Revised correlation of Silurian Provincial Series of North America with global and regional chronostratigraphic units and δ13Ccarb chemostratigraphy

Cramer, B.D., Brett, C.E., Melchin, M.J., Männik, P., Kleffner, M.A., McLaughlin, P.I., Loydell, D.K., Munnecke, A., Jeppsson, L., Corradini, C., Brunton, F.R. & Saltzman, M.R. 2011: Revised correlation of Silurian Provincial Series of North America with global and regional chronostratigraphic units and δ¹³C_carb chemostratigraphy. Lethaia, Vol. 44, pp. 185–202. Recent revisions to the biostratigraphic and chronostratigraphic assignment of strata from the type area of the Niagaran Provincial Series (a regional chronostratigraphic unit) have demonstrated the need to revise the chronostratigraphic correlation of the Silurian System of North America. Recently, the working group to restudy the base of the Wenlock Series has developed an extremely high‐resolution global chronostratigraphy for the Telychian and Sheinwoodian stages by integrating graptolite and conodont biostratigraphy with carbonate carbon isotope (δ¹³C_carb) chemostratigraphy. This improved global chronostratigraphy has required such significant chronostratigraphic revisions to the North American succession that much of the Silurian System in North America is currently in a state of flux and needs further refinement. This report serves as an update of the progress on recalibrating the global chronostratigraphic correlation of North American Provincial Series and Stage boundaries in their type area. The revised North American classification is correlated with global series and stages as well as regional classifications used in the United Kingdom, the East Baltic, Australia, China, the Barrandian, and Altaj. Twenty‐four potential stage slices, based primarily on graptolite and conodont zones and correlated to the global series and stages, are illustrated alongside a new composite δ¹³C_carb curve for the Silurian. Conodont, graptolite, isotope, New York, Ontario, series, Silurian, stage.     

8-Chloroadenine: a novel product formed from hypochlorous acid-induced damage to calf thymus DNA

Hypochlorous acid (HOCl) is formed by the action of the enzyme myeloperoxidase on hydrogen peroxide and chloride ions. It has been shown to be highly bactericidal and cytotoxic by a variety of mechanisms, one of which, may be the modification of DNA. Previously we have demonstrated by GC-MS analysis that exposure of calf thymus DNA to HOCl causes extensive pyrimidine modification, including 5-chlorocytosine formation. Using GC-MS analysis, we now demonstrate the formation of an additional chlorinated base product, 8-Cl adenine. The addition of 50 μM HOCl was sufficient to produce a significant increase in this product. The reaction of HOCl with adenine in calf thymus DNA was shown to be rapid with the reaction complete after 1 min. pH-dependence studies suggest HOCl rather than its conjugate base (OCl-) to be responsible for 8-Cl adenine formation. Other commercially available chlorinated base products, 6-Cl guanine or 2-Cl adenine were not detected. Therefore, 8-Cl adenine might prove a useful biomarker for studying the role of reactive chlorine species (RCS) during inflammatory processes.     

Polymorphic microsatellite loci isolated from the great scallop,Pecten maximus (Bivalvia: Pectinidae)

We isolated and characterized nine polymorphic microsatellite loci from the great scallop (Pecten maximus) as part of an attempt to better understand the population–genetic structure of this species. Levels of genetic diversity were assessed in 32 scallops collected from the coastal waters of Port Erin Bay, Isle of Man. The number of alleles ranged from two to 29 and observed and expected heterozygosities varied between 0.031 to 0.906 and 0.062 to 0.973, respectively. Two loci showed significant (P < 0.05) heterozygote deficits, likely because of null (nonamplifying) alleles; one pair of loci was in linkage disequilibrium.     

Beyond splitting hares and rabbiting on about major histocompatibility complex complexity

The genes of the major histocompatibility complex (MHC) have become the target of choice for studies wishing to examine adaptively important genetic diversity in natural populations. Within Molecular Ecology alone, there have been 71 papers on aspects of MHC evolution over the past few years, with an increasing year on year trend. This focus on the MHC is partly driven by the hypothesized links between MHC gene dynamics and ecologically interesting and relevant traits, such as mate choice and host–parasite interactions. However, an ability to pin down the evolutionary causes and ecological consequences of MHC variation in natural populations has proven challenging and has been hampered by the very issue that is attractive about MHC genes – their high levels of diversity. Linking high levels of MHC diversity to ecological factors in inherently complex natural populations requires a level of experimental design and analytical rigour that is extremely difficult to achieve owing to a plethora of potentially confounding and interacting variables. In this issue of Molecular Ecology, Smith et al. (2010) elegantly overcome the challenge of detecting complex interactions in complex systems by using an intricate analytical approach to demonstrate a role for MHC in the reproductive ability of a natural population of the European hare Lepus europaeus ( Fig. 1 ). Also in this issue, Oppelt et al. (2010) demonstrate a role for MHC variation in determining levels of hepatic coccidian infection in the European rabbit Oryctolagus cuniculus ( Fig. 2 ).

Figure 1 Open in figure viewer PowerPoint The European hare (Lepus europaeus).     

Response of plants and the dominant microarthropod, Cryptopygus antarcticus, to warming and contrasting precipitation regimes in Antarctic tundra

We examined the influence of warming and supplemental precipitation on plant production and abundance of the dominant microarthropod, the springtail Cryptopygus antarcticus (Collembola), in tundra dominated by the vascular plants Colobanthus quitensis and Deschampsia antarctica along the Antarctic Peninsula. Tundra cores were placed in plots near Palmer Station where they were warmed with infrared heaters in combination with receiving supplemental precipitation. Diel canopy air and soil temperatures and air vapor pressure deficits in warmed plots were elevated 0.8 °C, 2.2 °C and 0.13 kPa, respectively. After two growing seasons, total aboveground plant production was greater under warming as a result of enhanced production by C. quitensis, which more than offset declines in moss biomass. Total aboveground plant production was also greater under supplemental precipitation primarily as a result of enhanced moss production. Total aboveground plant production was greatest under the combination of warming and supplemental precipitation, primarily as a result of enhanced C. quitensis production. C. antarcticus were more abundant in cores receiving supplemental precipitation and there was a strong treatment interaction; these springtails were most abundant in warmed cores receiving supplemental precipitation. Over 50% of the variability in the abundance of C. antarcticus could be explained by differences in aboveground plant biomass. However, plant production did not appear directly responsible for differences in C. antarcticus abundance; when we examined C. antarcticus abundance per unit of aboveground plant biomass, differences in its abundance among treatments were still apparent implying these differences were not the direct result of plant biomass. The responses of C. antarcticus were consistent with its known moisture and thermal preferences, suggesting that abiotic factors played a dominant role in controlling its abundance. Precipitation regime had large impacts on warming responses and these were species specific, illustrating the importance of future precipitation regimes in predicting system responses to warming.     

Impact of Spatial and Temporal Variation in Calf Survival on the Growth of Elk Populations

Abstract: The realized impact of a vital rate on population growth (λ) is determined by both the relative influence of the vital rate on λ (elasticity) and its magnitude of variability. We estimated mean survival and reproductive rates in elk (Cervus elaphus) and spatial and temporal variation in these rates from 37 sources located primarily across the Rocky Mountain region and northwestern United States. We removed sampling variance from estimates of process variance both within and across vital-rate data sets using the variance discounting method developed by White (2000). Deterministic elasticities calculated from a population matrix model parameterized with these mean vital rates ranked adult female survival (e_Scow = 0.869) much higher than calf survival (e_Scalf = 0.131). However, process variance in calf survival was >11 times greater than process variance in female survival across data sets and 10 times greater on average within studies. We conducted Life-Stage Simulation Analysis to incorporate both vital-rate elasticity patterns and empirical estimates of variability to identify those vital rates most influential in elk population dynamics. The overwhelming magnitude of variation in calf survival explained 75% of the variation in the population growth rates generated from 1,000 matrix replicates, compared to just 16% of the variation in λ explained by variation in female survival. Variation in calf survival greatly impacts elk population growth and calls into question the utility of classical elasticity analysis alone for guiding elk management. These results also suggest that the majority of interannual variability that wildlife managers document in late-winter and spring elk surveys is attributable to variation in calf survival over the previous year and less influenced by variation in the harvest of females during the preceding autumn. To meet elk population size objectives, managers should consider the inherent variation in calf survival, and its apparent sensitivity to management, in addition to female harvest.     

WUCHIAPINGIAN (LOPINGIAN, LATE PERMIAN) BRACHIOPODS FROM THE EPISKOPI FORMATION OF HYDRA ISLAND, GREECE

Abstract:  Twenty-three species of silicified brachiopods are described from four samples in the middle and upper parts of the Episkopi Formation from Hydra Island, Greece. These brachiopods are newly recorded from the region and together with previously described brachiopods from the same localities constitute the most diverse Lopingian (Late Permian) brachiopod fauna reported in southern Europe. The brachiopod fauna is Wuchiapingian as indicated by the associated conodonts. The fauna from Hydra exhibits strong palaeobiogeographical links with the faunas from South China. In addition, palaeobiogeographical affinities with the faunas of Thailand and the northern peri-Gondwanan region are also present, which implies a peri-Gondwanan origin for Hydra. Palaeoecologically, the brachiopod assemblage from sample EP in the middle part of the Episkopi Formation is dominated by pedically-attached and cementing genera and reflects moderate energy conditions above storm wave base and an abundance of hard substrates provided by sponges in the biohermal habitat. By contrast, the brachiopod assemblage in the other three samples from the upper part of the Episkopi Formation is dominated by spinose genera with a free-resting life habit, suggesting soft substrates in a quiet water environment below storm wave base on the outer part of the shelf. New taxa are Petinospiriferina gen. nov., Hustedia episkopiensis sp. nov., Waterhouseiella hydraensis sp. nov. and Xenosaria tenuis sp. nov.     

Patterns of seasonal and yearly mass variation in West African tropical savannah birds

Birds in the northern hemisphere usually increase mass reserves in response to seasonal low temperatures and shorter day length that increase foraging unpredictability and so starvation risk. In the lowland tropics, relatively low temperatures and short day lengths are absent and so the risk of starvation may be reduced, leading to much smaller seasonal effects on mass. Nevertheless, other factors such as high temperatures and water and food availability may vary greatly between tropical wet and dry seasons, leading to variable starvation risk and seasonal mass effects. Using data collected from 47 species of birds caught over a 10‐year period in a tropical savannah region in West Africa we tested for seasonal variation in mass in response to a predictable, strongly seasonal tropical climate. Many species (91%) showed seasonal variation in mass, and this was often in a clear annual pattern that was constant across the years. Many species (89%) varied their mass in response to seasonally predictable rainfall. Annual variation in mass was also important (45% of species). Relatively few species (13%) had a seasonal pattern of mass variation that varied between years. Feeding guild or migratory status was not found to affect seasonal or annual mass variation. Seasonal mass change was on average 8.1% across the 21 species with a very large sample size and was comparable with both northern and southern temperate species. Our study showed that biologically significant consistent seasonal mass variation is common in tropical savannah bird species, and this is most likely in response to changing resource availability brought about by seasonal rainfall and the interrupted foraging response due to the constraints of breeding.