Phenotypic correlates of Clock gene variation in a wild blue tit population: evidence for a role in seasonal timing of reproduction

The timing of reproduction in birds varies considerably within populations and is often under strong natural selection. Individual timing within years is dependent on a range of environmental factors in addition to having an additive genetic basis. In vertebrates, an increasing amount is known about the molecular basis for variation in biological timing. The Clock gene includes a variable poly-glutamine (poly-Q) repeat influencing behaviour and physiology. Recent work in birds, fish and insects has demonstrated associations between Clock genotype and latitude across populations, which match latitudinal variation in breeding time. In this study, we investigated the phenotypic correlates of variation in Clock genotype within a single blue tit Cyanistes caeruleus population over two successive breeding seasons. In females, but not in males, we observed a general trend for birds with fewer poly-Q repeats to breed earlier in the season. Incubation duration was shorter in both females and males with fewer repeats at the polymorphic Clock locus. Poly-Q Clock allele-frequency was homogenously distributed within the study population and did not exhibit any consistent environment-related variation. We further tested for effects of Clock genotype on reproductive success and survival, and found that females with fewer poly-Q repeats produced a higher number of fledged offspring. Our results therefore suggest that (i) selection in females, but not in males, for fewer poly-Q repeats may be operating, (ii) the across–population associations in timing of breeding involving this locus could be linked to variation within populations, and (iii) the Clock gene might be involved in local adaptation to seasonal environments.     

Microsatellite loci in the Propertius duskywing,Erynnis propertius (Lepidoptera: Hesperiidae), and related species

Fifteen polymorphic dinucleotide microsatellite loci were characterized for Erynnis propertius using an enrichment protocol. The number of alleles varied from nine to 28 for a sample of 24 individuals. Observed heterozygosities ranged from 0.25 to 0.96. Homozygote excess was detected for 10 loci. Twelve markers successfully amplified in related Erynnis species and eight loci were polymorphic in at least one other species.     

Spatial association of Aspidosperma quebracho‐blanco juveniles with shrubs and conspecific adults in the Arid Chaco,Argentina

Abstract The survival of Aspidosperma quebracho‐blanco juveniles in the Arid Chaco is facilitated under the canopy of nurse plants. The possible effects of nurse plants were studied at intra‐ and interspecific levels by analysing the spatial distribution of juveniles and adults of A. quebracho‐blanco, of the main shrubs Larrea divaricata and Mimozyganthus carinatus, and of the group of deciduous and evergreen shrub species, and their pair associations. Data were analysed using the SADIE (Spatial Analysis by Distance Indices) software. A. quebracho‐blanco seedling abundance followed the distribution pattern of the main shade‐providing species: an aggregated spatial distribution pattern in most of the categories studied. The seedling bank of A. quebracho‐blanco also showed an aggregated pattern and was spatially associated with shrubs and adults of its own species. The intensity of the association depended on the functional types: deciduous Fabaceae, deciduous non‐Fabaceae, evergreen and conspecific adults, each of which provides a different canopy structure and therefore different amounts of shade. The spatial association was significant with the evergreen group, and less significant with the deciduous Fabaceae group. There was no positive association with deciduous non‐Fabaceae, or with gaps (open sky). The differences generated by canopy cover may influence the nurse effect, as observed in the intensity of association of A. quebracho‐blanco with shrubs and conspecific adults.     

Effective population size and evolutionary dynamics in outbred laboratory populations of Drosophila

Census population size, sex-ratio and female reproductive success were monitored in 10 laboratory populations of Drosophila melanogaster selected for different ages of reproduction. With this demographic information, we estimated eigenvalue, variance and probability of allele loss effective population sizes. We conclude that estimates of effective size based on gene-frequency change at a few loci are biased downwards. We analysed the relative roles of selection and genetic drift in maintaining genetic variation in laboratory populations of Drosophila. We suggest that rare, favourable genetic variants in our laboratory populations have a high chance of being lost if their fitness effect is weak, e.g. 1% or less. However, if the fitness effect of this variation is 10% or greater, these rare variants are likely to increase to high frequency. The demographic information developed in this study suggests that some of our laboratory populations harbour more genetic variation than expected. One explanation for this finding is that part of the genetic variation in these outbred laboratory Drosophila populations may be maintained by some form of balancing selection. We suggest that, unlike bacteria, medium-term adaptation of laboratory populations of fruit flies is not primarily driven by new mutations, but rather by changes in the frequency of preexisting alleles.     

Contrasting engineering effects of leaf‐rolling caterpillars on a tropical mite community

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Using combined measurements of gas exchange and chlorophyll fluorescence to estimate parameters of a biochemical C3 photosynthesis model: a critical appraisal and a new integrated approach applied to leaves in a wheat (Triticum aestivum) canopy

We appraised the literature and described an approach to estimate the parameters of the Farquhar, von Caemmerer and Berry model using measured CO₂ assimilation rate (A) and photosystem II (PSII) electron transport efficiency (Φ₂). The approach uses curve fitting to data of A and Φ₂ at various levels of incident irradiance (I_inc), intercellular CO₂ (C_i) and O₂. Estimated parameters include day respiration (R_d), conversion efficiency of I_inc into linear electron transport of PSII under limiting light [κ_2(LL)], electron transport capacity (J_max), curvature factor (θ) for the non‐rectangular hyperbolic response of electron flux to I_inc, ribulose 1·5‐bisphosphate carboxylase/oxygenase (Rubisco) CO₂/O₂ specificity (S_c/o), Rubisco carboxylation capacity (V_cmax), rate of triose phosphate utilization (T_p) and mesophyll conductance (g_m). The method is used to analyse combined gas exchange and chlorophyll fluorescence measurements on leaves of various ages and positions in wheat plants grown at two nitrogen levels. Estimated S_c/o (25 °C) was 3.13 mbar µbar^?1; R_d was lower than respiration in the dark; J_max was lower and θ was higher at 2% than at 21% O₂; κ_2(LL), V_cmax, J_max and T_p correlated to leaf nitrogen content; and g_m decreased with increasing C_i and with decreasing I_inc. Based on the parameter estimates, we surmised that there was some alternative electron transport.     

Fast evolutionary genetic differentiation during experimental colonizations

Founder effects during colonization of a novel environment are expected to change the genetic composition of populations, leading to differentiation between the colonizer population and its source population. Another expected outcome is differentiation among populations derived from repeated independent colonizations starting from the same source. We have previously detected significant founder effects affecting rate of laboratory adaptation among Drosophila subobscura laboratory populations derived from the wild. We also showed that during the first generations in the laboratory, considerable genetic differentiation occurs between foundations. The present study deepens that analysis, taking into account the natural sampling hierarchy of six foundations, derived from different locations, different years and from two samples in one of the years. We show that striking stochastic effects occur in the first two generations of laboratory culture, effects that produce immediate differentiation between foundations, independent of the source of origin and despite similarity among all founders. This divergence is probably due to powerful genetic sampling effects during the first few generations of culture in the novel laboratory environment, as a result of a significant drop in N _e. Changes in demography as well as high variance in reproductive success in the novel environment may contribute to the low values of N _e. This study shows that estimates of genetic differentiation between natural populations may be accurate when based on the initial samples collected in the wild, though considerable genetic differentiation may occur in the very first generations of evolution in a new, confined environment. Rapid and significant evolutionary changes can thus occur during the early generations of a founding event, both in the wild and under domestication, effects of interest for both scientific and conservation purposes.