A bacterial DNA repair pathway specific to a natural antibiotic

All organisms possess DNA repair pathways that are used to maintain the integrity of their genetic material. Although many DNA repair pathways are well understood, new pathways continue to be discovered. Here, we report an antibiotic specific DNA repair pathway in Bacillus subtilis that is composed of a previously uncharacterized helicase (mrfA) and exonuclease (mrfB). Deletion of mrfA and mrfB results in sensitivity to the DNA damaging agent mitomycin C, but not to any other type of DNA damage tested. We show that MrfAB function independent of canonical nucleotide excision repair, forming a novel excision repair pathway. We demonstrate that MrfB is a metal‐dependent exonuclease and that the N‐terminus of MrfB is required for interaction with MrfA. We determined that MrfAB failed to unhook interstrand cross‐links in vivo, suggesting that MrfAB are specific to the monoadduct or the intrastrand cross‐link. A phylogenetic analysis uncovered MrfAB homologs in diverse bacterial phyla, and cross‐complementation indicates that MrfAB function is conserved in closely related species. B. subtilis is a soil dwelling organism and mitomycin C is a natural antibiotic produced by the soil bacterium Streptomyces lavendulae. The specificity of MrfAB suggests that these proteins are an adaptation to environments with mitomycin producing bacteria.     

Statistical study of sexual dimorphism in the human fetal sciatic notch

Whether human fetal skeletal remains exhibit sexual dimorphism has been the subject of considerable debate. Most attention in this debate has focused on the greater sciatic notch of the ilium, since it is a gross morphological characteristic with known sex differences in the adult and is easily seen in fetal skeletal remains. Unfortunately, previous traditional morphometric analyses of the fetal sciatic notch have led to ambiguous results. The purpose of this study is to determine whether differences between the sexes can be discerned when modern morphometric techniques are applied to the fetal sciatic notch. Photographs of the ventral side of 133 fetal ilia of known age and sex from the Trotter Collection of Washington University were digitized, and the trace coordinates used for all subsequent analyses. The results of the analysis demonstrate that there is significant sexual dimorphism in the anterior to posterior location of the maximum depth of the sciatic notch, but that the depth of the notch itself is not dimorphic. While there is significant sexual dimorphism in the shape of the sciatic notch, the amount of overlap between males and females is too great for the sciatic notch to be used as a reliable indicator of sex. © 1995 Wiley-Liss, Inc.     

INTERSPECIFIC INCOMPATIBILITY IN GOSSYPIUM. II. LIGHT AND ELECTRON MICROSCOPE STUDIES OF CELL NECROSIS AND TUMORIGENESIS IN HYBRIDS OF G. KLOTZSCHIANUM

Many Gossypium interspecific hybrids that involve G. klotzschianum result in either embryo or seedling lethals. Histologically, lethal symptoms are characterized by necrotic cells and tumors that appear 10–15 days after fertilization in the embryo lethals and at the first true-leaf stage in the seedling lethals. Ultrastructural studies of cell necrosis in seedling lethals show that the first subcellular abnormality is the degeneration of the inner membrane and cristae of the mitochondria. Mitochondrial degeneration is essentially complete before other organelles show evidence of structural aberrations.     

Shunting inhibition, a silent step in visual cortical computation

Brain computation, in the early visual system, is often considered as a hierarchical process in which features extracted in a given sensory relay are not present in previous stages of integration. In particular, orientation preference and its fine tuning selectivity are functional properties shared by most cortical cells and they are not observed at the preceding geniculate stage. A classical problem is identifying the mechanisms and circuitry underlying these computations. Several organizational principles have been proposed, giving different weights to the feedforward thalamocortical drive or to intracortical recurrent architectures. Within this context, an important issue is whether intracortical inhibition is fundamental for the genesis of stimulus selectivity, or rather normalizes spike response tuning with respect to other features such as stimulus strength or contrast, without influencing the selectivity bias and preference expressed in the excitatory input alone. We review here experimental observations concerning the presence or absence of inhibitory input evoked by non-preferred orientation/directions. Intracellular current clamp and voltage clamp recordings are analyzed in the light of new methods allowing us (1) to increase the visibility of inhibitory input, and (2) to continuously measure the visually evoked dynamics of input conductances. We conclude that there exists a diversity of synaptic input combinations generating the same profile of spike-based orientation selectivity, and that this diversity most likely reflects anatomical non-homogeneities in input sampling provided by the local context of the columnar and lateral intracortical network in which the considered cortical cell is embedded.     

Recombination within mouse <Emphasis Type="Italic">t</Emphasis> haplotypes has replaced significant segments of <Emphasis Type="Italic">t</Emphasis>-specific DNA

Previous studies on the fourth inversion of the t complex, In17(4), suggest that loci near the center of this inversion have been subjected to segmental recombination during the past 1–2 million years. We have used a combination of PCR-based restriction site (PBR) analysis and DNA sequencing to perform a high-resolution analysis of a 2-million base pair (Mbp) segment in the middle of In17(4). We examined 21 restriction sites that are polymorphic between t haplotypes and their wild-type homologs, over nine distinct loci. In addition, we examined several other polymorphic sites through DNA sequence analysis of two of these nine loci. We analyzed several haplotypes in this way, including the “complete” t haplotypes t ^w2 , t ⁰ , t ^w32 , t ^w71 , and t ^w75 . We show that only t ^w32 is a true “complete” t haplotype; the remaining four t haplotypes have segments of wild-type DNA ranging from less than 100 bp to 2 Mbp. The sizes of these wild-type DNA segments are consistent with their being generated by gene-conversion events. The 2-Mbp segment is located in a region that may contain the t-complex distorter gene Tcd2. One of the nine loci examined in this study is Fgd2, a gene that has been proposed to encode Tcd2. Sequencing and PBR data show that at least a portion of the Fgd2 gene has been converted to the wild-type within t ^w71 and t ^w75 mice.