Control of carbohydrate metabolism in an anoxia-tolerant nervous system

Anoxia-tolerant animal models are crucial to understand protective mechanisms during low oxygen excursions. As glycogen is the main fermentable fuel supporting energy production during oxygen tension reduction, understanding glycogen metabolism can provide important insights about processes involved in anoxia survival. In this report we studied carbohydrate metabolism regulation in the central nervous system (CNS) of an anoxia-tolerant land snail during experimental anoxia exposure and subsequent reoxygenation. Glucose uptake, glycogen synthesis from glucose, and the key enzymes of glycogen metabolism, glycogen synthase (GS) and glycogen phosphorylase (GP), were analyzed. When exposed to anoxia, the nervous ganglia of the snail achieved a sustained glucose uptake and glycogen synthesis levels, which seems important to maintain neural homeostasis. However, the activities of GS and GP were reduced, indicating a possible metabolic depression in the CNS. During the aerobic recovery period, the enzyme activities returned to basal values. The possible strategies used by Megalobulimus abbreviatus CNS to survive anoxia are discussed.     

Aqueous-phase quantitative NMR determination of amino acid enantiomer ratio by 13C-NMR using chiral neodymium shift reagent

A neodymium-(S)-PDTA (PDTA = N,N,N′,N′-tetrakis[(hydroxycarbonyl)methyl]-1,2-diaminopropane) complex was found exceptionally useful in the quantitative determination of enantiomer ratios of water-soluble natural amino acids by ¹³C-NMR. The method is demonstrated on mixtures of l- and d-enantiomers of various amino acids. The interactions of the chiral shift reagent with the amino acid molecules were rationalized by molecular orbital calculations.     

The caspase‐cleaved form of LYN mediates a psoriasis‐like inflammatory syndrome in mice

We showed previously that Lyn is a substrate for caspases, a family of cysteine proteases, involved in the regulation of apoptosis and inflammation. Here, we report that expression of the caspase‐cleaved form of Lyn (LynΔN), in mice, mediates a chronic inflammatory syndrome resembling human psoriasis. Genetic ablation of TNF receptor 1 in a LynΔN background rescues a normal phenotype, indicating that LynΔN mice phenotype is TNF‐α‐dependent. The predominant role of T cells in the disease occurring in LynΔN mice was highlighted by the distinct improvement of LynΔN mice phenotype in a Rag1‐deficient background. Using pan‐genomic profiling, we also established that LynΔN mice show an increased expression of STAT‐3 and inhibitory members of the NFκB pathway. Accordingly, LynΔN alters NFκB activity underlying a link between inhibition of NFκB and LynΔN mice phenotype. Finally, analysis of Lyn expression in human skin biopsies of psoriatic patients led to the detection of Lyn cleavage product whose expression correlates with the activation of caspase 1. Our data identify a new role for Lyn as a regulator of psoriasis through its cleavage by caspases.     

Chromosome‐level hybrid de novo genome assemblies as an attainable option for nonmodel insects

The emergence of third‐generation sequencing (3GS; long‐reads) is bringing closer the goal of chromosome‐size fragments in de novo genome assemblies. This allows the exploration of new and broader questions on genome evolution for a number of nonmodel organisms. However, long‐read technologies result in higher sequencing error rates and therefore impose an elevated cost of sufficient coverage to achieve high enough quality. In this context, hybrid assemblies, combining short‐reads and long‐reads, provide an alternative efficient and cost‐effective approach to generate de novo, chromosome‐level genome assemblies. The array of available software programs for hybrid genome assembly, sequence correction and manipulation are constantly being expanded and improved. This makes it difficult for nonexperts to find efficient, fast and tractable computational solutions for genome assembly, especially in the case of nonmodel organisms lacking a reference genome or one from a closely related species. In this study, we review and test the most recent pipelines for hybrid assemblies, comparing the model organism Drosophila melanogaster to a nonmodel cactophilic Drosophila, D. mojavensis. We show that it is possible to achieve excellent contiguity on this nonmodel organism using the dbg2olc pipeline.     

Using richness of native and non-native aquatic species along a climatic gradient to test the intermediate disturbance hypothesis

The intermediate disturbance hypothesis (IDH) has been thoroughly investigated, but much controversy has been found for supporting its assumptions, which rely largely on the nature of the disturbance, spatial scale, and biological predictors tested. In this paper, richness of native and non-native species along a suite of Neotropical aquatic ecosystems across a broad latitudinal and geographical range was used to test the IDH predictions. An extensive literature survey was performed to compile native species richness and the occurrence of several taxonomic groups listed as non-native for twenty-four coastal rivers and bays evenly distributed into three climatic zones (tropical, transitional, and subtropical). The climatic gradient was confirmed by NMDS and PERMANOVA, but IDH predictions were only significantly supported for native and total species richness in the coastal bays. The distribution patterns of non-native marine species showed a linear instead unimodal pattern of increase with latitudinal climatic gradient, but the responses are complex and dependent of many non-exclusive factors, such as the sampling effort per ecosystem and the potential interference of other disturbance gradients that should be further addressed to unravel the role of IDH for non-native species distribution.

     

Parotocinclus jacksoni,a new hypoptopomatine catfish (Siluriformes: Loricariidae) from the Rio Mamanguape basin,north-eastern Brazil

A new species of Parotocinclus is described from the Rio Mamanguape basin, in the State of Paraíba, north-eastern Brazil. The new species can be distinguished from all of its congeners, except for P. bahiensis, P. cesarpintoi, P. jumbo, P. nandae and P. spilosoma, by the presence of an abdomen covered by a few small and dispersed platelets (vs. an abdomen entirely covered by large plates in adult individuals or the absence of plates in that region). The new species differs from those mentioned above with respect to several features, such as an exposed pectoral girdle and supporting odontodes medially and laterally, the number of premaxillary and dentary teeth, odontodes covering only the lateral portion of the cleithrum and the absence of irregular golden lines on the head and body (colour in vivo). The new species was collected only in the upper and middle portions of the Rio Mamanguape basin, suggesting a geographic distribution restricted to the Caatinga biome.     

The signaling requirements for mouse embryonic stem cells

Comment on: ten Berge D, et al. Nat Cell Biol 2011; 13:1070-5. doi:10.1038/ncb2314