Bile acid binding in plasma: the importance of lipoproteins

Bile acid (BA) hydrophobicity, evaluated by the octanol-water partition coefficient, decreases along the series deoxycholic acid-chenodeoxy cholic acid-hyodeoxycholic acid-ursodeoxycholic acid-cholic acid (CA)-ursocholic acid (UCA). In vitro experiments carried out using dialysis techniques (to determine the maximum BA binding) and ultrafiltration of plasma pre-incubated with 0.1 mM BA (to assess the distribution of BA between the different lipoprotein fractions) showed that the maximum binding of BA to plasma and lipoproteins follows the same order of hydrophobicity. The fraction not bound to proteins, greater with the hydrophilic BA (UCA and CA), is distributed in the lipoprotein fractions and in particular in high density lipoproteins.     

A comparative genomics study of genetic products potentially encoding ladderane lipid biosynthesis

Background  

The fatty acids of anaerobic ammonium oxidizing (anammox) bacteria contain linearly concatenated cyclobutane moieties, so far unique to biology. These moieties are under high ring strain and are synthesised by a presently unknown biosynthetic pathway.     

Thymic output and functionality of the IL-7/IL-7 receptor system in centenarians: implications for the neolymphogenesis at the limit of human life

During aging, the thymus undergoes a marked involution that is responsible for profound changes in the T‐cell compartment. To investigate the capacity of the thymus to produce new cells at the limit of human lifespan, we analyzed some basic mechanisms responsible for the renewal and maintenance of peripheral T lymphocytes in 44 centenarians. Thymic functionality was analyzed by the quantification of cells presenting the T‐cell receptor rearrangement excision circles (TREC). A new method based upon real‐time PCR was used, and we found that most centenarians (84%) had undetectable levels of TREC+ cells. Six‐color cytofluorimetric analysis revealed that centenarians had an extremely low number of naïve T cells; central memory and effector memory T cells were greatly increased, while terminally differentiated cells were as numerous as in young (aged 20–45) or middle‐aged (aged 58–62) donors. Interleukin (IL)‐7 and IL‐7 receptor α‐chain (CD127) levels were the same at all ages, as shown by ELISA, flow cytometry and real‐time PCR. However, IL‐7 plasma levels were higher in centenarian females than males. The presence of TREC+ cells and of very few naïve T lymphocytes suggests that in centenarians such cells could either derive from residues of thymic lymphopoietic islets, or even represent long‐living lymphocytes that have not yet encountered their antigen. IL‐7 could be one of the components responsible, among others, for the higher probability of reaching extreme ages typical of females.     

Expression of microRNAs and their precursors in synaptic fractions of adult mouse forebrain

We have characterized the expression of microRNAs and selected microRNA precursors within several synaptic fractions of adult mouse forebrain, including synaptoneurosomes, synaptosomes and isolated post-synaptic densities (PSDs), using methods of microRNA microarray, real time qRT-PCR, Northern blotting and immunopurification using anti-PSD95 antibody. The majority of brain microRNAs (especially microRNAs known to be expressed in pyramidal neurons) are detectably expressed in synaptic fractions, and a subset of microRNAs is significantly enriched in synaptic fractions relative to total forebrain homogenate. MicroRNA precursors are also detectable in synaptic fractions at levels that are comparable to whole tissue. Whereas mature microRNAs are predominantly associated with soluble components of the synaptic fractions, microRNA precursors are predominantly associated with PSDs. For seven microRNAs examined, there was a significant correlation between the relative synaptic enrichment of the precursor and the relative synaptic enrichment of the corresponding mature microRNA. These findings support the proposal that microRNAs are formed, at least in part, via processing of microRNA precursors locally within dendritic spines. Dicer is expressed in PSDs but is enzymatically inactive until conditions that activate calpain cause its liberation; thus, we propose that synaptic stimulation may lead to local processing of microRNA precursors in proximity to the synapse.     

The nest-holding grass goby (Zosterisessor ophiocephalus) male adjusts the spawning activity in relation to parasitic nest intrusions

This study examines the temporal pattern of spawning behavior by the territorial (i.e. nest-holding) grass goby male, Zosterisessor ophiocephalus, in response to sneak intrusions by the small parasitic male under controlled laboratory conditions. The spawning activity of the territorial male consists of a sequence of upside–down movements on the ceiling of the nest accompanied by undulations of the body and sperm release. Five pairs of one territorial male and one parasitic male, each kept inside a large tank provided with an artificial buried nest (always occupied by the territorial male) and one small tunnel-shaped shelter (always occupied by the small male), were observed during one-female spawning taking place in the innermost part of the nest (i.e. the nest chamber). During the spawning, the presence of the small male nearby the nest openings elicited aggressive behavior and increased nest patrolling by the territorial male. In one spawn the small male never attempted to enter the nest. In four spawns the small male entered one to three times the nest chamber (sneaks), staying there from 2 to 203 s until the large male chased him away. The temporal patterning of the spawning activity by the territorial male (bouts of upside–down, U–D), and its changes following a sneak by the small male, were investigated using bout analysis and correlative tests. Results showed the length of bouts U–D did not change significantly after a sneak intrusion. whereas gap length (i.e. the period between subsequent bouts U–D) decreased significantly after each sneak intrusion. The mean duty cycle of bouts U–D tended to be positively correlated to the number of sneaker intrusions of each replicate. Results are discussed in the light of current knowledge on sperm competition among externally fertilizing teleosts.     

Analysis of cardiac signals using spatial filling index and time-frequency domain

Background  

Analysis of heart rate variation (HRV) has become a popular noninvasive tool for assessing the activities of the autonomic nervous system (ANS). HRV analysis is based on the concept that fast fluctuations may specifically reflect changes of sympathetic and vagal activity. It shows that the structure generating the signal is not simply linear, but also involves nonlinear contributions. These signals are essentially non-stationary; may contain indicators of current disease, or even warnings about impending diseases. The indicators may be present at all times or may occur at random in the time scale. However, to study and pinpoint abnormalities in voluminous data collected over several hours is strenuous and time consuming.     

A Quantitative Analysis of the Courtship Acoustic Behaviour and Sound Patterning in Male Sand Goby, <Emphasis Type="Italic">Pomatoschistus minutus</Emphasis>

Many animal groups use sounds in reproduction in order to court mates or repel rivals. We describe the sounds and behavioural context of courtship sound production in male sand gobies, Pomatoschistus minutus, and examine the variability of acoustic parameters and the fine temporal patterning of sound units. Male sand gobies excavate a nest under a suitable solid substrate and attract females to mate, attaching the eggs to the ceiling of the nest. Before mating a female may repeatedly enter and leave a male's nest. Sounds were not detected during the courtship phase outside the nest, but were recorded when females were in the nest before spawning. Sounds were produced in 44–100% of such nest visits, varying with individual males. The sand goby sound consists of a train of pulses repeated at a rate of 23–29 pulses per second. The frequency spectrum of single pulses was continuous from 20–30Hz to 500Hz and reached a peak around 100Hz. The absolute sound pressure level ranged from 118 to 138dB re 1µPa at 1–3cm. The sand goby emits sound in distinct sound groups (bursts). Sound temporal features (duration, pulse repetition rate) vary systematically over the course of the burst. Within- and between-male variation of acoustic parameters was examined from sounds emitted by the male. Sound amplitude (peak-to-peak, mV) and pulse rate varied significantly among males, despite low individual stereotypy. Furthermore, sound pressure level correlated with body size. The potential informative content of acoustic parameters is discussed in the light of a possible role of the sand goby sound in mate choice.     

Evolution of transposable elements: an IS10 insertion increases fitness in Escherichia coli

Strains of Escherichia coli carrying Tn10, a transposon consisting of two IS10 insertion sequences flanking a segment encoding for a tetracycline-resistance determinant, gain a competitive advantage in chemostat cultures. All Tn10-bearing strains that increase in frequency during competition have a new IS10 insertion that is found in the same location in the genome of those strains. We mapped, by a gradient of transmission, the position of the new IS10 insertion. We examined 11 isolates whose IS10 insertion was deleted by recombinational crossing- over, and in all cases the competitive fitness of the isolates was decreased. These results show that the IS10-generated insertion increases fitness in chemostat cultures. We named the insertion fit::IS10 and suggest that transposable elements may speed the rate of evolution by promoting nonhomologous recombination between preexisting variations within a genome and thereby generating adaptive variation.