Identifying essential genes in bacterial metabolic networks with machine learning methods

Background  

Identifying essential genes in bacteria supports to identify potential drug targets and an understanding of minimal requirements for a synthetic cell. However, experimentally assaying the essentiality of their coding genes is resource intensive and not feasible for all bacterial organisms, in particular if they are infective.     

Reproductive life history of ocelotsLeopardus pardalis in southern Texas

The ocelotLeopardus pardalis Linnaeus, 1758 is an endangered felid in the United States currently restricted to southern Texas. The objectives of our study were to obtain data on ocelot parturition dates, fecundity, sex ratios, den characteristics, and first year survival, all of which are critical in development of population viability models. Sixteen parturition events were recorded ranging from mid-April to late December for 12 wild ocelots. Cumulatively, litters consisted of 1 or 2 kittens (ˉ = 1.2 ± 0.44 SD). Cumulative sex ratio was 1∶2.5 (male:female); however, there was no significant difference between the observed sex ratio and a 1∶1 sex ratio. Ten den sites were in close proximity (≤ 10 m) to dense thornshrub. Adult female ocelots used 2 to 4 den sites for each litter with distance between consecutively occupied dens ranging from 110 to 280 m (ˉ = 158 m ± 93 SD). An estimated annual survival for ocelots 0 to 1 year of age was 0.68. Evidence suggests that ocelots in the wild may breed more frequently than had been previously hypothesized.     

Comparative analysis of the cattle and human genomes: detection of ZOO-FISH and gene mapping-based chromosomal homologies

Comparative chromosome painting with individual human chromosome-specific libraries (CSLs) on cattle metaphase chromosomes delineated 46 homologous chromosomal segments between the two species. Continuous arrangement of these segments on individual cattle chromosomes demonstrates a nearly complete coverage of the bovine karyotype and shows physical boundaries of bovine chromosomal segments homologous to individual human chromosomes. Alignment of the available comparative gene mapping data with the homologous segments strongly supports the detected gross homologies between the karyotypes of the two species. In addition to cattle, four human CSLs were hybridized to sheep metaphase chromosomes also, to further verify the known karyotype homology within the Bovidae. Besides its application to karyotype evolution research, the comparative knowledge provides for rapid expansion of the much needed Type I locus-based bovine gene map. Received: 9 September 1995 / Accepted: 4 December 1995     

A comparative study on the antioxidant effects of hesperidin and ellagic acid against skeletal muscle ischemia/reperfusion injury

Abstract

The antioxidant effects of ellagic acid (EA) and hesperidin (HES) against skeletal muscle ischemia/reperfusion injury (I/R) were performed. Hindlimb ischemia has been induced by tourniquet occlusion for 2?h on left hindlimb. At the end of ischemia, the tourniquate has been removed and initiated reperfusion for 2?h. EA (100?mg/kg) has been applied orally before ischemia/reperfusion in the EA?+?I/R group. HES (100?mg/kg) has been given orally in the HES?+?I/R group. The left gastrocnemius muscle has been harvested and stored immediately at??80?°C until assessed for the levels of MDA and antioxidant enzymes activities. MDA level has statistically increased in I/R group (p?<?0.05) compared to other groups. The muscle tissue antioxidant enzymes activities were lower than the other groups in the I/R group (p?<?0.05). EA and HES treatments significantly reversed the damage level in I/R, also activity of tissue SOD increased in the EA?+?I/R and HES?+?I/R groups.