A new nitrilase from Bradyrhizobium japonicum USDA 110. Gene cloning, biochemical characterization and substrate specificity

A nitrilase gene blr3397 from Bradyrhizobium japonicum USDA110 was cloned and over-expressed in Escherichia coli, and the encoded protein was purified to give a nitrilase with a single band of about 34.5kD on SDS-PAGE. The molecular weight of the holoenzyme was about 340kD as determined by light scattering analysis, suggesting that nitrilase blr3397 self-aggregated to an active form with the native structure being a decamer. The V(max) and K(m) for phenylacetonitrile were 3.15U/mg and 4.36mM, respectively. The catalytic constant k(cat) and specificity constant k(cat)/K(m) were 111min(-1) and 2.6x10(4)min(-1)M(-1). This nitrilase is most active toward the hydrolysis of hydrocinnamonitrile among the tested substrates (4.3 times that of phenylacetonitrile). The nitrilase blr3397 shows higher activity towards the hydrolysis of aliphatic nitriles than that for the aromatic counterparts, and can be characterized as an aliphatic nitrilase in terms of activity. This nitrilase also possesses distinct features from the nitrilase bll6402 of the same microbe.     

Physical interactions facilitate sex change in the protogynous orange-spotted grouper,Epinephelus coioides

Sex change in teleost fishes is commonly regulated by social factors. In species that exhibit protogynous sex change, such as the orange-spotted grouper Epinephelus coioides, when the dominant males are removed from the social group, the most dominant female initiates sex change. The aim of this study was to determine the regulatory mechanisms of socially controlled sex change in E. coioides. We investigated the seasonal variation in social behaviours and sex change throughout the reproductive cycle of E. coioides, and defined the behaviour pattern of this fish during the establishment of a dominance hierarchy. The social behaviours and sex change in this fish were affected by season, and only occurred during the prebreeding season and breeding season. Therefore, a series of sensory isolation experiments was conducted during the breeding season to determine the role of physical, visual and olfactory cues in mediating socially controlled sex change. The results demonstrated that physical interactions between individuals in the social groups were crucial for the initiation and completion of sex change, whereas visual and olfactory cues alone were insufficient in stimulating sex change in dominant females. In addition, we propose that the steroid hormones 11-ketotestosterone and cortisol are involved in regulating the initiation of socially controlled sex change.     

SHORT-ROOT 1 is critical to cell division and tracheary element development in rice roots

The exocyst is a key factor in vesicle transport and is involved in cell secretion, cell growth, cell division and other cytological processes in eukaryotes. EXO70 is the key exocyst subunit. We obtained a gene, SHORT-ROOT 1 (SR1), through map-based cloning and genetic complementation. SR1 is a conserved protein with an EXO70 domain in plants. SR1 mutation affected the whole root-development process: producing shorter radicles, adventitious roots and lateral roots, and demonstrating abnormal xylem development, resulting in dwarfing and reduced water potential and moisture content. SR1 was largely expressed in the roots, but only in developing root meristems and tracheary elements. The shortness of the sr1 mutant roots was caused by the presence of fewer meristem cells. The in situ histone H4 expression patterns confirmed that cell proliferation during root development was impaired. Tracheary element dysplasia was caused by marked decreases in the inner diameters of and distances between the perforations of adjacent tracheary elements. The membrane transport of sr1 mutants was blocked, affecting cell division in the root apical region and the development of root tracheary elements. The study of SR1 will deepen our understanding of the function of EXO70 genes in Oryza sativa (rice) and guide future studies on the molecular mechanisms involved in plant root development.     

Degradation of WTAP blocks antiviral responses by reducing the m6A levels of IRF3 and IFNAR1 mRNA

N ⁶‐methyladenosine (m⁶A) is a chemical modification present in multiple RNA species and is most abundant in mRNAs. Studies on m⁶A reveal its comprehensive roles in almost every aspect of mRNA metabolism, as well as in a variety of physiological processes. Although some recent discoveries indicate that m⁶A can affect the life cycles of numerous viruses as well as the cellular antiviral immune response, the roles of m⁶A modification in type I interferon (IFN‐I) signaling are still largely unknown. Here, we reveal that WT1‐associated protein (WTAP), one of the m⁶A “writers”, is degraded via the ubiquitination‐proteasome pathway upon activation of IFN‐I signaling. With the degradation of WTAP, the m⁶A levels of IFN‐regulatory factor 3 (IRF3) and interferon alpha/beta receptor subunit 1 (IFNAR1) mRNAs are reduced, leading to translational suppression of IRF3 and instability of IFNAR1 mRNA. Thus, the WTAP‐IRF3/IFNAR1 axis may serve as negative feedback pathway to fine‐tune the activation of IFN‐I signaling, which highlights the roles of m⁶A in the antiviral response by dictating the fate of mRNAs associated with IFN‐I signaling.     

青霉素钠对萼花臂尾轮虫适合度的促进作用及其与藻密度的关系

以萼花臂尾轮虫（Brachionus calyciflorus）为受试动物,在1.0×10⁶（较低）、2.0×10⁶（中等）和4.0×10⁶个细胞/mL （较高）的斜生栅藻（Scenedesmus obliquus）密度下,研究了不同浓度（0、200、400、600、800和1000 μg/L）的青霉素钠对轮虫各生命表统计学参数的影响。结果表明,与各藻密度下的对照组相比,当藻密度为2.0×10⁶个细胞/mL时,200-1000 μg/L的青霉素钠处理组中轮虫的生命期望和世代时间分别延长了40.67%-70.67%和34.04%-50.23%（P<0.05）,净生殖率和内禀增长率分别提高了204.35%-358.70%和36.26%-62.09%（P<0.05）;藻密度的降低或升高均显著降低青霉素钠对轮虫存活、生殖和种群增长的促进幅度。1.0×10⁶ 个细胞/mL的斜生栅藻密度下,400 μg/L的青霉素钠处理组中轮虫的生命期望延长了21%（P<0.05）,200-400μg/L的青霉素钠处理组中轮虫的世代时间延长了23.15%-33.13%（P<0.05）,200-600和1000 μg/L的青霉素钠处理组中轮虫的净生殖率分别升高了40%-81.05%和41.05%（P<0.05）;但4.0×10⁶个细胞/mL的斜生栅藻密度下,各青霉素钠处理组中轮虫的所有生命表统计学参数均与对照组之间无显著性差异（P>0.05）。藻密度对轮虫的生命期望、净生殖率、内禀增长率和后代混交率均具有显著性影响（P<0.01）,青霉素钠浓度对轮虫的世代时间、净生殖率和内禀增长率均具有显著性影响（P<0.05）,藻密度和青霉素钠浓度的交互作用对轮虫的生命期望、净生殖率和内禀增长率也具有显著性影响（P<0.05）。在实验设置的青霉素钠浓度范围内,1.0×10⁶个细胞/mL藻密度下轮虫的生命期望、世代时间和净生殖率与青霉素钠浓度之间均具有显著的剂量-效应关系（P<0.05）;2.0×10⁶个细胞/mL藻密度下,轮虫的生命期望、世代时间和内禀增长率与青霉素钠浓度之间均具有显著的剂量-效应关系（P<0.05）。本研究结果提示,环境相关浓度的青霉素钠不会对萼花臂尾轮虫的存活、生殖和种群增长产生显著性影响。     

外周伤害性刺激诱导大鼠脑干内延髓网状背侧亚核传入投射神经元的c-fos表达

用荧光金逆行追踪和 FOS荧光免疫组织化学染色相结合的方法对外周伤害性刺激下大鼠脑干内向延髓网状背侧亚核传入投射的神经元中 c- fos的表达进行了研究。在麻醉状况下将 0 .15 μl2 %荧光金注入大鼠单侧延髓网状背侧亚核 ,存活5 d后用 1%福尔马林刺激同侧前爪、后爪和口周 ,2 h后灌注取材 ,再行 FOS免疫荧光标记。结果发现在脑的中脑导水管周围灰质、中缝背核、线形核和中缝大核内观察到荧光金标记细胞、FOS样免疫阳性反应细胞及荧光金 / FOS双标细胞。在这四个核团中 ,双标细胞数分别占荧光金逆标神经元数的 2 5 % (中脑导水管周围灰质 )、 11.7% (中缝背核 )、 8.9% (线形核 )和 12 .1% (中缝大核 )。结果提示在脑干向延髓网状背侧亚核投射的神经元中 ,有一部分与外周伤害性刺激信息的调控有关 ,还有的神经元可能具有其它的功能。     

氨基酸对于Monascus ruber生物合成Monacolin K影响的研究

在Monacolin K发酵中添加氨基酸后发现较高质量浓度的氨基酸高度抑制了Monacolin K的产量。0.1 g.L-1的D-甲硫氨酸在发酵第4 d添加可以提高产量30%以上,而L-甲硫氨酸则没有此功能,D,L-甲硫氨酸因D-甲硫氨酸的关系也有一定的增产效果。以甲硫氨酸代替蛋白胨作为主要氮源,则抑制了polyketide途径的前期步骤,因此严重抑制了色素及Monacolin K的生产。另外,发现1 g.L-1的L-苯丙氨酸的添加时间越早越有利于Monacolin K的生产,在起始时添加发酵单位可达135.9 mg.L-1,可能是因为L-苯丙氨酸经过脱氨后,可以进入polyketide途径从而促进了Monacolin K的生产。     

绿盖粉孢牛肝菌中一个新的甾体糖苷

从绿盖粉孢牛肝菌（Tylopilus virens）中分离得到一个新的麦角甾烷型甾体糖苷,其化学结构通过波谱学方法鉴定为：（22E,24R）-麦角甾-7,22-二烯-5α,6β-二醇-3β-O-[3-（3-苯基丙酰氧基）]-β-D-葡萄吡喃糖苷,命名为tylopiloside（1）,同时,其苷元cerevisterol（2）也从该菌中分离得到。值得注意的是,这种糖片段上有芳环取代的烷酰氧基基团的麦角甾烷型甾体糖苷为真菌中首次报道。     

SPINDLY 与赤霉素的信号转导

SPINDLY(SPY)作为一负调节子参与GA的信号转导,34肽重复结构(TPR)与C-端区域对其正常功能都十分重要。SPY基因在植物中呈组成型表达,其蛋白主要出现在细胞核部位。SPY蛋白与动物中的氧连N-乙酰葡萄糖胺转移酶(OGT)具有广泛的同源性,两者可能有着类似的作用机制。本文主要介绍GA突变体、SPY基因、SPY蛋白及其在大麦中的同源物HvSPY的结构与功能相关方面的一些研究进展。     

TNFα-initiated oxidative/nitrative stress mediates cardiomyocyte apoptosis in traumatic animals

Whole body non-penetrating trauma causes myocardial infarction in humans and mechanical trauma (MT) results in cardiac dysfunction in animals. Our recent study demonstrated that incubation of cardiomyocytes with plasma isolated from MT animals causes significant cardiomyocyte apoptosis that can be blocked by neutralization of TNFα. The present study attempted to obtain direct in vivo evidence to support that overproduction of TNFα plays a causative role in trauma-induced cardiomyocyte apoptosis. Non-lethal MT caused significant TNFα overproduction (2.4-fold at 1.5 h after MT) and increased cardiomyocyte apoptosis (starting 3 h and peaking 12 h after MT). Pharmacological inhibition of TNFα with etanercept or TNFα gene deletion reduced post-trauma myocyte apoptosis (P < 0.01). Expression of iNOS and NADPH oxidase, overproduction of NO and , and excessive protein nitration in the MT heart were all significantly reduced in etanercept-treated or TNFα^−/− mice, suggesting that oxidative/nitrative stress may contribute to TNFα-initiated myocyte apoptosis in MT hearts. Additional experiments demonstrated that inhibiting iNOS (1400W) or NADPH oxidase (apocynin), or scavenging peroxynitrite (FP15) significantly reduced myocyte apoptosis in MT animals (P < 0.01). Collectively, these data demonstrated that non-lethal mechanical trauma caused significant TNFα production that in turn stimulated myocardial apoptosis via oxidative/nitrative stress.