Aedes aegypti (L.) (Diptera: Culicidae), the main vector of yellow fever and dengue viruses, was eradicated from Argentina between 1955 and 1963, but reinvaded the country in 1986. In Uruguay, the species was reintroduced in 1997. In this study we used highly polymorphic inter‐simple sequence repeats (ISSR) markers to analyse the genetic structure of Ae. aegypti populations from Uruguay and northeastern Argentina to identify possible colonization patterns of the vector. Overall genetic differentiation among populations was high (F_ST = 0.106) and showed no correlation with geographic distance, which is consistent with the short time since the reintroduction of the species in the area. Differentiation between pairs of Argentine populations (F_ST 0.072 to 0.221) was on average higher than between Uruguayan populations (F_ST?0.044 to 0.116). Bayesian estimation of population structure defined four genetic clusters and most populations were admixtures of two of them: Mercedes and Treinta y Tres (Uruguay) were mixtures of clusters 1 and 3; Salto (Uruguay) and Paraná (Argentina) of clusters 1 and 4; Fray Bentos (Uruguay) of clusters 2 and 3, and Gualeguaychú (Argentina) of clusters 2 and 3. Posadas and Buenos Aires in Argentina were fairly genetically homogeneous. Our results suggest that Ae. aegypti recolonized Uruguay from bordering cities in Argentina via bridges over the Uruguay River and also from Brazil.     

Silent Genes: Antimicrobial Resistance and Antibiotic Production

Silent genes are DNA sequences that are generally not expressed or expressed at a very low level. These genes become active as a result of mutation, recombination, or insertion. Silent genes can also be activated in laboratory conditions using pleiotropic, targeted genome-wide, or biosynthetic gene cluster approaches. Like every other gene, silent genes can spread through horizontal gene transfer. Most studies have focused on strains with phenotypic resistance, which is the most common subject. However, to fully understand the mechanism behind the spreading of antibiotic resistance, it is reasonable to study the whole resistome, including silent genes. Open in a separate window     

Genome Size inAllium: In Quest of Reproducible Data

ComparingAlliumgenome size measurements of different authors,we noticed that the estimates for certain species diverge morestrongly than one would have expected in view of the methodologicaladvantages of the material. As the matter has theoretical significancefor explaining the biological role of genome size variation,we measured, by Feulgen densitometry, 28 species and altogether57 accessions or cultivars. Flow cytometric measurements supplementedthese data. The current hypothesis of a discontinuous and step-wisedistribution of DNA amounts inAlliumseems questionable, as mostof our DNA values did not appear in the corresponding DNA groupas proposed previously. On the other hand, we can confirm thatthere is a significant negative correlation between genome sizeof a species and its first month of flowering, but only in diploids,or in diploids and polyploids if only the basic genome size(2Cxlevel) is considered. We compared our results with thoseof nine other publications. Only 29 of 60 2C values publishedpreviously deviate less than 10% from our data, the others deviatemore strongly, from 0.44- to 1.44-fold. The more comprehensivedata sets of various authors were compared by correlation analysiswith our data. Positive and mostly significant correlationswere seen in all tests, but nevertheless the degree of incongruencebetween studies was unsatisfactory in view of the much betterintra-laboratory reproducibility of the present data. The presentwork highlights the need for generally agreed improvements instandardization and preparative procedures of cytophotometricgenome size determination.Copyright 1999 Annals of Botany Company Allium, genome size, Feulgen densitometry, flow cytometry, discontinuous DNA content variation, nucleotype hypothesis, flowering time, data reproducibility, correlation analysis.     

The Evolution of Male and Female Parental Care in Fishes

In this paper we propose an explanation for (a) the predominanceof male care in fishes, and (b) the phylogenies and transitionsthat occur among care states. We also provide a general evolutionarymodel for studying the conditions under which parental careevolves. Our conclusions are as follows: (i) Parental care hasonly one benefit, the increased survivorship of young. It may,however, have three costs: a "mating cost," an "adult survivorshipcost," and a "future fertility cost." (ii) On average, malesand females will derive the same benefit from care. They probablyalso pay the same adult survivorship cost. However, their matingcost and future fertility costs may differ, (iii) A mating costusually applies only to males. However, this cost may be reducedby male territoriality and, in some situations, be entirelyremoved. Under this condition, natural selection on presentreproductive success is equivalent for males and females, (iv)When fecundity accelerates with body size in females, whilemale mating success follows a linear relationship with bodysize, future fertility costs of parental care are greater forfemales than males. Although further tests are needed, a preliminaryanalysis suggests this often may be the case in fishes. Thus,the predominance of male parental care in fishes is not explainedby males deriving greater benefits from care, but by males payingsmaller future costs. Males thus accrue a greater net fitnessadvantage from parental care (see expressions [6] and [12]).(v) The evolution of biparental care from uniparental male caremay occur because male care selects for larger egg sizes andincreased embryo investment by females. This increases the benefitto the female of parental care, (vi) By contrast, uniparentalfemale care may originate from biparental care when males areselected to desert. This occurs when female care creates a matingcost to males. In some cases male desertion may "lock" femalesinto uniparental care. However, in many other cases femalesmay be selected to desert, giving rise to "no care." (vii) Theorigin of uniparental female care from no care is rare in externallyfertilizing fishes. This is because the benefits of care rarelyoutweigh a female's future fertility costs (expression [9]).For internally fertilizing species, however, the benefit ofcare is high whereas the cost is probably low. Most of thesespecies have evolved embryo retention, (viii) When parentalcare begins with male care and moves to biparental care, ouranalysis suggests that care evolution will include cyclicaldynamics. Parental care in some fishes may thus be seen as transitionaland changing through evolutionary time rather than as an evolutionarilystable state. In theory, "no care" may be a phylogeneticallyadvanced state.     

Biogeography of the ubiquitous marine bacterium Alteromonas macleodii determined by multilocus sequence analysis

Twenty‐three isolates of the widely distributed marine bacteria Alteromonas macleodii have been analysed by multilocus sequence analysis combined with phylogenetic and multivariate statistical analyses. The strains originated from the Pacific Ocean, Mediterranean Sea, English Channel, Black Sea and Thailand. Using the nucleotide sequences of nine loci for each of the 23 isolates, a robust identification was achieved of different clades within the single species. Strains generally clustered with the depth in the water column from which the isolate originated. Strains also showed more recombination with isolates from the same vicinity, suggesting that genetic exchange plays a role in diversification of planktonic marine prokaryotes. This study thus shows for the first time for a large set of isolates of a species of planktonic marine prokaryotes that multilocus sequence analysis overcomes the problems associated with the analysis of individual marker genes or presence of extensive recombination events. It can thus achieve intraspecific identification to the level of genotypes and, by comparison with relevant environmental data, ecotypes.     

Molecular phylogeny of Iberian Fordini (Aphididae: Eriosomatinae): implications for the taxonomy of genera Forda and Paracletus

Abstract Mediterranean representatives of the galling aphid tribe Fordini (Hemiptera: Aphididae: Eriosomatinae) are usually grouped under the subtribe term Fordina. Aphids within Fordina display two‐year life cycles, alternating between Pistacia shrubs, where they induce conspicuous galls, and roots of Poaceae species. The high number of morphs present in a given species, the lack of knowledge of the complete cycle in some species, and the similarity between homologous morphs observed in different species pose many taxonomic problems in this group. We present results of a survey to elucidate the phylogenetic relationships among Fordini species present in the Iberian Peninsula and the Canary Islands. Sequences from the nuclear long‐wavelength opsin (LWO) and translation elongation factor 1α (EF‐1α) genes and from a region of the mitochondrial DNA containing the genes encoding the subunits six and eight of the F‐ATPase were used to infer relationships among 10 Fordina species, namely Smynthurodes betae, Aploneura lentisci, Baizongia pistaciae, two Geoica species (G. utricularia and G. setulosa), three species of Forda and two of Paracletus. Relationships between and within representatives of the genera Forda and Paracletus, both exemplifying taxonomic and ecological problems, were investigated in greater depth through extensive sampling and morphometric analysis. A total of eight, six and six samples from F. formicaria, F. marginata and F. riccobonii, respectively, were included in the survey, along with 40 and 4 samples classified initially as P. cimiciformis and P. donisthorpei, respectively. Our results are relevant to current studies on the evolution of host selection by aphids and on the evolution of gall morphology. Our phylogeny suggests that the group can be divided into two main clades. One clade is composed of aphids inducing small, low‐capacity galls on either P. atlantica or P. terebinthus (Smynthurodes betae and genera Forda and Paracletus). The second clade is composed of species inducing larger galls on P. lentiscus and P. terebinthus (Aploneura lentisci, Baizongia pistaciae and Geoica species). Our results suggest that revision of diagnostic characters used in the taxonomy of Paracletus is needed, and suggest Forda rotunda as a new synonym of Paracletus cimiciformis syn.n.     

Remote estimation of carbon dioxide uptake by a Mediterranean forest

The estimation of the carbon balance in ecosystems, regions, and the biosphere is currently one of the main concerns in the study of the ecology of global change. Current remote sensing methodologies for estimating gross primary productivity are not satisfactory because they rely too heavily on (i) the availability of climatic data, (ii) the definition of land‐use cover, and (iii) the assumptions of the effects of these two factors on the radiation‐use efficiency of vegetation (RUE). A new methodology is urgently needed that will actually assess RUE and overcome the problems associated with the capture of fluctuations in carbon absorption in space and over time. Remote sensing techniques such as the widely used reflectance vegetation indices (e.g. NDVI, EVI) allow green plant biomass and therefore plant photosynthetic capacity to be assessed. However, there are vegetation types, such as the Mediterranean forests, with a very low seasonality of these vegetation indices and a high seasonality of carbon uptake. In these cases it is important to detect how much of this capacity is actually realized, which is a much more challenging goal. The photochemical reflectance index (PRI) derived from freely available satellite information (MODIS sensor) presented for a 5‐year analysis for a Mediterranean forest a positive relationship with the RUE. Thus, we show that it is possible to estimate RUE and GPP in real time and therefore actual carbon uptake of Mediterranean forests at ecosystem level using the PRI. This conceptual and technological advancement would avoid the need to rely on the sometimes unreliable maximum RUE.     

Twentieth century increase of Scots pine radial growth in NE Spain shows strong climate interactions

Stem radial growth responds to environmental conditions, and has been widely used as a proxy to study long‐term patterns of tree growth and to assess the impact of environmental changes on growth patterns. In this study, we use a tree ring dataset from the Catalan Ecological and Forest Inventory to study the temporal variability of Scots pine (Pinus sylvestris L.) stem growth during the 20th century across a relatively large region (Catalonia, NE Spain) close to the southern limit of the distribution of the species. Basal area increment (BAI) was modelled as a function of tree size and environmental variables by means of mixed effects models. Our results showed an overall increase of 84% in Scots pine BAI during the 20th century, consistent with most previous studies for temperate forests. This trend was associated with increased atmospheric CO₂ concentrations and, possibly, with a general increase in nutrient availability, and we interpreted it as a fertilization effect. Over the same time period, there was also a marked increase in temperature across the study region (0.19 °C per decade on average). This warming had a negative impact on radial growth, particularly at the drier sites, but its magnitude was not enough to counteract the fertilization effect. In fact, the substantial warming observed during the 20th century in the study area did not result in a clear pattern of increased summer drought stress because of the large variability in precipitation, which did not show any clear time trend. But the situation may change in the future if temperatures continue to rise and/or precipitation becomes scarcer. Such a change could potentially reverse the temporal trend in growth, particularly at the driest sites, and is suggested in our data by the relative constancy of radial growth after ca. 1975, coinciding with the warmer period. If this situation is representative of other relatively dry, temperate forests, the implications for the regional carbon balance would be substantial.