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Luis Lado-Monserrat Cristina Lull Inmaculada Bautista Antonio Lidón Rafael Herrera 《Plant and Soil》2014,379(1-2):21-34
Aims
The Birch effect is a pulse in soil C and N mineralization caused by the wetting of dry soils, but the role of the soil moisture increment (ΔSWC) is still poorly understood. We quantified the relationship between ΔSWC and the Birch effect, and its interactions with pre-wetting soil moisture (preSWC) and substrate supply.Methods
Two soils (clay loam and sandy loam) under a Pinus halepensis forest were subjected to rewetting in laboratory treatments combining different ΔSWC and preSWC values, with or without additional substrate (5 mg g-1 P. halepensis needles). Respiration flush (ΔR), changes in microbial biomass C (MBC) and net N mineralization (NMIN) were measured.Results
Overall, we found a relationship with the form: ΔR?=?a ΔSWC?+?b, where the slope (a) was significant only when pre-wetting water potential was below a threshold value in the range of ?100 to ?1,200 kPa. However, the threshold alone does not fully describe the role of preSWC in slope variability. Substrate addition modified the ΔSWC sensitivity of Birch effect, enhancing it in the clay loam and suppressing it in the sandy loam.Conclusions
The intensity of the wetting is a dominant factor regulating Birch effect, and ΔSWC is useful for its quantification. 相似文献74.
75.
RAFAEL G. SEVILLA AMALIA DIEZ MICHAEL NORN OLIVIER MOUCHEL MARC JR
ME VRONIQUE VERREZ‐BAGNIS HILDE VAN PELT LAURENCE FAVRE‐KREY GRIGORIOS KREY THE FISHTRACE CONSORTIUM JOS M. BAUTISTA 《Molecular ecology resources》2007,7(5):730-734
This report describes a set of 21 polymerase chain reaction primers and amplification conditions developed to barcode practically any teleost fish species according to their mitochondrial cytochrome b and nuclear rhodopsin gene sequences. The method was successfully tested in more than 200 marine fish species comprising the main Actinopterygii family groups. When used in phylogenetic analyses, its combination of two genes with different evolutionary rates serves to identify fish at the species level. We provide a flow diagram indicating our validated polymerase chain reaction amplification conditions for barcoding and species identification applications as well as population structure or haplotyping analyses, adaptable to high‐throughput analyses. 相似文献
76.
Katherine ME Turner William P Hanage Christophe Fraser Thomas R Connor Brian G Spratt 《BMC microbiology》2007,7(1):30
Background
The program eBURST uses multilocus sequence typing data to divide bacterial populations into groups of closely related strains (clonal complexes), predicts the founding genotype of each group, and displays the patterns of recent evolutionary descent of all other strains in the group from the founder. The reliability of eBURST was evaluated using populations simulated with different levels of recombination in which the ancestry of all strains was known. 相似文献77.
Wenling E Chang Keri Sarver Brandon W Higgs Timothy D Read Nichole ME Nolan Carol E Chapman Kimberly A Bishop-Lilly Shanmuga Sozhamannan 《BMC bioinformatics》2011,12(1):109
Background
OmniLog™ phenotype microarrays (PMs) have the capability to measure and compare the growth responses of biological samples upon exposure to hundreds of growth conditions such as different metabolites and antibiotics over a time course of hours to days. In order to manage the large amount of data produced from the OmniLog™ instrument, PheMaDB (Phenotype Microarray DataBase), a web-based relational database, was designed. PheMaDB enables efficient storage, retrieval and rapid analysis of the OmniLog™ PM data. 相似文献78.
Margot ME Gosman Dirkje S Postma Judith M Vonk Bea Rutgers Monique Lodewijk Mieke Smith Marjan A Luinge Nick HT ten Hacken Wim Timens 《Respiratory research》2008,9(1):1-9
Background
Surfactant protein D (SP-D), an innate immune molecule, plays an important protective role during airway inflammation. Deficiency of this molecule induces emphysematous changes in murine lungs, but its significance in human COPD remains unclear.Methods
We collected bronchoalveolar lavage fluid from 20 subjects with varying degrees of COPD (8 former smokers and 12 current smokers) and 15 asymptomatic healthy control subjects (5 never smokers, 3 remote former smokers, and 7 current smokers). All subjects underwent a complete medical history and pulmonary function testing. SP-D was measured by Enzyme-Linked ImmunoSorbent Assay. Statistical analysis was performed using nonparametric methods and multivariable linear regression for control of confounding. The effect of corticosteroid treatment on SP-D synthesis was studied in vitro using an established model of isolated type II alveolar epithelial cell culture.Results
Among former smokers, those with COPD had significantly lower SP-D levels than healthy subjects (median 502 and 1067 ng/mL, respectively, p = 0.01). In a multivariable linear regression model controlling for age, sex, race, and pack-years of tobacco, COPD was independently associated with lower SP-D levels (model coefficient -539, p = 0.04) and inhaled corticosteroid use was independently associated with higher SP-D levels (398, p = 0.046). To support the hypothesis that corticosteroids increase SP-D production we used type II alveolar epithelial cells isolated from adult rat lungs. These cells responded to dexamethasone treatment by a significant increase of SP-D mRNA (p = 0.041) and protein (p = 0.037) production after 4 days of culture.Conclusion
Among former smokers, COPD is associated with lower levels of SP-D and inhaled corticosteroid use is associated with higher levels of SP-D in the lung. Dexamethasone induced SP-D mRNA and protein expression in isolated epithelial cells in vitro. Given the importance of this molecule as a modulator of innate immunity and inflammation in the lung, low levels may play a role in the pathogenesis and/or progression of COPD. Further, we speculate that inhaled steroids may induce SP-D expression and that this mechanism may contribute to their beneficial effects in COPD. Larger, prospective studies are warranted to further elucidate the role of surfactant protein D in modulating pulmonary inflammation and COPD pathogenesis. 相似文献79.
Functional changes in human leukemic cell line HL-60. A model for myeloid differentiation 总被引:12,自引:0,他引:12 下载免费PDF全文
Polar solvents induce terminal differentiation in the human promyelocytic leukemia cell line HL-60. The present studies describe the functional changes that accompany the morphologic progression from promyelocytes to bands and poly-morphonuclear leukocytes (PMN) over 9 d of culture in 1.3 percent dimethylsulfoxide (DMSO). As the HL-60 cells mature, the rate of O(2-) production increase 18-fold, with a progressive shortening of the lag time required for activation. Hexosemonophosphate shunt activity rises concomitantly. Ingestin of paraffin oil droplets opsonized with complement or Ig increases 10-fold over 9 d in DMSO. Latex ingestion per cell by each morphologic type does not change significantly, but total latex ingestion by groups of cells increases with the rise in the proportion of mature cells with greater ingestion capacities. Degranulation, as measured by release of β-glucuronidase, lysozyme, and peroxidase, reaches maximum after 3-6 d in DMSO, then declines. HL-60 cells contain no detectable lactoferrin, suggesting that their secondary granules are absent or defective. However, they kill staphylococci by day 6 in DMSO. Morphologically immature cells (days 1-3 in DMSO) are capable of O(2-) generation, hexosemonophosphate shunt activity, ingestion, degranulation, and bacterial killing. Maximal performance of each function by cells incubated in DMSO for longer periods of time is 50-100 percent that of normal PMN. DMSO- induced differentiation of HL-60 cells is a promising model for myeloid development. 相似文献
80.
DENIS FOURNIER JULIEN FOUCAUD ANNE LOISEAU SANDRINE CROS‐ARTEIL HERV JOURDAN JR
ME ORIVEL JULIEN LE BRETON JEAN CHAZEAU ALAIN DEJEAN LAURENT KELLER ARNAUD ESTOUP 《Molecular ecology resources》2005,5(2):239-242
Highly polymorphic genetic markers provide a useful tool for estimating genetic parameters in studies of the evolution of sociality in insects. We isolated and characterized 12 polymorphic microsatellite loci in the invasive ant, Wasmannia auropunctata, and described experimental conditions for PCR (polymerase chain reaction) multiplexing and simultaneously genotyping these loci in two sets of five and seven markers. The number of alleles per locus ranged from two to 14 and the observed heterozygosity ranged from 0.233 to 0.967. Moreover, results of cross‐species amplification tests are reported in three other species of Wasmannia and in two species of the genus Allomerus. 相似文献