<Emphasis Type="Italic">TRAF1/C5</Emphasis>polymorphism is not associated with increased mortality in rheumatoid arthritis: two large longitudinal studies

Introduction  

Recently an association between a genetic variation in TRAF1/C5 and mortality from sepsis or cancer was found in rheumatoid arthritis (RA). The most prevalent cause of death, cardiovascular disease, may have been missed in that study, since patients were enrolled at an advanced disease stage. Therefore, we used an inception cohort of RA patients to investigate the association between TRAF1/C5 and cardiovascular mortality, and replicate the findings on all-cause mortality. As TRAF1/C5 associated mortality may not be restricted to RA, we also studied a large cohort of non-RA patients.     

Cloning and expression of variants of the glutaryl-7-aminocephalosporic acid acylase of the bacterium <Emphasis Type="Italic">Brevundimonas diminuta</Emphasis> in <Emphasis Type="Italic">Escherichia coli</Emphasis> cells

The gene coding for glutaryl-7-aminocephalosporic acid acylase (Gl7ACA acylase) of the bacterium Brevundimonas diminuta (BrdGl7ACA), a commercial enzyme widely used in modern biocatalytic technologies for manufacture of β-lactam antibiotics, was cloned. Efficient expression systems for producing a “native” recombinant BrdGl7ACA and its analogs modified by attaching affinity groups—the chitin-binding domain of chitinases A1 and hexahistidine sequence—were designed. It was demonstrated that both the recombinant hybrid proteins and the native Gl7ACA acylase produced in E. coli cells underwent a correct autoproteolytic processing with generation of functionally active enzymes and could be isolated with a high yield using one-step affinity chromatography.     

Itatodon tatarinovi (Tegotheriidae, Mammalia), a docodont from the Middle Jurassic of Western Siberia and phylogenetic analysis of Docodonta

Itatodon tatarinovi Lopatin et Averianov, 2005 is represented by two lower molars and a lower molar fragment from the upper part of the Itat Formation (Bathonian Stage) of the Berezovskii quarry (southern Krasnoyarsk Region). Based on the presence of a pseudotalonid, bordered by the crests a-b, b-e, e-g, and a-g, Itatodon is assigned to the endemic Asian family Tegotheriidae. In this genus, the crest a-b is reduced and the thick lingual cingulid is better developed than that of other docodonts. Phylogenetic analysis of Docodonta shows paraphyly of Morganucodonta relative to docodonts and independent development of the pseudotalonid in the Tegotheriidae and the clade comprising Krusatodon, Castorocauda, Cyrtlatherium, and Dsungarodon.     

New species of leaf beetles (Coleoptera, Chrysomelidae) from China: VI

Smaragdina schereri sp. n., Chrysolina jiangi sp. n., Ch. geae sp. n., Ch. gansuica sp. n., Sclerophaedon daccordii sp. n., Neophaedon sichuanicus sp. n., Oreomela inflata sp. n., Xingeina nigrolucens sp. n., Shaira hemipteroides sp. n. and Calomicrus atroviridis sp. n. from Sichuan, Gansu, and Yunnan provinces of China are described. Types of the new species are deposited in the Zoological Institute, Russian Academy of Sciences, St. Petersburg.     

The accuracy of several multiple sequence alignment programs for proteins

Background  

There have been many algorithms and software programs implemented for the inference of multiple sequence alignments of protein and DNA sequences. The "true" alignment is usually unknown due to the incomplete knowledge of the evolutionary history of the sequences, making it difficult to gauge the relative accuracy of the programs.     

On single and multiple models of protein families for the detection of remote sequence relationships

Background  

The detection of relationships between a protein sequence of unknown function and a sequence whose function has been characterised enables the transfer of functional annotation. However in many cases these relationships can not be identified easily from direct comparison of the two sequences. Methods which compare sequence profiles have been shown to improve the detection of these remote sequence relationships. However, the best method for building a profile of a known set of sequences has not been established. Here we examine how the type of profile built affects its performance, both in detecting remote homologs and in the resulting alignment accuracy. In particular, we consider whether it is better to model a protein superfamily using a single structure-based alignment that is representative of all known cases of the superfamily, or to use multiple sequence-based profiles each representing an individual member of the superfamily.     

A novel surface protein of Trichomonas vaginalis is regulated independently by low iron and contact with vaginal epithelial cells

Background  

Trichomonosis caused by Trichomonas vaginalis is the number one, non-viral sexually transmitted disease (STD) that affects more than 250 million people worldwide. Immunoglobulin A (IgA) has been implicated in resistance to mucosal infections by pathogens. No reports are available of IgA-reactive proteins and the role, if any, of this class of antibody in the control of this STD. The availability of an IgA monoclonal antibody (mAb) immunoreactive to trichomonads by whole cell (WC)-ELISA prompted us to characterize the IgA-reactive protein of T. vaginalis.     

Cellular localization of a Hsp90 homologue in Porphyromonas gingivalis

We previously reported an association between elevated serum antibody titers to the 90-kDa human heat shock protein (Hsp90), periodontal health and colonization by Porphyromonas gingivalis. In this study, we examined the cellular localization of the Hsp90 homologue of P. gingivalis. Cultures of P. gingivalis were heat-stressed (45 degrees C) and examined for localization of the Hsp90 homologue. Heat stress induced a 4-5-fold increase in anti-Hsp90 antibody reactivity over that of the unstressed controls. Western blot analysis revealed two bands (44 and 68 kDa) that reacted with anti-Hsp90 antibodies. The 68-kDa band was heat-inducible, while the 44-kDa band was not. Immunogold staining revealed that the Hsp90 homologue localized principally to the membrane and extracellular vesicles. Subcellular fractionation confirmed that the Hsp90 homologue was primarily membrane-associated.