Effect of mechanical damage on emission of volatile organic compounds from plant leaves and implications for evaluation of host plant specificity of prospective biological control agents of weeds

Assessment of host plant specificity is a critical step in the evaluation of classical biological control agents of weeds which is necessary for avoiding possible damage to non-target plants. Volatile organic compounds (VOCs) emitted by plants likely play an important role in determining which plants attract and are accepted by a prospective arthropod agent. However, current methods to evaluate host plant specificity usually rely on empirical choice and no-choice behavioural experiments, with little knowledge about what chemical or physical attributes are stimulating the insect. We conducted experiments to measure the quantitative and qualitative effects on emission of VOCs caused by simple mechanical damage to leaves of plants known to differ in suitability and attractiveness to a prospective agent. More VOCs were detected from damaged than from undamaged leaves for all three species tested. Discriminant analysis was able to correctly distinguish the taxonomic identity of all plants based on their VOC profiles; however, the VOCs that discriminated species among undamaged leaves were completely different from those that discriminated among damaged leaves. Thus, damaged and undamaged plants present different VOC profiles to insects, which should be considered when conducting host plant specificity experiments. An unacceptable non-target plant, Centaurea cineraria, emitted all except one of the VOCs that were emitted by its preferred host plant, Centaurea solstitialis, indicating the importance of compounds that are repellant in host plant specificity. Centaurea cyanus emitted fewer VOCs than C. solstitialis, which suggests that it lacked some VOCs important for host plant recognition.     

Traces and related chemical changes in a Late Ordovician paleosol,Glossifungites ichnofacies,southern Appalachians,USA

Traces interpreted as Skolithos sp. in a Glossifungites ichnofacies occur in the upper part of the Beans Gap Claystone paleosol, in association with a Late Ordovician marine erosional surface. Paleosol color and whole‐rock chemistry are distinctly different in the vicinity of burrows, which are enveloped by olive gray mottles, 1 to 10 cm in diameter, in which total iron (measured as Fe₂O₃) is 30% lower than in grayish red, “unaltered”; claystone.

Post‐pedogenic bioturbation increased permeability locally and permitted the introduction of marine fluids and coarser sediment into the top of the paleosol. Anaerobic microbial decay of organic matter in the burrows and surrounding claystone permitted reduction (and mobilization) of formerly oxidized iron, which then combined with marine‐derived sulfate to form pyrite, both within burrows and along oxidation‐reduction fronts in the claystone proximal to burrows. Pyrite was later converted to hematite as a result of outcrop‐related oxidation by meteoric water.

Paleosols formed in coastal marine settings are especially susceptible to early diagenetic alteration related to marine hydromorphism. Differentiating these ichnologic and diagenetic effects from true pedogenic ones is essential when interpreting paleosols in paralic sequences.     

Isolation of Murine Valve Endothelial Cells

Normal valve structures consist of stratified layers of specialized extracellular matrix (ECM) interspersed with valve interstitial cells (VICs) and surrounded by a monolayer of valve endothelial cells (VECs). VECs play essential roles in establishing the valve structures during embryonic development, and are important for maintaining life-long valve integrity and function. In contrast to a continuous endothelium over the surface of healthy valve leaflets, VEC disruption is commonly observed in malfunctioning valves and is associated with pathological processes that promote valve disease and dysfunction. Despite the clinical relevance, focused studies determining the contribution of VECs to development and disease processes are limited. The isolation of VECs from animal models would allow for cell-specific experimentation. VECs have been isolated from large animal adult models but due to their small population size, fragileness, and lack of specific markers, no reports of VEC isolations in embryos or adult small animal models have been reported. Here we describe a novel method that allows for the direct isolation of VECs from mice at embryonic and adult stages. Utilizing the Tie2-GFP reporter model that labels all endothelial cells with Green Fluorescent Protein (GFP), we have been successful in isolating GFP-positive (and negative) cells from the semilunar and atrioventricular valve regions using fluorescence activated cell sorting (FACS). Isolated GFP-positive VECs are enriched for endothelial markers, including CD31 and von Willebrand Factor (vWF), and retain endothelial cell expression when cultured; while, GFP-negative cells exhibit molecular profiles and cell shapes consistent with VIC phenotypes. The ability to isolate embryonic and adult murine VECs allows for previously unattainable molecular and functional studies to be carried out on a specific valve cell population, which will greatly improve our understanding of valve development and disease mechanisms.     

Will climate warming exceed lethal photosynthetic temperature thresholds of lichens in a southern African arid region?

Predicted elevated temperatures and a shift from a winter to summer rainfall pattern associated with global warming could result in the exposure of hydrated lichens during summer to more numerous temperature extremes that exceed their thermal thresholds. This hypothesis was tested by measuring lethal temperature thresholds under laboratory and natural conditions for four epilithic lichen species (Xanthoparmelia austro‐africana, X. hyporhytida, Xanthoparmelia sp., Xanthomaculina hottentotta) occurring on quartz gravel substrates at a hot arid inland site two epigeous lichen species (Teloschistes capensis, Ramalina sp.) occurring on gypsum‐rich topsoil at a warm humid coastal site. Extrapolated lethal temperatures for photosynthetic quantum yield under laboratory conditions were up to 4°C higher for lichens from a dry inland site than those from a humid coastal site. Lethal temperatures extrapolated for photosynthetic quantum yield at a saturating photosynthetic photon flux density of ≥11,000 μmol photons m^?2 s^?1 under natural conditions were up to 6°C higher for lichens from the dry inland site than the more humid coastal site. It is concluded that only under atypical conditions of lichen exposure in a hydrated state to temperature extremes at high midday solar irradiances during summer could lethal photosynthetic thresholds in sensitive lichen species be potentially exceeded, but whether the increased frequency of such conditions with climate warming would lead to increased likelihood of lichen mortality is debatable.     

A standard variation file format for human genome sequences

Here we describe the Genome Variation Format (GVF) and the 10Gen dataset. GVF, an extension of Generic Feature Format version 3 (GFF3), is a simple tab-delimited format for DNA variant files, which uses Sequence Ontology to describe genome variation data. The 10Gen dataset, ten human genomes in GVF format, is freely available for community analysis from the Sequence Ontology website and from an Amazon elastic block storage (EBS) snapshot for use in Amazon's EC2 cloud computing environment.     

Membrane interactions of cell-penetrating peptides probed by tryptophan fluorescence and dichroism techniques: correlations of structure to cellular uptake

This work reports on the binding and conformation of a series of CPPs in the bilayer membranes of large unilamellar vesicles and the effect of the presence of cholesterol. We show a negative correlation between alpha-helical structure and uptake efficiency for penetratin peptides where the two central arginine residues of penetratin are thought to be important for breaking the secondary structure. Penetratin alpha-helicity is also reduced upon incorporation of cholesterol into the membrane. Flow linear dichroism in the far-UV region shows that the penetratin peptides adopt a preferential orientation of the alpha-helix parallel to the bilayer, and the linear dichroism (LD) spectrum in the aromatic region indicates that the tryptophan residues are preferentially oriented parallel to the membrane. The Tat analogue TatP59W and the oligoarginine R7W, which are more efficient CPPs than penetratin, bind to membranes as random coils and do not show any orientation in LD, again indicating that alpha-helicity reduces uptake efficiency. Further, we observe large variations in tryptophan quantum yields for the five CPPs in this study and discuss this in terms of the ability to cause lipid rearrangement. Binding isotherms show that cholesterol increases the affinity of the peptide for the membrane, but tryptophan fluorescence lifetimes are essentially unaltered by incorporation of as much as 40 mol % cholesterol into the membrane, suggesting the absence of specific peptide-cholesterol interactions. Fluorescence emission maxima are insensitive to cholesterol and indicate that the peptide is positioned in the headgroup region. The results on peptide-membrane interactions are discussed in terms of possible uptake mechanisms.     

A role for plant natriuretic peptide immuno-analogues in NaCl- and drought-stress responses

Higher plants contain biologically active molecules that are recognized by anti-human atrial natriuretic polypeptide rabbit serum (anti-ANP). These molecules are termed immunoreactant plant natriuretic peptides (irPNPs) and have previously been shown to be associated with conductive tissue and to affect ion fluxes, protoplast volume regulation and stomatal guard cell responses. Herein an irPNP from the brassicaceus weed Erucastrum strigosum is identified and it is demonstrated that the relative amounts of irPNP expressed as a percentage of total water : methanol (50 : 50) extracted proteins are increased when plants are exposed to 300 m M NaCl. Since 100 and 200 m M NaCl reduce dry and fresh mass as well as increase total tissue NaCl load, it is hypothesized that irPNP up-regulation is a late and possibly adaptive response. IrPNP is also significantly up-regulated in Arabidopsis thaliana suspension culture cells in response to 150 m M NaCl and even more so in response to iso-osmolar amounts of sorbitol. Finally, a recombinant A. thaliana irPNP (AtPNP-A) promotes net water-uptake into the protoplast and thus volume increases. This response is dependent on de novo protein synthesis and may suggest a complex and possibly regulatory function for irPNP-like molecules in plant homeostasis.     

Diastereomeric preference in 1,4,7-tris((S)-2-hydroxy-3-phenylpropyl)-1,4,7-triazacyclononanelithium(I) and its sodium(I) analogue

In N,N-dimethylformamide (DMF), 1,4,7-tris((S)-2-hydroxy-3-phenylpropyl)-1,4,7-triazacyclononane forms metal complexes, [M(S-thppc9)]⁺, for which log K (dm³ mol⁻¹)=3.01, 2.65, 2.66, 2.65, 2.42 and 7.59 (all±0.05) where M⁺=Li⁺, Na⁺, K⁺, Rb⁺, Cs⁺ and Ag⁺, respectively. Variable temperature ¹³C{¹H} NMR spectroscopy shows that the interchange between equivalent forms of a single diastereomer occurs for [Li(S-thppc9)]⁺ and [Na(S-thppc9)]⁺ characterised by: k=43±5 and 2900±100 s⁻¹, at 298.2 K, ΔH^‡=22.5±1.6 and 33.8±1.6 kJ mol⁻¹, and ΔS^‡=−133±5 and −59±6 J K⁻¹ mol⁻¹, respectively. Gas phase ab initio modelling shows these complexes and their K⁺ analogue to preferentially form distorted trigonal prismatic Λ, Δ, and Λ diastereomers, respectively.     

Alexandrium camurascutulum sp. nov. (Dinophyceae): a new dinoflagellate species from New Zealand

A new species, Alexandrium camurascutulum sp. nov. MacKenzie et Todd, is described from specimens collected from Tasman Bay and the Marlborough Sounds New Zealand. These small (26–28 μm long × 21–24 μm wide) cells can be discriminated from other species in the Alexandrium minutum group by three distinctive morphological features. The sixth pre-cingular plate (6′′) is up to 1.6 times wider than high and the left side of the plate is concave resulting in a markedly ‘hooked’ appearance. In all specimens observed, the first apical plate (1′) does not directly connect with the apical pore plate (Po) and the posterior sulcal plate (S.p.) is markedly different from the usual A. minutum form and may contain a posterior attachment pore (pap) connected to the right side plate margin. The cells may or may not have an anterior attachment pore (aap) in the apical pore plate (Po). The cells display a prominent list along the left sulcal margin and the thecal surface is perforated with numerous areolated pores. A. camurascutulum sp. nov. has been observed occasionally over a number of years in coastal waters of the northern South Island of New Zealand. There is circumstantial evidence that suggests it is not toxic.