Eleven polymorphic microsatellite loci in Lindera benzoin,Lauraceae

Microsatellite markers were developed for studies of the genetic diversity and population substructure of Lindera benzoin, Lauraceae (spicebush). Nuclear microsatellite sequences were obtained from DNA libraries that were enriched for (CA), (GA), (AAG) and (ATG) repeat motifs. From 69 microsatellite sequences, 20 primer sets were developed. Of these, 11 primer pairs resulted in amplified polymorphic loci. In 29 samples of eastern Pennsylvania spicebush plants, the number of microsatellite alleles ranged from two to 16 per locus with observed heterozygosity values ranging from 0.10 to 0.82.     

Identification and characterization of simple sequence repeat markers from Brassica napus expressed sequences

The availability of expressed sequence data derived from gene discovery programs enables mining for simple sequence repeats (SSR), providing useful genetic markers for crop improvement. These markers are inexpensive, require minimal labour to produce and can frequently be associated with functionally annotated genes. This study presents the development and characterization of 24 expressed sequence tags (EST)‐SSR markers from Brassica napus and their cross‐amplification across Brassica species. The markers show reliable amplification, genome specificity and considerable polymorphism, demonstrating the utility of EST‐SSRs for genetic analysis of wild Brassica populations and commercial Brassica germplasm.     

White-Tailed Deer Foraging Habitat in Intensively Established Loblolly Pine Plantations

ABSTRACT Stand establishment techniques involving multiple herbicide applications are commonly used on industrial pine (Pinus spp.) plantations, raising concern over potential effects on white-tailed deer (Odocoileus virginianus) forage production. We tested effects of stand establishment intensity on deer forage in 1–5-year-old loblolly pine (Pinus taeda) plantations (n = 4) in the East Gulf Coastal Plain of Mississippi using forage biomass and 4 measures of nutritional carrying capacity that reflected crude protein or digestible energy requirements for body maintenance and lactation. We also assessed whether forage biomass combined with a deer use rating effectively indexed nutritional carrying capacity. Treatments were combinations of mechanical site preparation, chemical site preparation (CSP), and herbaceous weed control (HWC). Total forage biomass and forage biomass of grasses and forbs were reduced by broadcast HWC. Forage biomass of vines was reduced both by CSP and by multiple broadcast HWC applications. Maintenance-level carrying capacity estimates were reduced by broadcast HWC; lactation-level estimates were higher in moderate-intensity treatments. We believe the inherently low fertility of this region makes high-quality forage production a more important management priority than increasing forage quantity. Chemical or chemical and mechanical site preparation combined with banded HWC provided the best option for providing both forage quality and quantity in open-canopied, intensively managed pine plantations. Biomass-based indices may be suitable for indexing protein-based maintenance-level carrying capacity in this region, but our results indicated they were not useful for indexing other carrying capacity estimates.     

The Ecology of Antigenic Variation1,2

A detailed molecular analysis using recombinant DNA technologies is extremely important to our understanding of the phenomena of antigenic variation in the African trypanosomes; however, by itself, it may not completely explain antigenic variation as it occurs in vivo. Several laboratories have demonstrated the ability of one variant population to replace another in vivo as well as the presence of heterogeneous populations of trypanosomes within an individual animal. These two phenomena do not permit us to explain antigen variation solely on the basis of the molecular regulation of variant antigen expression. In addition to studies in molecular biology, it will be necessary to define clearly the differences in growth rates of variant populations and the role of competition between these variants in a single anatomical site. It will also be necessary to determine the influence of various physiological environments on growth rates and the competition between the different variants of a single repertoire. It is concluded that the phenomenon of antigenic variation is a complex problem in ecology and population dynamics as well as molecular regulation. This paper is designated to examine a variety of the ecological parameters presumably involved in antigenic variation.     

Effect of Low Relative Humidity on {delta}13C Value in Two C3 Grasses and in Panicum milioides, a C3-C4 Intermediate Species

When grown under conditions of low relative humidity, the C₃–C₄intermediate Panicum milioides, as well as the C₃ grasses Triticumaestivum and Poa pratense, exhibited ¹³C values which were upto 2–7%o less negative than the ¹³C values of the correspondingplants grown at high relative humidity. At both humidity levels,there was no evidence of a substantial contribution of phosphoenolpyruvatecarboxylase to carbon gain in Panicum milioides     

Relations between water content, potential and permeability in stems of conifers

Abstract. The influence of sapwood water content on the conductivity of sapwood to water was measured on stem sections of Pinus contorta. A reduction in relative water content from 100 to 90% caused permeability to fall to about 10% of the saturated value.
Pressure–volume curves of branchwood and stem sapwood of Pinus contorta and Picea sitchensis have been analysed to definè the tissue capacitance and the time constant and resistance for water movement between stored water and the functional xylem as functions of tissue water potential. Three phases in water loss were discernible. In the initial phase at high water potentials (> –0.5 MPa), the capacitance was large, the time constant long and the resistance to flow large in comparison with intermediate water potentials (−0.5 to −1.5 MPa). At still lower water potentials (−1.5 to −3.0 MPa), the time constant and resistance declined still further but the capacitance had a tendency to increase again, especially in the stemwood of Sitka spruce. Typical values in the second phase were for the time constant 5 s, for the resistance 4 × 10⁻¹³ N s m⁻⁵ and for the capacitance (change in relative water content per unit change in potential) 1×10⁻¹¹ m³ Pa⁻¹. These parameters define the availability of stored water and are being used in a dynamic model of water transport in trees.     

Condensed Tannins' Effect on White-Tailed Deer Forage Digestibility in Mississippi

Abstract: Condensed tannins (CT) can reduce digestibility of forages for white-tailed deer (Odocoileus virginianus), potentially confounding estimates of diet quality and nutritional carrying capacity. We collected 143 spring and 142 summer samples of 8 important deer forage species from 22 properties in Mississippi, USA, and tested for CT content using a modified butanol-HCl assay. Three species (partridge pea [Chamaecrista fasciculata], southern dewberry [Rubus trivialis], and roundleaf greenbrier [Smilax rotundifolia]) contained CT, ranging from 0.11% to 6.46% dry weight. Summer CT concentration was greater than in spring for 2 species. We ranked soil samples from least to most fertile using 8 chemical characteristics and found a positive correlation between fertility and CT concentration for 1 species and no correlation for 2 species. We tested effects of CT concentration on in vitro dry matter disappearance (IVDMD) and in vitro protein digestibility using samples of partridge pea and roundleaf greenbrier and rumen fluid from 3 free-ranging deer. Average IVDMD was reduced 1.9% for each 1% increase in CT concentration. In vitro protein digestibility was reduced 2.5% for each 1% increase in CT concentration. Assuming that our methods reflect the effects of CT on in vivo digestibility, maximum loss of available crude protein (CP) in our samples was 3.0 g/100 g dry-weight forage, and only 13 of the 112 CT-containing forage samples (12%) would have decreased available CP by >1 g/100 g dry-weight forage. Deer consuming equal portions of sampled forages would lose <1% of dietary CP to CT. Comparisons of foraging area quality using crude protein estimates should be unaffected by CT under reasonable restrictions of similar habitat types, soil fertility, and time. Given the ability of deer to forage selectively and the abundance of alternative forages in Mississippi, the potential for CT to substantially affect spring or summer diet quality of deer appears minimal.     

Detection of methanogens and methanotrophs in natural environments

The role of methane as a greenhouse gas and the contribution of bacteria to the production (methanogenesis) and destruction (methane oxidation) of methane is described. Using experimental approaches based on DNA sequences identifying either methanogen-specific or methanotroph-specific gene sequences methods were developed to broaden the detection and identification of methane metabolizing bacteria in natural environments. These methods were focused on blanket bog peat but are suitable for other environments. In addition to group specific 16S rRNA DNA sequences, specific functional gene probes based on methane coenzyme reductase sequences for methanogens and methane monooxygenase sequences for methanotrophs, were developed. These sequences were used in PCR-based protocols to detect and amplify specific gene sequences from the total DNA isolated from transverse sections of blanket bog peat. This permitted the analysis of the vertical distribution of methanogen and methanotroph populations, discrimination between different sub-sets of these populations, and the identification of novel organisms not previously detected by culture-based methods.