Zooplankton food limitation and grazing impact in a eutrophic brackish-water tropical pond (Côte d'Ivoire, West Africa)

Gut fluorescence, feeding and egg production rates of zooplankton assemblages were measured in a shallow, eutrophic brackish-water pond for 24 days. Brachionus plicatilis, Hexarthra intermedia and Apocyclops panamensis successively developed and exhibited differences in food selectivity. Rotifers selected small particles but also had a preference for larger particles (15–21 μm, Equivalent Spherical Diameter, ESD). B. plicatilis appeared less selective than H. intermedia, which fed mostly on particles <6 μm. A. panamensis adults showed a selectivity for 6–21 μm ESD particles. Laboratory experiments suggested that A. panamensis adults were able to shift from seston to carnivorous feeding, depending on the availability of these food resources. Measurements of gut fluorescence and grazing gave comparable ingestion rates. Rotifers displayed the highest ingestion rates (up to 486% body C d-1). Despite high total phytoplankton and seston biomasses, the high ingestion rates and selective grazing of rotifers induced auto food-limitation phenomena and caused major changes in seston abundance and size structure. Grazing impact was less important when A. panamensis dominated. This revised version was published online in July 2006 with corrections to the Cover Date.     

Comparative Analysis of Genetic Chemotyping Methods for Fusarium: Tri13 Polymorphism Does not Discriminate between 3‐ and 15‐acetylated Deoxynivalenol Chemotypes in Fusarium graminearum

Genetic chemotyping is an essential tool for characterizing Fusarium populations causing head blight on wheat and other cereals. Three PCR methods, based on tri cluster polymorphism, were optimized and compared on 94 single‐spore isolates obtained from three continents belonging to F. gramineaurm, F. culmorum, F. poae, F. avenaceum and Microdochium nivale. While the methods based on the tri3, tri7 and tri12 polymorphism correctly identified all the tested strains, the method based on tri13 polymorphism was unable to discriminate between the 3‐ and 15‐acetylated DON forms in F. graminearum. It is advised to avoid the use of tri13 polymorphism for genetic chemotyping of the two acetylated chemotypes.     

The structure of the human RNase H2 complex defines key interaction interfaces relevant to enzyme function and human disease

Ribonuclease H2 (RNase H2) is the major nuclear enzyme involved in the degradation of RNA/DNA hybrids and removal of ribonucleotides misincorporated in genomic DNA. Mutations in each of the three RNase H2 subunits have been implicated in a human auto-inflammatory disorder, Aicardi-Goutières Syndrome (AGS). To understand how mutations impact on RNase H2 function we determined the crystal structure of the human heterotrimer. In doing so, we correct several key regions of the previously reported murine RNase H2 atomic model and provide biochemical validation for our structural model. Our results provide new insights into how the subunits are arranged to form an enzymatically active complex. In particular, we establish that the RNASEH2A C terminus is a eukaryotic adaptation for binding the two accessory subunits, with residues within it required for enzymatic activity. This C-terminal extension interacts with the RNASEH2C C terminus and both are necessary to form a stable, enzymatically active heterotrimer. Disease mutations cluster at this interface between all three subunits, destabilizing the complex and/or impairing enzyme activity. Altogether, we locate 25 out of 29 residues mutated in AGS patients, establishing a firm basis for future investigations into disease pathogenesis and function of the RNase H2 enzyme.     

Border and ecotone detection by vegetation composition along forest‐savanna transects in Ivory Coast

Abstract. Question: How do properties of different vegetation components vary along ecotones of semi‐deciduous forest islands, and can the depth of edge influence (DEI) of the components be detected using a novel combination of analyses? Location: Comoé National Park (CNP), NE Ivory Coast. Methods: Along eight transects at semi‐deciduous forest islands tree individuals > 20 cm DBH were mapped. At one transect, tree and shrub individuals down to 1 cm DBH were measured and cover of species was estimated. Split moving window dissimilarity analysis (SMWDA) and moving window regression analysis (MWRA) were combined to detect statistical significance of borders in multivariate vegetation data along continuous transects, to determine the width of associated ecotones, and, thus, the DEI towards the forest interior. Results: For trees > 20 cm DBH, a distinct boundary formation was detected, dominated by the semi‐fire resistant tree species Anogeissus leiocarpus. The median of DEI towards the forest interior was 55 m. Ecotone detection with all species present revealed an interlocked sequence of ecotones for grasses, herbs, woody climbers, shrubs and trees, with each of these ecotones being narrower than the overall ecotone. DEI ranged from 10 m for grasses up to 120 m for trees and shrubs. Conclusions: The coherent set of analyses applied proved to be an objective method for detecting borders and the width of associated ecotones. The patterns found may be explained by successional processes at the forest‐savanna border. The DEI measured for the forest islands in the nearly undisturbed semi‐natural system of the CNP is of relevance to concepts of core‐area analysis and the protection of forest interior species in semi‐deciduous forests in tropical West Africa.     

Effects of Pb-EDTA and EDTA on oxidative stress reactions and mineral uptake in Phaseolus vulgaris

Sequestration of Pb by synthetic chelates has been reported to increase bioavailability, uptake, and translocation of this metal in plants. In this work the potential phytotoxic effects of Pb-EDTA were investigated in Phaseolus vulgaris L. cv. Limburgse vroege plants grown on hydroponics. Addition of 50 µ M Pb-EDTA to the nutrient solution caused a significant induction of syringaldazine peroxidase (SPOD; EC 1.11.1.7) in roots and primary leaves and guaiacol peroxidase (GPOD; EC 1.11.1.7) in leaves. Addition of 100 µ M Pb-EDTA further exacerbated ascorbate peroxidase (APOD; EC 1.11.1.11), GPOD, dehydroascorbate reductase (DHAR; EC 1.8.5.1), glutathione reductase (GR; EC 1.6.4.2) and malic enzyme (ME; EC 1.1.1.40) in roots and APOD and ME in primary leaves. Addition of 200 µ M Pb-EDTA also induced DHAR in leaves. This induction of peroxidases (SPOD, GPOD, APOD), enzymes of the ascorbate-glutathione cycle (DHAR, GR in roots) and of an NADP⁺ reducing enzyme in roots and primary leaves indicates that oxidative stress has been initiated. At 200 µ M Pb-EDTA, chlorophyll a and b content in leaves was significantly reduced while visible effects on root morphology and shoot length were observed, while no significant morphological effects were found in the leaves, confirming the sensitive character of the measured enzymes as plant stress indicators. Elevation of the Pb-EDTA concentration in the growth medium significantly reduced the content of Ca, Fe, Mn and Zn taken up by plants, probably due to ion leakage as a result of observed toxicity. Addition of up to 200 µ M EDTA increased chelation of divalent cations in nutrient solution resulting in reduced plant uptake of Zn, Cu, Fe and Mn. This did not result in phytotoxicity.     

Mapping of a Gene for Long QT Syndrome to Chromosome 4q25-27

Long QT syndrome (LQTS) is a heterogeneous inherited disorder causing syncope and sudden death from ventricular arrhythmias. A first locus for this disorder was mapped to chromosome 11p15.5. However, locus heterogeneity has been demonstrated in several families, and two other loci have recently been located on chromosomes 7q35-36 and 3p21-24. We used linkage analysis to map the locus in a 65-member family in which LQTS was associated with more marked sinus bradycardia than usual, leading to sinus node dysfunction. Linkage to chromosome 11p15.5, 7q35-36, or 3p21-24 was excluded. Positive linkage was obtained for markers located on chromosome 4q25-27. A maximal LOD score of 7.05 was found for marker D4S402. The identification of a fourth locus for LQTS confirms its genetic heterogeneity. Locus 4q25-27 is associated with a peculiar phenotype within the LQTS entity.     

Replication of prophage P1 during the cell cycle of Escherichia coli.

Summary We have followed, by DNA-DNA hybridization, the variation in the number of copies of prophage P1 relative to two chromosomal markers when the doubling time of the host cells is modified by a change in carbon source. The ratio of P1/chromosome terminus undergoes a twofold decrease when the cell doubling time increases from 24 to 215 min, whereas the ratio of P1/chromosome origin increases 1.4 fold; both ratios tend towards unity at slow growth rates. This suggests that the replication of prophage P1 is not simultaneous with chromosome initiation or chromosome termination. The chromosome replication time is unaffected by the presence of P1, and remains constant over the range of doubling times studied, with a value of about 40 min. Following amino acid starvation, the P1/chromosome origin ratio increases from 0.7 to 0.9, suggesting that P1 retains the ability to replicate after chromosome initiation has stopped and in the absence of essential amino acids. The results are discussed with reference to similar studies done on F and R1.     

Biochemical characterization of a strictly specific beta-galactosidase from the digestive juice of the palm weevil Rhynchophorus palmarum larvae

A beta‐galactosidase from the digestive juice of the palm weevil Rhynchophorus palmarum L. larvae was purified by chromatography on ion exchange, gel filtration, and hydrophobic interaction columns. The preparation was shown to be homogeneous on polyacrylamide gel. Beta‐galactosidase was a monomeric protein with a molecular weight of 62 kDa based on its mobility in sodium dodecyl sulfate–polyacrylamide gel electrophoresis and 60 kDa based on gel filtration. Maximal enzyme activity occurred at 55°C and pH 5.0. The purified beta‐galactosidase was stable at 37°C and its pH stability was in the range of 4.6–6.0. Beta‐galactosidase was highly specific for the beta‐d ‐galactosyl residue and beta‐(1‐4) linkage. The catalytic efficiency (V_max/K_m) values for p‐nitrophenyl‐beta‐d ‐galactopyranoside, beta‐d ‐galactosyl(1‐4)‐d ‐glucose (lactose), beta‐d ‐galactosyl(1‐4)‐d ‐galactose and beta‐d ‐galactosyl(1‐4)‐beta‐d ‐galactosyl(1‐4)‐d ‐glucose were, respectively, 72.95, 10.97, 20.74 and 12.73. 5,5‐Dithio‐bis(2‐nitrobenzoate) and sodium dodecyl sulfate inhibited completely the beta‐galactosidase activity. The enzyme was capable of catalyzing transgalactosylation reactions. The yield of galactosylation of 2‐phenylethanol (43%), catalyzed by the beta‐galactosidase in the presence of lactose as galactosyl donor, is higher than those reported previously with conventional sources of beta‐galactosidases. In addition, the optimum pH is different for the hydrolysis (pH 5.0) and transgalactosylation reactions (pH 6.0).     

"Visual Anthropology Is Dead, Long Live Visual Anthropology!"

Rethinking Visual Anthropology. Marcus Banks and Howard Morphy. eds. New Haven, CT: Yale University Press, 1997. 306 pp.
Principles of Visual Anthropology. Paul Hockings. ed. Berlin: Mouton de Gruyter, 1995. 562 pp.
Fields of Vision: Essays in Film Studies, Visual Anthropology, and Photography. Leslie Devereaux and Roger Hillman. eds. Berkeley: University of California Press, 1995. 362 pp.