Growth Inhibition of Phytopathogenic Fungi and Oomycetes by Basidiomycete Irpex lacteus and Identification of its Antimicrobial Extracellular Metabolites

In dual culture confrontation assays, basidiomycete Irpex lacteus efficiently antagonized Fusarium spp., Colletotrichum spp., and Phytophthora spp. phytopathogenic strains, with growth inhibition percentages between 16.7–46.3%. Antibiosis assays evaluating the inhibitory effect of soluble extracellular metabolites indicated I. lacteus strain inhibited phytopathogens growth between 32.0–86.7%. Metabolites in the extracellular broth filtrate, identified by UPLC-QTOF mass spectrometer, included nine terpenes, two aldehydes, and derivatives of a polyketide, a quinazoline, and a xanthone, several of which had antifungal activity. I. lacteus strain and its extracellular metabolites might be valuable tools for phytopathogenic fungi and oomycete biocontrol of agricultural relevance.     

Accuracy of Lightweight Satellite Telemetry: A Case Study in the Iberian Peninsula

Abstract: Here we provide the first assessment of the accuracy of lightweight satellite transmitters (<80 g) under actual operating conditions and the performance of the Argos system in southern Europe. To estimate transmitter accuracy we used transmitters equipped with a Global Positioning System (GPS) and compared the location estimates provided by Argos with the estimates provided by the GPS. Using the 68th percentile to define the accuracy of locations estimates, observed accuracy was 4 km for Location Class (LC) 1, 15 km for LC 0, 20 km for LC A, and 59 km for LC B, which is in line with estimates reported by other authors. Yet, the error of the remaining 32% of the data ranged between 4 km and 11 km, 15 km and 217 km, 20 km and 145 km, and 59 km and 493 km, respectively, suggesting that using the 68th percentile to estimate accuracies might give misleading confidence on the accuracy of location estimates. Using the 90th percentile is probably more appropriate. Less than 10% of the locations we obtained corresponded to the more accurate LCs (3, 2, and 1), with Argos failing to provide a position estimate in 45% of the attempts. The low number of high-quality location estimates is likely a consequence of the electromagnetic interference reported for our study area, rather than a defect of the Platform Transmitter Terminals (PTTs), which under good conditions of signal reception seem to be as reliable as heavier ones. The recent advent of lightweight GPS transmitters overrides most of these problems. Yet, whereas the smallest Argos-GPS PTTs weigh 30 g, which restricts their use to animals weighting > 1,000 g, conventional PTTs can be as small as 9.5 g, allowing their use with animals weighting 250-300 g.     

Elevated substitution rate estimates from ancient DNA: model violation and bias of Bayesian methods

The increasing ability to extract and sequence DNA from noncontemporaneous tissue offers biologists the opportunity to analyse ancient DNA (aDNA) together with modern DNA (mDNA) to address the taxonomy of extinct species, evolutionary origins, historical phylogeography and biogeography. Perhaps more exciting are recent developments in coalescence-based Bayesian inference that offer the potential to use temporal information from aDNA and mDNA for the estimation of substitution rates and divergence dates as an alternative to fossil and geological calibration. This comes at a time of growing interest in the possibility of time dependency for molecular rate estimates. In this study, we provide a critical assessment of Bayesian Markov chain Monte Carlo (MCMC) analysis for the estimation of substitution rate using simulated samples of aDNA and mDNA. We conclude that the current models and priors employed in Bayesian MCMC analysis of heterochronous mtDNA are susceptible to an upward bias in the estimation of substitution rates because of model misspecification when the data come from populations with less than simple demographic histories, including sudden short-lived population bottlenecks or pronounced population structure. However, when model misspecification is only mild, then the 95% highest posterior density intervals provide adequate frequentist coverage of the true rates.     

Intracellular Localization of LRV1 in Infected Leishmania Cells and Epitope Conservation of the Coat Protein

ABSTRACT. Polyclonal antibodies were raised against a recombinant fragment of the coat protein of LRV1-1 to determine the epitope conservation of the coat protein among LRV1 isolates, and the intracellular localization of LRV1 particles in promastigote cells of Leishmania braziliensis . Western blot analysis showed that specific epitopes of the coat protein are highly conserved among isolates from different geographic areas. Using indirect immunofluorescence assays LRV1 viral particles were observed as fluorescent granules, limited to the cytoplasm and with no apparent association to the host organelles or the cell membrane, characteristic of a persistent, non-infectious virus.     

Clarification of the taxonomic status and relationships of Pteridium caudatum (Dennstaedtiaceae) in Central and South America

Contemporary systematic treatments of the Central and South American bracken ferns in the genus Pteridium Gled. ex Scop. recognize morphotype caudatum as either a full species or a variety of P. aquilinum (L.) Kuhn. Geographically representative sporophytes of morphotype caudatum , including the type in the Linnaean Herbarium, are shown using spore size, guard-cell length and morphology of the cells of the false indusium to be tetraploid (based on 4 n  = 208). DNA fingerprinting of field-collected Venezuelan samples supports the generalization that morphotype caudatum is a fertile allotetraploid containing genomic elements otherwise distinctive of the southern hemisphere diploid P. arachnoideum (Kaulf.) Maxon, together with elements characteristic of northern hemisphere diploids including the North American P. aquilinum var. pubescens Underw. and P. aquilinum var. pseudocaudatum (Clute) A. Heller. Evidence of genetic isolation from taxa with overlapping distributions, as well as morphological, biochemical and ecological data, validate recognition of P. caudatum (L.) Maxon at species level. Heterogeneity observed within P. caudatum is consistent with multiple origins through independent hybridization events. Pteridium caudatum is strikingly analogous to the tropical Asian/Australasian allotetraploid P. semihastatum (N. Wallich ex J. G. Agardh) S. B. Andrews [= P. yarrabense (Domin) N. A. Wakef.].  © 2002 The Linnean Society of London . Botanical Journal of the Linnean Society , 2002, 140 , 237−248.