The Entner–Doudoroff pathway empowers Pseudomonas putida KT2440 with a high tolerance to oxidative stress

Glucose catabolism of Pseudomonas putida is carried out exclusively through the Entner–Doudoroff (ED) pathway due to the absence of 6‐phosphofructokinase. In order to activate the Embden–Meyerhof–Parnas (EMP) route we transferred the pfkA gene from Escherichia coli to a P. putida wild‐type strain as well as to an eda mutant, i.e. lacking 2‐keto‐3‐deoxy‐6‐phosphogluconate aldolase. PfkA^{E. coli} failed to redirect the carbon flow from the ED route towards the EMP pathway, suggesting that ED was essential for sugar catabolism. The presence of PfkA^{E. coli} was detrimental for growth, which could be traced to the reduction of ATP and NAD(P)H pools along with alteration of the NAD(P)H/NADP⁺ ratio. Pseudomonas putida cells carrying PfkA^{E. coli} became highly sensitive to diamide and hydrogen peroxide, the response to which is very demanding of NADPH. The inhibitory effect of PfkA^{E. coli} could in part be relieved by methionine, the synthesis of which relies much on NADPH. These results expose the role of the ED pathway for generating the redox currency (NADPH) that is required for counteracting oxidative stress. It is thus likely that environmental bacteria that favour the ED pathway over the EMP pathway do so in order to gear their aerobic metabolism to endure oxidative‐related insults.     

pks+ Escherichia coli more prevalent in benign than malignant colorectal tumors

Molecular Biology Reports - Some E. coli strains that synthesize the toxin colibactin within the 54-kb pks island are being implicated in colorectal cancer (CRC) development. Here, the prevalence...     

"Canis" ferox Revisited: Diet Ecomorphology of Some Long Gone (Late Miocene and Pliocene) Fossil Dogs

Journal of Mammalian Evolution - The late Miocene was a period of great radiation for the subfamily Caninae in North America. During this time, the early taxa of the two tribes of this subfamily,...     

Publisher Correction: Risk screening of the potential invasiveness of non-native aquatic species in Vietnam

Biological Invasions - A correction to this paper has been published: https://doi.org/10.1007/s10530-021-02498-4     

Antarctica as a reservoir of planetary analogue environments

Extremophiles - One of the main objectives of astrobiological research is the investigation of the habitability of other planetary bodies. Since space exploration missions are expensive and require...     

Analysis of macrofungal communities reveals a complex reciprocal influence between Mediterranean montane calcareous grassland and surrounding forest habitats

Fungi are essential components of all terrestrial ecosystems. Despite the crucial ecological role of soil fungi in grasslands, knowledge about fungal community diversity and structure in Mediterranean meadow habitats is still fragmentary. We analyzed macrofungal communities in three geographically distinct Mediterranean montane calcareous grasslands and surrounding forests, by means of fruit body surveys. We investigated a number of biotic and abiotic factors influencing the studied fungal communities, including plant species composition. Out of 6365 fruit bodies, a total of 268 species belonging to 84 genera were found. In general, there was a significant correlation between plant species richness and fungal richness. Variation in vegetation and plant community structure accounted for approximately 20% of variance in fungal community structure. Tree and shrub vegetation played a dominant role in shaping the analyzed fungal communities, both in meadows and surrounding forests, with particular influence on ectomycorrhizal, litter, and lignicolous saprotrophic fungi. Fungal biodiversity in the studied meadows was increased by the presence of tree and shrub species from the adjacent forests, but was reduced by the increasing vegetation cover.     

An Exo2 derivative affects ER and Golgi morphology and vacuolar sorting in a tissue-specific manner in arabidopsis

We screened a panel of compounds derived from Exo2 - a drug that perturbs post-Golgi compartments and trafficking in mammalian cells - for their effect on the secretory pathway in Arabidopsis root epidermal cells. While Exo2 and most related compounds had no significant effect, one Exo2 derivative, named LG8, induced severe morphological alterations in both the Golgi (at high concentrations) and the endoplasmic reticulum (ER). LG8 causes the ER to form foci of interconnecting tubules, which at the ultrastructural level appear similar to those previously reported in Arabidopsis roots after treatment with the herbicide oryzalin. In cotyledonary leaves, LG8 causes redistribution of a trans Golgi network (TGN) marker to the vacuole. LG8 affects the anterograde secretory pathway by inducing secretion of vacuolar cargo and preventing the brassinosteroid receptor BRI1 from reaching the plasma membrane. Uptake and arrival at the TGN of the endocytic marker FM4-64 is not affected. Unlike the ADP ribosylation factor-GTP exchange factor (ARF-GEF) inhibitor brefeldin A (BFA), LG8 affects these post-Golgi events without causing the formation of BFA bodies. Up to concentrations of 50 μm, the effects of LG8 are reversible.     

Assessment of the range of attraction of pheromone traps to Agriotes lineatus and Agriotes obscurus

• 1 The range of attraction of YATLOR pheromone traps was studied to gain information on the number of traps needed for mass trapping of males of two Agriotes species.
• 2 Male click beetles of the species Agriotes lineatus (L.) and Agriotes obscurus (L.) (25–30 individuals per release point) were marked and released at a distance of 2, 5, 10, 15, 20 and 60 m from a pheromone trap both along and opposite to the known prevailing wind direction. Traps were regularly inspected over approximately 1 month. The percentage of recaptured beetles was calculated and analyzed using analysis of variance. Maximum sampling ranges and effective sampling areas were calculated.
• 3 Averaged over all five trials and distances, approximately 40% of the released beetles (A. lineatus and A. obscurus) were recaptured. The percentage recapture of male adults was significantly affected by release distance, whereas no differences were found for species and release direction.
• 4 Males were recaptured from all release points and the percentage recapture decreased (in part significantly) with increasing distance from 76% (2 m) to 35% (15 m) and 9% (60 m), respectively. Most of the beetles were recaptured within the first 3 days after release, independent of the distance, except 60 m. The effective sampling area for A. lineatus was 1089 m² after 12 days and increased to 1735 m² after 30 days. Corresponding values for A. obscurus were considerably higher: 1518 m² for 12 days and 2633 m² for 30 days.
• 5 We conclude that the range of attraction of the pheromone traps for A. lineatus and A. obscurus is comparatively low, providing high percentage recapture only for release distances up to 10 m. Accordingly, any approach targeted on preventing mating by male mass trapping would require a dense network of pheromone traps.