Scale and uncertainty in modeled soil organic carbon stock changes for US croplands using a process‐based model

Process‐based model analyses are often used to estimate changes in soil organic carbon (SOC), particularly at regional to continental scales. However, uncertainties are rarely evaluated, and so it is difficult to determine how much confidence can be placed in the results. Our objective was to quantify uncertainties across multiple scales in a process‐based model analysis, and provide 95% confidence intervals for the estimates. Specifically, we used the Century ecosystem model to estimate changes in SOC stocks for US croplands during the 1990s, addressing uncertainties in model inputs, structure and scaling of results from point locations to regions and the entire country. Overall, SOC stocks increased in US croplands by 14.6 Tg C yr^?1 from 1990 to 1995 and 17.5 Tg C yr^?1 during 1995 to 2000, and uncertainties were ±22% and ±16% for the two time periods, respectively. Uncertainties were inversely related to spatial scale, with median uncertainties at the regional scale estimated at ±118% and ±114% during the early and latter part of 1990s, and even higher at the site scale with estimates at ±739% and ±674% for the time periods, respectively. This relationship appeared to be driven by the amount of the SOC stock change; changes in stocks that exceeded 200 Gg C yr^?1 represented a threshold where uncertainties were always lower than ±100%. Consequently, the amount of uncertainty in estimates derived from process‐based models will partly depend on the level of SOC accumulation or loss. In general, the majority of uncertainty was associated with model structure in this application, and so attaining higher levels of precision in the estimates will largely depend on improving the model algorithms and parameterization, as well as increasing the number of measurement sites used to evaluate the structural uncertainty.     

Assessment of soil calcium status in red spruce forests in the northeastern United States

Long-term changes in concentrations of available Ca in soils of redspruce forests have been documented, but remaining questions aboutthe magnitude and regional extent of these changes have precluded anassessment of the current and future status of soil Ca. To addressthis problem, soil samples were collected in 1992—93from 12 sites in New York, Vermont, New Hampshire, and Maine toprovide additional data necessary to synthesize all availableresearch results on soil Ca in red spruce forests. Sites werechosen to encompass the range of environmental conditionsexperienced by red spruce. Concentrations of exchangeableCa ranged from 2.13 to 21.6 cmol_ckg^–1 in the Oa horizon, and from 0.11 to 0.68cmol_c kg^–1 in the upper 10 cm of theB horizon. These measurements expanded the range of exchangeable Ca reported in the literature for both horizons in northeastern redspruce forests. Exchangeable Ca was the largest Ca fraction in theforest floor at most sites (92% ofacid-extractableCa), but mineral Ca was the largest fraction at the three sites that also had the highest mineral-matter concentrations. Theprimary factor causing variability in Ca concentrations among siteswas the mineralogy of parent material, but exchangeable concentrationsin the B horizon of all sites were probably reduced by acidicdeposition. Because the majority of Ca in the forest floor isin a readily leachable form, and Ca inputs to the forest floor from the mineral soil and atmospheric deposition have beendecreasing in recent decades, the previously documented decreasesin Ca concentrations in the forest floor over previous decades mayextend into the future.     

A NEW AZHDARCHOID PTEROSAUR FROM THE CRATO FORMATION (LOWER CRETACEOUS,APTIAN?) OF BRAZIL

Abstract: A partial pterosaur skull from the Nova Olinda Member of the Crato Formation (Lower Cretaceous, Aptian?) represents a new edentulous pterodactyloid, Lacusovagus magnificens gen. et sp. nov. The absence of teeth and a large nasoantorbital fenestra suggest assignment to Azhdarchoidea, and the combination of a particularly short, crestless and shallow rostrum and laterally flared jaw margins distinguish it from other azhdarchoid taxa. The position of the new form within Azhdarchoidea is problematic: Lacusovagus is distinguished from Tapejaridae in its straight, as opposed to ventrally displaced, jaw tip and absence of a premaxillary crest; from thalassodromids by the absence of a premaxillary crest; and from Azhdarchidae by the short length of the rostrum and shallow posterodorsal extension of the premaxilla. Lacusovagus shares a shallow, crestless rostrum and a slender posterodorsal premaxillary extension with Jiufotang Formation azhdarchoids such as Chaoyangopterus and Jidapterus. The position of these genera within Azhdarchoidea is controversial, but the suite of plesiomorphic and derived azhdarchoid characters in each suggests a placement between Tapejaridae and Neoazhdarchia. Further research is required, however, to determine the relationships of these genera both to each other and to other azhdarchoids. The new taxon elevates the faunal similarity found between the roughly contemporaneous Jiufotang and Crato formations and continues the pattern of Crato Formation azhdarchoids being much larger than those from the Jehol Group. It also has jaws at least 67 and 55 per cent longer, respectively, than those of the largest azhdarchoids and ornithocheirids from the Crato pterosaur assemblage, making Lacusovagus the largest pterosaur known from this unit.     

Correlates of extinction risk of birds from two Indonesian islands

Size of distributional range, position in the range, body size and diet are some of the ecological traits that may correlate with local abundance. Evolutionary phenomena such as taxon cycles, acting over much greater time periods, may also influence abundance and promote species extinction. This paper assesses which of a wide range of ecological and historic traits best predict the variation in abundance of tropical forest birds on Sumba and Buru islands in Wallacea (Indonesia). In addition we seek to determine which traits predict species' ability to adapt to secondary or logged forest. The most important correlates of both abundance and ability to transfer were those related to the evolutionary history of the species within the Wallacean Archipelago and not the traits that were more directly related to species ecology. These relationships are maintained when allowance is made for phylogenetic relationships. Our interpretation of the results is that recent colonists to an island are initially rare in the indigenous forest habitat but concomitant with an adaptation to local conditions they gradually become more abundant and taxonomically distinct from other populations of the same species. These results apparently contradict the taxon cycle hypothesis but this may be a result of our focus on indigenous forest habitats rather than on a wider range dominated by anthropogenic ones.     

Aerial Surveys for Estimating Wild Turkey Abundance in the Texas Rolling Plains

Abstract: Aerial surveys have been used to estimate abundance of several wild bird species including wild turkeys (Meleagris gallopavo). We used inflatable turkey decoys at 3 study sites in the Texas Rolling Plains to simulate Rio Grande wild turkey (M. g. intermedia) flocks. We evaluated detectability of flocks and errors in counting flock size during fixed-wing (Cessna 172) aerial surveys using logistic and linear regression models. Flock detectability was primarily influenced by flock size and vegetative cover, and errors in counting flock size were primarily influenced by size of flocks. We conducted computer simulations to evaluate the accuracy and precision of fixed-wing aerial surveys and examined power to detect trends in population change. Our simulations suggested abundance estimates from fixed-wing aerial surveys may be underestimated by 10-15% (2.0-4.8% CV). Power analyses suggested that fixed-wing aerial surveys can provide sufficient power (>0.80) to detect a population change of 10-25% over a 4-5-year period. We concluded fixed-wing aerial surveys are feasible on ecoregion scales.     

Estimating species richness and catch per unit effort from boat electro‐fishing in a lowland river in temperate Australia

Abstract Biodiversity estimates are typically a function of sampling effort and in this regard it is important to develop an understanding of taxon‐specific sampling requirements. Northern hemisphere studies have shown that estimates of riverine fish diversity are related to sampling effort, but such studies are lacking in the southern hemisphere. We used a dataset obtained from boat electro‐fishing the fish community along an essentially continuous 13‐km reach of the Murrumbidgee River, Australia, to investigate sampling effort effects on fish diversity estimates. This represents the first attempt to investigate relationships between sampling effort and the detection of fish species in a large lowland river in Australia. Seven species were recorded. Species‐specific patterns in catch per unit effort were evident and are discussed in terms of solitary and gregarious species, recreational fishing and the monitoring of rare and threatened species. There was a requirement to sample substantial lengths of river to describe total species richness of the fish community in this river reach. To this end, randomly allocated sampling effort and use of species richness estimators produced accurate estimates of species richness without the requirement for excessive levels of effort. Twenty operations were required to estimate species richness at this site, highlighting the need for comparable studies of river fish communities in lowland rivers elsewhere in Australia and the southern hemisphere.     

Ultrastructure of Ditrichomonas honigbergii N. G., N. Sp. (Parabasalia) and Its Relationship to Amitochondrial Protists

ABSTRACT. Ditrichomonas honigbergii n. g., n. sp. is a small trichomonad flagellate that has three emergent flagella arising from four basal bodies, a parabasal apparatus (single dictyosome with associated striated flagellar rootlets), a microtubular axostyle, a short undulating membrane, and hydrogenosomes. Cultures of D. honigbergii were isolated from the sediments of a freshwater lake and there is no known metazoan host. Cells form walled cysts with internalized flagella and go through all phases of the life cycle (excystment, binary division, encystment) without any perturbations to the culture medium. Ditrichornonas honigbergii is capable of ingesting and digesting bacteria by phagocytosis. These facts suggest that D. honigbergii may be a free-living inhabitant of oxygen-reduced environments. The structure of D. honigbergii is similar to that of retortamonads and the relationship of trichomonads to other amitochondrial protists is discussed.     

Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data

Next‐generation technologies generate an overwhelming amount of gene sequence data. Efficient annotation tools are required to make these data amenable to functional genomics analyses. The Mercator pipeline automatically assigns functional terms to protein or nucleotide sequences. It uses the MapMan ‘BIN’ ontology, which is tailored for functional annotation of plant ‘omics’ data. The classification procedure performs parallel sequence searches against reference databases, compiles the results and computes the most likely MapMan BINs for each query. In the current version, the pipeline relies on manually curated reference classifications originating from the three reference organisms (Arabidopsis, Chlamydomonas, rice), various other plant species that have a reviewed SwissProt annotation, and more than 2000 protein domain and family profiles at InterPro, CDD and KOG. Functional annotations predicted by Mercator achieve accuracies above 90% when benchmarked against manual annotation. In addition to mapping files for direct use in the visualization software MapMan, Mercator provides graphical overview charts, detailed annotation information in a convenient web browser interface and a MapMan‐to‐GO translation table to export results as GO terms. Mercator is available free of charge via http://mapman.gabipd.org/web/guest/app/Mercator .