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231.
Biodiversity can be represented by different dimensions. While many diversity metrics try to capture the variation of these dimensions they also lead to a ‘fragmentation’ of the concept of biodiversity itself. Developing a unified measure that integrates all the dimensions of biodiversity is a theoretical solution for this problem, however, it remains operationally impossible. Alternatively, understanding which dimensions better represent the biodiversity of a set of communities can be a reliable way to integrate the different diversity metrics. Therefore, to achieve a holistic understand of biological diversity, we explore the concept of dimensionality. We define dimensionality of diversity as the number of complementary components of biodiversity, represented by diversity metrics, needed to describe biodiversity in an unambiguously and effective way. We provide a solution that joins two components of dimensionality – correlation and the variation – operationalized through two metrics, respectively: evenness of eigenvalues (EE) and importance values (IV). Through simulation we show that considering EE and IV together can provide information that is neglected when only EE is considered. We demonstrate how to apply this framework by investigating the dimensionality of South American small mammal communities. Our example evidenced that, for some representations of biological diversity, more attention is needed in the choice of diversity metrics necessary to effectively characterize biodiversity. We conclude by highlighting that this integrated framework provides a better understanding of dimensionality than considering only the correlation component. 相似文献
232.
Benildo S. Cavada Mayara T. L. Silva Vinicius J. S. Osterne Vanir R. Pinto‐Junior Claudia F. Lossio Juliana C. Madeira Maria G. Pereira Rodrigo B. Leal Wandemberg P. Ferreira Kyria S. Nascimento Ana M. S. Assreuy 《Journal of molecular recognition : JMR》2020,33(11)
Lectins are a group of proteins of non‐immune origin recognized for their ability to bind reversibly to carbohydrates. Researchers have been intrigued by oligosaccharides and glycoconjugates for their involvement as mediators of complex cellular events and then many biotechnological applications of lectins are based on glycocode decoding and their activities. Here, we report a structural and biological study of a ConA‐like mannose/glucose‐specific lectin from Canavalia bonariensis seeds, CaBo. More specifically, we evaluate the binding of CaBo with α‐methyl‐D‐mannoside (MMA) and mannose‐1,3‐α‐D‐mannose (M13) and the resultant in vivo effects on a rat model of acute inflammation. A virtual screening was also carried out to cover a larger number of possible bindings of CaBo. In silico analysis demonstrated the stability of CaBo interaction with mannose‐type ligands, and the lectin was able to induce acute inflammation in rats with the participation of the carbohydrate recognition domain (CRD) and histamine release. These results confirm the ability of CaBo to interact with hybrid and high‐mannose N‐glycans, supporting the hypothesis that CaBo's biological activity occurs primarily through its interaction with cell surface glycosylated receptors. 相似文献
233.
234.
Carla Martins Lopes Marta De Barba Frdric Boyer Cline Mercier Daniel Galiano Bruno Busnello Kubiak Renan Maestri Pedro Joel Silva da Silva Filho Ludovic Gielly Eric Coissac Thales Renato Ochotorena de Freitas Pierre Taberlet 《Molecular ecology》2020,29(16):3143-3153
Knowledge of how animal species use food resources available in the environment can increase our understanding of many ecological processes. However, obtaining this information using traditional methods is difficult for species feeding on a large variety of food items in highly diverse environments. We amplified the DNA of plants for 306 scat and 40 soil samples, and applied an environmental DNA metabarcoding approach to investigate food preferences, degree of diet specialization and diet overlap of seven herbivore rodent species of the genus Ctenomys distributed in southern and midwestern Brazil. The metabarcoding approach revealed that these species consume more than 60% of the plant families recovered in soil samples, indicating generalist feeding habits of ctenomyids. The family Poaceae was the most common food resource retrieved in scats of all species as well in soil samples. Niche overlap analysis indicated high overlap in the plant families and molecular operational taxonomic units consumed, mainly among the southern species. Interspecific differences in diet composition were influenced, among other factors, by the availability of resources in the environment. In addition, our results provide support for the hypothesis that the allopatric distributions of ctenomyids allow them to exploit the same range of resources when available, possibly because of the absence of interspecific competition. 相似文献
235.
Julia C. Jones Zhipei G. Du Richard Bernstein Monique Meyer Andreas Hoppe Elmar Schilling Martin Ableitner Katrin Juling Regina Dick Anja S. Strauss Kaspar Bienefeld 《Ecology and evolution》2020,10(13):6246-6256
High‐throughput high‐density genotyping arrays continue to be a fast, accurate, and cost‐effective method for genotyping thousands of polymorphisms in high numbers of individuals. Here, we have developed a new high‐density SNP genotyping array (103,270 SNPs) for honey bees, one of the most ecologically and economically important pollinators worldwide. SNPs were detected by conducting whole‐genome resequencing of 61 honey bee drones (haploid males) from throughout Europe. Selection of SNPs for the chip was done in multiple steps using several criteria. The majority of SNPs were selected based on their location within known candidate regions or genes underlying a range of honey bee traits, including hygienic behavior against pathogens, foraging, and subspecies. Additionally, markers from a GWAS of hygienic behavior against the major honey bee parasite Varroa destructor were brought over. The chip also includes SNPs associated with each of three major breeding objectives—honey yield, gentleness, and Varroa resistance. We validated the chip and make recommendations for its use by determining error rates in repeat genotypings, examining the genotyping performance of different tissues, and by testing how well different sample types represent the queen's genotype. The latter is a key test because it is highly beneficial to be able to determine the queen's genotype by nonlethal means. The array is now publicly available and we suggest it will be a useful tool in genomic selection and honey bee breeding, as well as for GWAS of different traits, and for population genomic, adaptation, and conservation questions. 相似文献
236.
Rka Fekete Judit Bdis Bence Fülp Kristf Süveges Renta Urgyn Tams Malkcs Orsolya Vincze Luís Silva Attila Molnr V. 《Ecology and evolution》2020,10(23):13236
Seminatural habitats are declining throughout the world; thus, the role of small anthropogenic habitats in the preservation of plants is becoming increasingly appreciated. Here, we surveyed the orchid flora of roadside verges in five Central European countries (Austria, Hungary, Romania, Slovakia, and Slovenia) and tested how the surrounding landscape matrix affects the overall number of species and individuals, and also different functional groups of orchids. We found more than 2,000 individuals of 27 orchid species during our surveys. According to our results, the increasing coverage of agricultural and urban areas negatively affects both the number of orchid species and individuals on roadsides. Our study further suggests that differences in the surrounding habitats affect which species are found on roadsides, since the increasing coverage of grasslands or forested areas around orchid occurrences had a significant positive effect on the number of grassland or forest‐dwelling species and individuals, respectively. Most variance in orchid numerosity and diversity was explained by the cover of the suitable habitat types of the respective taxa in the surrounding landscape of the sampling points. This highlights the importance of roadsides acting as refugia for numerous species and valuable plant communities as well as in supporting biodiversity in general. 相似文献
237.
Mikovski Andréia Izabel da Silva Nayara Tayane Silva Lázara Aline Simões Machado Mariana de Souza Barbosa Lília Cristina Reis Aryane Campos de Matos Elyabe Monteiro Viccini Lyderson Facio da Silva Souza Claudinei Machado Marcelo Dias Otoni Wagner Campos de Carvalho Ilio Fealho Rocha Diego Ismael da Silva Maurecilne Lemes 《Plant Cell, Tissue and Organ Culture》2021,145(2):239-259
Plant Cell, Tissue and Organ Culture (PCTOC) - Somaclonal variation during in vitro culture is often an undesirable phenomenon but may also be a source of genetic variation useful for breeders. The... 相似文献
238.
Seminotti Bianca Roginski Ana Cristina Zanatta Ângela Amaral Alexandre Umpierrez Fernandes Thabata Spannenberger Kaleb Pinto da Silva Lucas Henrique Rodrigues Ribeiro Rafael Teixeira Leipnitz Guilhian Wajner Moacir 《Journal of bioenergetics and biomembranes》2021,53(5):525-539
Journal of Bioenergetics and Biomembranes - S-adenosylmethionine (AdoMet) predominantly accumulates in tissues and biological fluids of patients affected by liver dysmethylating diseases,... 相似文献
239.
da Silva Gessiane Pereira de Melo Josi Teixeira Monteiro Frederico Ozanan Barros Ferreira Ana Karolyna Pereira Carneiro Liliane Almeida Takeshita Rafaela S. C. 《International journal of primatology》2021,42(5):722-736
International Journal of Primatology - The hormone dehydroepiandrosterone (DHEA) and its sulfate ester (DHEAS) are the most abundant circulating steroids in human and some nonhuman primates, and... 相似文献
240.
Martinelli L. A. Nardoto G. B. Soltangheisi A. Reis C. R. G. Abdalla-Filho A. L. Camargo P. B. Domingues T. F. Faria D. Figueira A. M. Gomes T. F. Lins S. R. M. Mardegan S. F. Mariano E. Miatto R. C. Moraes R. Moreira M. Z. Oliveira R. S. Ometto J. P. H. B. Santos F. L. S. Sena-Souza J. Silva D. M. L. Silva J. C. S. S. Vieira S. A. 《Biogeochemistry》2021,154(2):425-426
Biogeochemistry - The initial online publication contained typesetting mistakes in the author information. The original article has been corrected. 相似文献