A timesaving, accurate method for locating and re-locating plants in ecological field studies

We present a method for increasing the accuracy and acquisition rate of the initial location data of plants within fixed areas. Using a personal digital assistant (PDA) to create a link between various electronic measurement devices (pantograph, micrometers etc.) and a database of the study individual's location information, has significantly increased measurement reliability and speed in a demographic field study. The method also provides a means to quickly and accurately re-identify the same individuals during subsequent visits to the study plot. Application of the same method can be used in all ecological field studies with sessile organisms in permanent plots, increasing speed and accuracy of coordinate measurement.     

Reactions of three bottlenose dolphin dams with calves to other members of the group in connection with nursing

The suckling behavior of three bottlenose dolphin (Tursiops truncatus) mother–calf pairs at the Kolmården Wild Animal Park, Sweden, was followed from birth until the calves were 1 year old, with emphasis on the behavior of the mothers toward other dolphins present in pool. The results show that 80.44% of the sucklings occurred when the dams were not accompanied by another member of the group. This preference declined, as the calf grew older, for all three dams. Three factors influenced this company preference in relation to nursing and contributed to the total variance in a detectable way: the month post partum, company preference, and the mother's ID, i.e., which mother was involved. The time between the category “dam leaves company” and the beginning of nursing increased over the months for all three dams. These results indicate that another dolphin is not automatically an asset to a dam with a newborn, and that, in human care, ample space and limited number of pool mates must be provided to allow the dam the necessary privacy in connection with nursing. Zoo Biol 0:1–13, 2005. © 2005 Wiley‐Liss, Inc.     

Molecular systematics and Holarctic phylogeography of cestodes of the genus Anoplocephaloides Baer, 1923 s. s. (Cyclophyllidea,Anoplocephalidae) in lemmings (Lemmus,Synaptomys)

The present molecular systematic and phylogeographic analysis is based on sequences of cytochrome c oxidase subunit 1 (cox1) (mtDNA) and 28S ribosomal DNA and includes 59 isolates of cestodes of the genus Anoplocephaloides Baer, 1923 s. s. (Cyclophyllidea, Anoplocephalidae) from arvicoline rodents (lemmings and voles) in the Holarctic region. The emphasis is on Anoplocephaloides lemmi (Rausch 1952) parasitizing Lemmus trimucronatus and Lemmus sibiricus in the northern parts of North America and Arctic coast of Siberia, and Anoplocephaloides kontrimavichusi (Rausch 1976) parasitizing Synaptomys borealis in Alaska and British Columbia. The cox1 data, 28S data and their concatenated data all suggest that A. lemmi and A. kontrimavichusi are both non‐monophyletic, each consisting of two separate, well‐defined clades, that is independent species. As an example, the sister group of the clade 1 of A. lemmi, evidently representing the ‘type clade’ of this species, is the clade 1 of A. kontrimavichusi. For A. kontrimavichusi, it is not known which one is the type clade. There is also fairly strong evidence for the non‐monophyly of Anoplocephaloides dentata (Galli‐Valerio, 1905)‐like species, although an earlier phylogeny suggested that this multispecies assemblage may be monophyletic. The results suggest a deep phylogenetic codivergence of Lemmus spp. and A. lemmi, primarily separating the two largely allopatric host and parasite species at the Kolyma River in east Siberia. There are also two allopatric sublineages within each main clade/species of A. lemmi and Lemmus, but the present distributions of the sublineages within the eastern L. trimucronatus and clade 1 of A. lemmi are not concordant. This discrepancy may be most parsimoniously explained by an extensive westward distributional shift of the easternmost parasite subclade. The results further suggest that the clade 1 of A. kontrimavichusi has diverged through a host shift from the precursor of L. trimucronatus to S. borealis.     

Sensitive detection of aggregated prion protein via proximity ligation

The DNA assisted solid-phase proximity ligation assay (SP-PLA) provides a unique opportunity to specifically detect prion protein (PrP) aggregates by investigating the collocation of 3 or more copies of the specific protein. We have developed an SP-PLA that can detect PrP aggregates in brain homogenates from infected hamsters even after a 10⁷-fold dilution. In contrast, brain homogenate from uninfected animals did not generate a detectable signal at 100-fold higher concentration. Using either of the 2 monoclonal anti-PrP antibodies, 3F4 and 6H4, we successfully detected low concentrations of aggregated PrP. The presented results provide a proof of concept that this method might be an interesting tool in the development of diagnostic approaches of prion diseases.     

Exploiting a window in time. Fate of recruiting populations of two rare fire-dependent Geranium species after forest fire

Fire ephemerals are few in the boreal forest despite a long history of recurrent fires, which suggests such a life-history pose problems here. We analysed the fate of recruiting populations of two rare and fire-dependent annual Geranium species at burnt forest sites in South-eastern Sweden, to extract vital information on their life-history. Seedlings emerged from the soil seed bank only in the year of fire but spread over several weeks. At sites that burnt early in the season, some seedlings exhibited a summer-annual life-cycle, but those were less successful than plants at the same sites that delayed reproduction until the following year (winter-annuals). Herbivory was frequent in the fire year and until the following spring, but later almost absent, and thus hit seed production in summer-annuals badly. Winter mortality was highly variable for rosette-stage winter-annuals, with some populations nearly obliterated. Reproductive success varied greatly between populations mainly due to pre-reproductive mortality, with a return of 0.2–395 (average 79) seeds per seedling. The vast majority of seeds (92–100 %) were produced by the primary generation, emerging from the seed bank. Out of this first seed crop, 0.2–2.5 % germinated within the study period, resulting in secondary generations. Plants in these later generations were small and produced few seeds, showing that the opportunity for high reproductive success is essentially restricted to one year only. This makes populations highly vulnerable to local near-complete reproductive failure due to winter mortality and herbivory and may be the ultimate reason why strict fire ephemerals are so few in northern forests.     

16S rRNA gene diversity of attached and unattached bacteria in boreholes along the access tunnel to the Äspö hard rock laboratory, Sweden

Abstract: A total of 155 16S rRNA genes that were cloned from unattached and attached bacteria in nine boreholes down to 626 m below ground were partially sequenced. Attached bacteria were examined with scanning electron microscopy (SEM). The distribution of the 16S rRNA genes found was related to the different types of groundwaters studied. Several of the sequences obtained could be identified on genus level as one of the genera Acinetobacter, Bacillus, Desulfovibrio or Thiomicrospira . The 16S rRNA genes from 20 selected isolates were closely related to the sulphate reducers Desulfomicrobium baculatum or Desulfovibrio sp., the iron reducer Shewanella putrefaciens , or distantly related to the Gram-positive genus Eubacterium . Viable counts confirmed the presence of sulphate-reducing bacteria.     

Novel synthetic co-culture of Acetobacterium woodii and Clostridium drakei using CO2 and in situ generated H2 for the production of caproic acid via lactic acid

Acetobacterium woodii is known to produce mainly acetate from CO₂ and H₂, but the production of higher value chemicals is desired for the bioeconomy. Using chain-elongating bacteria, synthetic co-cultures have the potential to produce longer-chained products such as caproic acid. In this study, we present first results for a successful autotrophic co-cultivation of A. woodii mutants and a Clostridium drakei wild-type strain in a stirred-tank bioreactor for the production of caproic acid from CO₂ and H₂ via the intermediate lactic acid. For autotrophic lactate production, a recombinant A. woodii strain with a deleted Lct-dehydrogenase complex, which is encoded by the lctBCD genes, and an inserted D-lactate dehydrogenase (LdhD) originating from Leuconostoc mesenteroides, was used. Hydrogen for the process was supplied using an All-in-One electrode for in situ water electrolysis. Lactate concentrations as high as 0.5 g L^–1 were achieved with the AiO-electrode, whereas 8.1 g L^–1 lactate were produced with direct H₂ sparging in a stirred-tank bioreactor. Hydrogen limitation was identified in the AiO process. However, with cathode surface area enlargement or numbering-up of the electrode and on-demand hydrogen generation, this process has great potential for a true carbon-negative production of value chemicals from CO₂.