Development of highly conserved primers for 12 new polymorphic microsatellite loci for the genus Rorippa Scop. (Brassicaceae), yellow‐cress

We isolated 12 highly conserved polymorphic microsatellite loci for the yellow‐cress species Rorippa amphibia and Rorippa sylvestris. We used a partial genomic library enriched for several repeat motifs. Obtained sequences containing repetitive elements were blasted and aligned with the Arabidopsis thaliana sequence. We evaluated the cross‐species compatibility of primers designed from sequences either aligning strongly or weakly with A. thaliana. The former proved much more efficient in obtaining primers that worked in both species. The developed conserved primers for microsatellite loci provide excellent markers for studying segregation, gene flow and hybridization in the genus Rorippa.     

The effectiveness of some mechanisms of reproductive isolation in Arum maculatum and A. italicum (Araceae)

Mechanisms of reproductive isolation were studied in two species of Arum , A. italicum and A. maculatum , growing in England and the south of France. The study focused on three potential mechanisms for reproductive isolation: the effectiveness of dichogamy as a barrier to autogamy; the ability of self and outcrossed pollen to germinate on stigmas at different stages of anthesis and to effect pollination; and postzygotic barriers to selfing. Dichogamy was found to provide a very effective barrier to within-inflorescence selfing in these species, as no seeds were produced by spontaneous self-pollination (i.e. autogamy) in any population of either species. However, the study found that geitonogamy (cross-pollination between inflorescences of a same individual or clone) was possible, as genotypes frequently produced several inflorescences and stigmas were found to be receptive to pollen from before anthesis until their contraction at the end of the female phase of flowering. Hand pollination with self pollen from clone inflorescences produced as numerous and heavy seeds as outcross pollination. In addition, the germination and growth of geitonogamously produced seed was similar to that of outcrossed seed, suggesting that this potential postzygotic barrier is absent or weak. These findings suggest that geitonogamous seed production may be unrestricted by significant pre- or postzygotic barriers. The possible advantages of geitonogamy in Arum are discussed.  © 2006 The Linnean Society of London, Botanical Journal of the Linnean Society , 2006, 150 , 323–328.     

Estimating fat and protein fuel from fat and muscle scores in passerines

Fat is the prime energy source for birds during prolonged exercise, but protein is also catabolized. Estimates of the amount of catabolizable fat and protein (termed fat and protein fuel) are therefore important for studying energetics of birds. As fat and protein fuel can only be measured by sacrificing individuals or by use of technically complex methods, scoring systems were invented to estimate fat and protein fuel of birds in the field. The visible subcutaneous fat deposits and the thickness of the flight muscles are each scored on an ordinal scale but these scales do not correspond linearly to fat and protein fuel within species, which is needed for analyses such as flight range estimates. We developed an anova ‐type model to estimate fat and protein fuel from fat scores (FS) and muscle scores (MS) along with total mass and a size measurement. Using data from 11 337 individuals of eight passerine species (Common Nightingale Luscinia megarhynchos, Eurasian Reed Warbler Acrocephalus scirpaceus, Melodious Warbler Hippolais polyglotta, Willow Warbler Phylloscopus trochilus, Orphean Warbler Sylvia hortensis, Garden Warbler Sylvia borin, Common Whitethroat Sylvia communis, Subalpine Warbler Sylvia cantillans) mist‐netted in Mauritania, West Africa, we tested for independence of FS and MS and for variation in the relationship between scores and associated mass in response to physiological state. FS, MS and third primary length (size) explained variation in body mass of all eight species analysed (R²: 0.56–0.77). The parameter estimates of the model showed that fat and protein fuel increased monotonically with increasing fat and muscle scores. In two species we found small differences in the estimates between physiological states (seasons). We evaluated our model by comparing the predicted body mass of birds with both FS and MS equal to 0 with the mean body mass of individuals mist‐netted with both scores equal to zero. The values were very close. The amount of fat extracted from dead Garden and Willow Warblers was within the range of predicted fat fuel derived from the model. We conclude that our model is a useful non‐invasive method to estimate simultaneously mean fat and protein fuel of small passerines and we provide recommendations on its use.     

Loading Mode Interactions in Simulations of Long Bone Cross-Sectional Adaptation

Although many bone adaptation theories have been formulated to address both trabecular and cortical adaptation, most applications have focused on trabecular adaptation. Thus far, no thorough investigations of the influence of different types of loading on predicted patterns of long bone cross-sectional adaptation have been reported. In the current study, we present a new model for long bone cross-sectional adaptation that incorporates axial, bending and torsional loading components. We found that bending moments have a strong potential to modulate cross-sectional geometry, but can produce unforseen (and unrealistic) geometric instabilities. Torsional moments have the ability to suppress these instabilities, suggesting that torsion may play a more significant role in guiding long bone development than previously recognized. Our results also call into question the concept of strict “remodeling equilibrium,” suggesting that long bones do not necessarily approach a state of uniform mechanical stimulation. This modeling approach provides an additional perspective on experimental studies, and may lead to a greater understanding of the interaction between mechanics and biology in long bone adaptation.     

Environmental control on the biogeographical distribution of Desmanella (Soricomorpha,Mammalia) in the Miocene of the Iberian Peninsula

Abstract: This paper reports the first record of Desmanella (Mammalia, Soricomorpha) from the Granada Basin in southern Iberian Peninsula, which represents its south‐westernmost occurrence in all Eurasia. It is a controversial taxon whose systematic assignment has been discussed for a long time. This genus belongs to the family Talpidae, a group of insectivores that include extant moles, shrew moles and desmans. Desmanella was very abundant in the late Miocene and early Pliocene of Eurasia, including several basins of northern Iberian Peninsula, but it has not been found until now in southern Iberia. Previous studies have shown that the faunal record and the climatic conditions during the Neogene in the Granada Basin were different from other areas of the Iberian Peninsula. The particular distribution of Desmanella supports the hypothesis that specific climatic features (wetter than neighbouring areas) prevailed in the Granada Basin during the late Turolian (late Miocene).     

Old and stable soil organic matter is not necessarily chemically recalcitrant: implications for modeling concepts and temperature sensitivity

Soil carbon turnover models generally divide soil carbon into pools with varying intrinsic decomposition rates. Although these decomposition rates are modified by factors such as temperature, texture, and moisture, they are rationalized by assuming chemical structure is a primary controller of decomposition. In the current work, we use near edge X‐ray absorption fine structure (NEXAFS) spectroscopy in combination with differential scanning calorimetry (DSC) and alkaline cupric oxide (CuO) oxidation to explore this assumption. Specifically, we examined material from the 2.3–2.6 kg L^?1 density fraction of three soils of different type (Oxisol, Alfisol, Inceptisol). The density fraction with the youngest ¹⁴C age (Oxisol, 107 years) showed the highest relative abundance of aromatic groups and the lowest O‐alkyl C/aromatic C ratio as determined by NEXAFS. Conversely, the fraction with the oldest C (Inceptisol, 680 years) had the lowest relative abundance of aromatic groups and highest O‐alkyl C/aromatic C ratio. This sample also had the highest proportion of thermally labile materials as measured by DSC, and the highest ratio of substituted fatty acids to lignin phenols as indicated by CuO oxidation. Therefore, the organic matter of the Inceptisol sample, with a ¹⁴C age associated with ‘passive’ pools of carbon (680 years), had the largest proportion of easily metabolizable organic molecules with low thermodynamic stability, whereas the organic matter of the much younger Oxisol sample (107 years) had the highest proportion of supposedly stable organic structures considered more difficult to metabolize. Our results demonstrate that C age is not necessarily related to molecular structure or thermodynamic stability, and we suggest that soil carbon models would benefit from viewing turnover rate as codetermined by the interaction between substrates, microbial actors, and abiotic driving variables. Furthermore, assuming that old carbon is composed of complex or ‘recalcitrant’ compounds will erroneously attribute a greater temperature sensitivity to those materials than they may actually possess.     

Phenological responses to extreme droughts in a Mediterranean forest

Mediterranean regions are projected to experience more frequent, prolonged and severe drought as a consequence of climate change. We used a retractable rainfall shelter, to investigate the impact of extreme droughts on the development of Quercus ilex leaves, flowers and fruit. In 2008, 97% of rainfall was excluded from a forest plot during the autumn, representing 50% of the 1127 mm of rain that fell during the year. In 2009, 87% of rainfall was excluded during the spring, representing 58% of the 749 mm that fell during the year. The rainfall shelter did not impact neither incident radiation nor air temperature. Autumn rainfall exclusion did not significantly affect leaf, flowers or fruit development. Spring rainfall exclusion resulted in larger and more sustained depression of leaf water potential during the key phases of foliar and floral development. Consequently, only half of the sampled trees (6) reached the shoot lengthening stage which leads to functionally mature leaves (phenophase 4), with one abandoning leaf development at budburst (phenophase 3) and the other two at the bud swelling stage (phenophase 2). All trees of the control plot passed phenophase 4, with most reaching complete leaf development. The impact of extreme droughts on flower development differed between the sexes. The spring exclusion had no effect on male flower, but only one of six trees completed female fruit maturation, compared with four in the control plot. The difference between the male and female drought impacts is likely attributable to the occurrence of male floral development before the period of lowest leaf water potential, and to the lower resource allocation requirements of male flowers. The information provided by our experimental approach may constitute a crucial step to evaluate the impact of increasing drought due to climate change on the most dominant Mediterranean tree species and to help drawing a full picture of the ecological consequences of the decline in water resource on forest dynamics under changing conditions.