A NON-INVASIVE METHOD FOR THE TIGHT ANCHORING OF CELLS FOR SCANNING FORCE MICROSCOPY

Use of scanning force microscopy (SFM) for high resolution imaging of cell surfaces requires the cells to be tightly attached to substrates. Imaging of loosely adhered RBL-2H3 cells enabled determination of the cell size and investigation of larger structures and pseudopodia but failed in resolving more detail. Immobilization under non-invasive conditions via flexible crosslinkers containing a hydrophobic anchoring group enhanced resolution enormously. The cells were tightly attached to the substrates and were not removed by shear forces up to 80nN as determined in a flow through apparatus. Morphological structures and dynamic processes on cell surfaces were observed as well as structural changes after cell stimulation upon ionomycin treatment. Molecular or atomic resolution, however, was not attainable which is attributed to the displacement of the flexible cell surface due to shear forces arising from the scanning tip during contact mode.     

Differentiation of metallicolous and non‐metallicolous Salix caprea populations based on phenotypic characteristics and nuclear microsatellite (SSR) markers

The Salicaceae family comprises a large number of high‐biomass species with remarkable genetic variability and adaptation to ecological niches. Salix caprea survives in heavy metal contaminated areas, translocates and accumulates Zn/Cd in leaves. To reveal potential selective effects of long‐term heavy metal contaminations on the genetic structure and Zn/Cd accumulation capacity, 170 S. caprea isolates of four metal‐contaminated and three non‐contaminated middle European sites were analysed with microsatellite markers using Wright's F statistics. The differentiation of populations North of the Alps are more pronounced compared to the Southern ones. By grouping the isolates based on their contamination status, a weak but significant differentiation was calculated between Northern metallicolous and non‐metallicolous populations. To quantify if the contamination and genetic status of the populations correlate with Zn/Cd tolerance and the accumulation capacity, the S. caprea isolates were exposed to elevated Cd/Zn concentrations in perlite‐based cultures. Consistent with the genetic data nested anova analyses for the physiological traits find a significant difference in the Cd accumulation capacity between the Northern and Southern populations. Our data suggest that natural populations are a profitable source to uncover genetic mechanisms of heavy metal accumulation and biomass production, traits that are essential for improving phytoextraction strategies.     

Computer-aided Numerical Identification of Gram negative Fermentative Rods on a Desk-top Computer

One hundred and sixty-three strains of Gram negative fermentative rods isolated from humans and 60 isolated from diseased snails were identified by a conventional method and by numerical identification on a desk-top computer. The two methods gave the same identities with 133 'human strains' and 33 'snail strains'. The possible sources of the differences in identifications are discussed. The study showed that numerical identification done on a desk-top computer can be a useful method for routine medical microbiological laboratories.     

The Quilon Limestone,Kerala Basin,India: an archive for Miocene Indo‐Pacific seagrass beds

Reuter, M., Piller, W.E., Harzhauser, M., Kroh, A., Rögl, F. & ?ori?, S. 2010: The Quilon Limestone, Kerala Basin, India: an archive for Miocene Indo‐Pacific seagrass beds. Lethaia, Vol. 44, pp. 76–86. The facies of the fossiliferous Quilon Limestone in SW India is described for the first time in detail at the Padappakkara‐type locality. Facies (fossiliferous, micrite‐rich, bioturbated sediment with intercalated sand pockets) and faunal composition (epiphytic foraminifers, seagrass feeding Smaragdia gastropods, bioimmuration of celleporiform bryozoan colonies) indicate a seagrass environment. The large discoidal archaiasin foraminifer Pseudotaberina malabarica, in particular, is considered as a proxy for seagrass communities. Recent seagrasses have their centre of generic richness in the Indo‐Pacific where they cover wide areas in the tidal and shallow sub‐tidal zones. However, their geological record is only fragmentary and their palaeobiogeographic distribution has a big stratigraphical gap in the Miocene Western Indo‐Pacific region. The described nannoplankton flora and planktonic foraminifers from the Quilon Formation demonstrate that the deposition of the studied seagrass bed occurred in nannoplankton biozone NN3. This timing suggests formation during the closure of the Tethyan Seaway. The Quilon Limestone is thus an early Western Indo‐Pacific seagrass bed and an important step in reconstructing the history of seagrass communities. □Quilon Formation, Pseudotaberina malabarica, seagrass facies, Burdigalian, Indo‐Pacific.     

Soil water repellency and its implications for organic matter decomposition – is there a link to extreme climatic events?

Earth system models associate the ongoing global warming with increasing frequency and intensity of extreme events such as droughts and heat waves. The carbon balance of soils may be more sensitive to the impact of such extremes than to homogeneously distributed changes in soil temperature (T_s) or soil water content (θ_s). One parameter influenced by more pronounced drying/rewetting cycles or increases in T_s is the wettability of soils. Results from laboratory and field studies showed that low θ_s, particularly in combination with high T_s can increase soil water repellency (SWR). Recent studies have provided evidence that the stability of soil organic matter (SOM) against microbial decomposition is substantially enhanced in water repellent soils. This review hypothesizes that SWR is an important SOM stabilization mechanism that could become more important because of the increase in extreme events. We discuss wettability‐induced changes in soil moisture distribution and in soil aggregate turnover as the main mechanisms explaining the reduced mineralization of SOM with increasing SWR. The creation of preferential flow paths and subsequent uneven penetration of rainwater may cause a long‐term reduction of soil water availability, affecting both microorganisms and plants. We conclude that climate change‐induced SWR may intensify the effects of climatic drought and thus affects ecosystem processes such as SOM decomposition and plant productivity, as well as changes in vegetation and microbial community structure. Future research on biosphere–climate interactions should consider the effects of increasing SWR on soil moisture and subsequently on both microbial activity and plant productivity, which ultimately determine the overall carbon balance.     

Large geographical differences in the sensitivity of ice‐covered lakes and rivers in the Northern Hemisphere to temperature changes

Based on a unique dataset of more than 50 000 observations of ice phenology from 1213 lakes and 236 rivers in 12 different countries, we show that interannual variations in the timing of ice‐on and ice‐off on lakes and rivers are not equally pronounced over the entire Northern Hemisphere, but increase strongly towards geographical regions that experience only short periods during which the air temperature falls below 0 °C. We explain our observations by interannual fluctuation patterns of air temperature and suggest that lake and river ecosystems in such geographical regions are particularly vulnerable to global warming, as high interannual variability is known to have important ramifications for ecosystem structure and functioning. We estimate that the standard deviation of the duration of ice cover, viewed as a measure of interannual variability, exceeds 25 days for lakes and rivers located on 7% of the land area of the Northern Hemisphere. Such high variability might be an early warning signal for a critical transition from strictly dimictic, ice‐covered systems to monomictic, open‐water systems. Using the Global Lake and Wetland Database, we suggest that 3.7% of the world's lakes larger than 0.1 km² are at high risk of becoming open‐water systems in the near future, which will have immediate consequences for global biogeochemical cycles.     

Habitats of colonial rugose corals: the Mississippian of western Europe as example for a general classification

Aretz, M. 2010: Habitats of colonial rugose corals: the Mississippian of western Europe as example for a general classification. Lethaia, DOI: 10.1111/j.1502‐3931.2010.00218.x. Colonial rugose corals are a major constituent of shallow‐water marine benthic communities in Mississippian times. The study of western European rugose coral habitats from the base of the Tournaisian stage to the Serpukhovian stage allows the recognition of four basic habitat types, which can be divided into a total of 11 subtypes. The classification is mainly based on field data, and thus rapidly applicable. Level‐bottom communities in which large colony distances are characteristic (type A) represent the most basic community type; polyspecific (subtype A1) and monospecific (subtype A2) subtypes occur. Reduced colony distances result in the formation of coral meadows (type B), which either show homogenous coral distribution (subtype B1) or the development of patches (subtype B2). Coral biostromes (type C) represent a spectrum between hydrodynamically controlled biostromes (nothing in place, subtype C1) and biologically constructed and controlled biostromes (subtype C2). The bulk of the biostromes represent mixtures of those two subtypes (subtype C3). Colonial rugose corals are widely encountered in Mississippian bioherms where they are dwellers (subtype D1), form capping beds (subtype D2), support framework building along with other organisms (subtype D3) and form coral framework (subtype D4). The latter is probably the most uncommon of all subtypes in Mississippian times. The classification is widely applicable to other groups. □Classification, habitats, Mississippian, palaeoecology, palaeoenvironment, rugose corals.     

Changes in stoichiometric constraints on epilithon and benthic macroinvertebrates in response to slight nutrient enrichment of mountain rivers

1. To assess changes in stoichiometric constraints on stream benthos, we measured elemental composition of epilithon and benthic macroinvertebrates in intrinsically P‐limited mountain rivers, upstream and downstream of low‐level anthropogenic nutrient enrichment by effluents of municipal wastewater treatment plants. 2. While there was a broad range in the elemental composition of epilithon (C : P ratios of 200–16 500, C : N ratios of 8–280, N : P ratios of 8–535) and heptageniid mayfly scrapers (C : P ratios of 125–300, C : N ratios of 5.1–7.2, N : P ratios of 20–60), the average C : P ratio of epilithon was 10‐fold lower and the average C : N ratio twofold lower at more nutrient‐rich downstream sites. Nutrient ratios in benthic macroinvertebrates were lower than in epilithon and varied little between relatively nutrient‐poor and nutrient‐rich sites. 3. We modified the existing definition of producer‐consumer elemental imbalance to allow for variation in consumer nutrient content. We defined this ‘non‐homeostatic’ imbalance as the perpendicular distance between the producer and consumer C : P, C : N, or N : P ratios, and the 1 : 1 line. 4. At P‐limited sites, the estimated mayfly N : P recycling ratio was higher than the N : P ratio in epilithon, suggesting nutrient recycling by consumers could accentuate P‐limitation of epilithon. 5. Measuring the degree of producer–consumer nutrient imbalance may be important in predicting the magnitude of effects from nutrient enrichment and can help elucidate the causes and consequences of ecological patterns and processes in rivers.