Phylogeography of lions (Panthera leo ssp.) reveals three distinct taxa and a late Pleistocene reduction in genetic diversity

Lions were the most widespread carnivores in the late Pleistocene, ranging from southern Africa to the southern USA, but little is known about the evolutionary relationships among these Pleistocene populations or the dynamics that led to their extinction. Using ancient DNA techniques, we obtained mitochondrial sequences from 52 individuals sampled across the present and former range of lions. Phylogenetic analysis revealed three distinct clusters: (i) modern lions, Panthera leo ; (ii) extinct Pleistocene cave lions, which formed a homogeneous population extending from Europe across Beringia (Siberia, Alaska and western Canada); and (iii) extinct American lions, which formed a separate population south of the Pleistocene ice sheets. The American lion appears to have become genetically isolated around 340 000 years ago, despite the apparent lack of significant barriers to gene flow with Beringian populations through much of the late Pleistocene. We found potential evidence of a severe population bottleneck in the cave lion during the previous interstadial, sometime after 48 000 years, adding to evidence from bison, mammoths, horses and brown bears that megafaunal populations underwent major genetic alterations throughout the last interstadial, potentially presaging the processes involved in the subsequent end-Pleistocene mass extinctions.     

Linking frugivore activity to early recruitment of a bird dispersed tree,Eugenia umbelliflora (Myrtaceae) in the Atlantic rainforest

Seed dispersal by animals is a complex process involving several distinct stages: fruit removal by frugivores, seed delivery in different microhabitats, seed germination, seedling establishment, and adult recruitment. Nevertheless, studies conducted until now have provided scarce information concerning the sequence of stages in a plant's life cycle in its entirety. The main objective of this study was to evaluate the immediate consequences of frugivore activity for Eugenia umbelliflora (Myrtaceae) early recruitment by measuring the relative importance of each fruit‐eating bird species on the establishment of new seedlings in scrub and low restinga vegetation in the Atlantic rainforest, Brazil. We conducted focal tree observations on E. umbelliflora trees recording birds' feeding behaviour and post‐feeding movements. We also recorded the fate of dispersed seeds in scrub and low restinga vegetation. We recorded 17 bird species interacting with fruits in 55 h of observation. Only 30% of the handled fruits were successfully removed. From 108 post flight movements of exit from the fruiting trees, 30.6% were to scrub and 69.4% to low restinga forest. Proportion of seed germination was higher in low restinga than in the scrub vegetation. Incorporating the probabilities of seeds' removal, deposition, and germination in both sites, we found that the relative importance of each frugivorous bird as seed dispersers varies largely among species. Turdus amaurochalinus and Turdus rufiventris were the best dispersers, together representing almost 12% probability of seed germination following removal. Our results show the importance of assessing the overall consequence of seed dispersal within the framework of disperser effectiveness, providing a more comprehensive and realistic evaluation of the relative importance of different seed dispersers on plant population dynamics.     

Ancient DNA sequences point to a large loss of mitochondrial genetic diversity in the saiga antelope (Saiga tatarica) since the Pleistocene

Prior to the Holocene, the range of the saiga antelope (Saiga tatarica) spanned from France to the Northwest Territories of Canada. Although its distribution subsequently contracted to the steppes of Central Asia, historical records indicate that it remained extremely abundant until the end of the Soviet Union, after which its populations were reduced by over 95%. We have analysed the mitochondrial control region sequence variation of 27 ancient and 38 modern specimens, to assay how the species’ genetic diversity has changed since the Pleistocene. Phylogenetic analyses reveal the existence of two well‐supported, and clearly distinct, clades of saiga. The first, spanning a time range from >49 500 ¹⁴C ybp to the present, comprises all the modern specimens and ancient samples from the Northern Urals, Middle Urals and Northeast Yakutia. The second clade is exclusive to the Northern Urals and includes samples dating from between 40 400 to 10 250 ¹⁴C ybp. Current genetic diversity is much lower than that present during the Pleistocene, an observation that data modelling using serial coalescent indicates cannot be explained by genetic drift in a population of constant size. Approximate Bayesian Computation analyses show the observed data is more compatible with a drastic population size reduction (c. 66–77%) following either a demographic bottleneck in the course of the Holocene or late Pleistocene, or a geographic fragmentation (followed by local extinction of one subpopulation) at the Holocene/Pleistocene transition.     

Geographical variation, sex and age in Great Bittern Botaurus stellaris using coloration and morphometrics

Biometrics, plumage and bare-part colour of 87 Great Bitterns Botaurus stellaris from the UK, France, Italy, Poland and Belarus, of known sex (sexed by behaviour, DNA or dissection), were analysed to provide reliable sexing and ageing criteria for this little-known species, and to investigate geographical variation in biometrics. Four parameters were analysed: bill length, tarsus, wing length and body weight. We found little (though significant) geographical variation across Europe, but this was not clinal and we cannot exclude variation in measurement technique among observers. Males were significantly larger than females for all biometric parameters: a discriminant function based on these parameters was able to sex correctly all individuals. Body weight varied with season, especially for males. During the breeding period, lore colour was also a reliable sex-criterion. Ageing proved more difficult and required a combination of iris colour (which darkens with age) and flight-feather moult. From this, the largest sample size of known-age Great Bitterns, we conclude that most previously published criteria for age determination of this species were wrong.     

Complexity of leaf miner–parasitoid food webs declines with canopy height in Patagonian beech forests

1. Consumer–resource species interactions form complex, dynamic networks, which may exhibit structural heterogeneity at various scales. This study set out to address whether host–parasitoid food web size and topology vary across forest canopy strata, and to what extent foliar resources and species abundances account for vertical patterns in network structure. 2. The vertical stratification of leaf miner–parasitoid food webs was examined in two monotypic beech (Nothofagus pumilio) forests in northern Patagonia, Argentina. Quantitative food webs were constructed for separate canopy layers by sampling foliage from three tree‐height classes at 0.5–1, 2–3 and 5–6 m above ground. 3. Leaf miner abundance per unit leaf mass and foliar damage (%) did not differ across strata, although foliage quality and quantity increased from the understorey to the upper canopy. Parasitism rates and food web complexity decreased with canopy height, as reflected by reduced linkage richness, linkage density, mean interaction strength, and host vulnerability. 4. Null model analyses revealed that food web metrics, especially in the upper canopy, were often lower than expected when compared with randomly structured networks. Overall, these patterns held for two forests differing in vertical structure and in dominant miner morphotype and parasitoid species. 5. These results suggest that vertical declines in network complexity may be driven by the parasitoids' limited functional response to host abundance and dispersal from pupation sites in the forest floor. A broader constraint on food web structure seemed to be imposed by host–parasitoid trait matching, a reflection of large‐scale assembly processes.     

Effect of lead pollution on fitness and its dependence on heterozygosity in Drosophila subobscura

Lead is one of the most present contaminants in the environment, and different species respond differently to this type of pollution. If combined with genomic stress, lead may act synergistically, causing significant decrease of fitness components. We used two genetically diverse Drosophila subobscura populations (regarding both putatively adaptive inversion and microsatellite loci polymorphisms) originating from two ecologically distinct habitats. To establish different levels of genome heterozygosity, series of intraline, intrapopulation and interpopulation crosses were made. The progeny were reared on a standard medium and a medium with 200 μg/mL of lead acetate. Development time was significantly extended to all groups reared on lead. The progeny of intraline crosses showed significantly extended development time compared to all other groups. The obtained results suggest that genome heterozygosity reduces the effect of lead pollution.     

Diatom immigration drives biofilm recovery after chronic copper exposure

1. The impact of immigration on the recovery of diatom assemblages after chronic exposure to copper was investigated in laboratory microcosms. 2. We examined the recovery trajectories of copper‐contaminated biofilms after reducing copper stress and with or without the possibility of immigration from unimpaired communities. 3. The biofilms mixed with unimpaired communities returned to a ‘control’ assemblage structure within 6 weeks, with recovery patterns depending on the endpoint considered (i.e. 2 weeks for relative abundances of diatom species but 6 weeks for total diatom biomass). In contrast, no recovery was observed in assemblages placed under control conditions without external immigrants. 4. Immigration has important effects on the recovery of quantitative and qualitative characteristics of biofilms.     

Transport and fate of dissolved organic carbon in the Lake Pontchartrain esutary,Louisiana, U.S.A.

Cycling dynamics of dissolved organic carbon (DOC) were examinedin Lake Pontchartrain estuary, Louisiana, in relation to changesin freshwater inputs. DOC concentrations ranged from 5.3 to 8.5mg C L-1 reaching their highest during high river inflow.The percentage of DOC represented by HMW DOC (or colloidal material)was greatest (ca. 11%) at stations where freshwaterdischarge from rivers and surrounding wetlands was most significant.Moreover, the lignin-phenol content of this material (ranged from 0.09 to 0.33 and from 0.11 to 0.39)confirmed that a significant fraction of colloidal organic carbon wasderived from terrestrial sources. Riverine and benthic fluxes representedthe dominant sources of DOC to the estuary. On an annual basis, riverineand benthic DOC concentrations were estimated to be 2.8 ×10 10 g C yr-1 and 8.8 × 10 10 g C yr-1, respectively, while the totalDOC pool in the estuary was 3.8 × 10 10 gC. Annual average concentrations of dissolved inorganic carbon (DIC)(1298 M) and pCO2 (5774 atm)were comparable to those found in other freshwater systems that reachedCO2 saturation levels. Net losses of DOC in the LakePontchartrain estuary appeared to be primarily controlled by heterotrophicconsumption (conversion of CO2) – whichmay have been amplified by the long residence time (approximately 120days) of DOC in this system.     

Effect of Phosphatidylcholine on Acrosome Breakdown and Fertilizing Capacity of Amphibian Spermatozoa

The effect of vesicles of purified egg yolk phosphatidylcholine on the fertilizing capacity and acrosome breakdown of amphibian spermatozoa was studied. When Bufo arenarum spermatozoa were incubated with either small unilamellar vesicles (prepared by sonication) or with large unilamellar vesicles (prepared by reverse-phase evaporation) a decrease in the fertilizing capacity of spermatozoa was found. At the same phosphatidylcholine concentration, large unilamellar vesicles were more inhibitory than small unilamellar vesicles. The inhibition was dependent upon the phospholipid concentration and the length of the incubation period. Small unilamellar vesicles did not modify the time course of acrosome breakdown in Leptodactylus chaquensis , while large unilamellar vesicles markedly accelerated the rate of acrosome breakdown. In both biossays, the charge of the vesicles (made either positive or negative by the addition of 5% stearylamine or 5% phosphatidic acid) did not influence their biological effect. Multilamellar vesicles did not alter the fertilizing capacity nor the acrosome breakdown. We conclude that the size and the structure of the vesicles are important parameters in determining the inhibitory capacity of phosphatidyl choline on amphibian fertilization.