Improving Phenotypic Prediction by Combining Genetic and Epigenetic Associations

We tested whether DNA-methylation profiles account for inter-individual variation in body mass index (BMI) and height and whether they predict these phenotypes over and above genetic factors. Genetic predictors were derived from published summary results from the largest genome-wide association studies on BMI (n ∼ 350,000) and height (n ∼ 250,000) to date. We derived methylation predictors by estimating probe-trait effects in discovery samples and tested them in external samples. Methylation profiles associated with BMI in older individuals from the Lothian Birth Cohorts (LBCs, n = 1,366) explained 4.9% of the variation in BMI in Dutch adults from the LifeLines DEEP study (n = 750) but did not account for any BMI variation in adolescents from the Brisbane Systems Genetic Study (BSGS, n = 403). Methylation profiles based on the Dutch sample explained 4.9% and 3.6% of the variation in BMI in the LBCs and BSGS, respectively. Methylation profiles predicted BMI independently of genetic profiles in an additive manner: 7%, 8%, and 14% of variance of BMI in the LBCs were explained by the methylation predictor, the genetic predictor, and a model containing both, respectively. The corresponding percentages for LifeLines DEEP were 5%, 9%, and 13%, respectively, suggesting that the methylation profiles represent environmental effects. The differential effects of the BMI methylation profiles by age support previous observations of age modulation of genetic contributions. In contrast, methylation profiles accounted for almost no variation in height, consistent with a mainly genetic contribution to inter-individual variation. The BMI results suggest that combining genetic and epigenetic information might have greater utility for complex-trait prediction.     

Epidermal fatty acid‐binding protein protects nerve growth factor‐differentiated PC12 cells from lipotoxic injury

Epidermal fatty acid‐binding protein (E‐FABP/FABP5/DA11) binds and transport long‐chain fatty acids in the cytoplasm and may play a protecting role during neuronal injury. We examined whether E‐FABP protects nerve growth factor‐differentiated PC12 cells (NGFDPC12 cells) from lipotoxic injury observed after palmitic acid (C16:0; PAM) overload. NGFDPC12 cells cultures treated with PAM/bovine serum albumin at 0.3 mM/0.15 mM show PAM‐induced lipotoxicity (PAM‐LTx) and apoptosis. The apoptosis was preceded by a cellular accumulation of reactive oxygen species (ROS) and higher levels of E‐FABP. Antioxidants MCI‐186 and N‐acetyl cysteine prevented E‐FABP's induction in expression by PAM‐LTx, while tert‐butyl hydroperoxide increased ROS and E‐FABP expression. Non‐metabolized methyl ester of PAM, methyl palmitic acid (mPAM), failed to increase cellular ROS, E‐FABP gene expression, or trigger apoptosis. Treatment of NGFDPC12 cultures with siE‐FABP showed reduced E‐FABP levels correlating with higher accumulation of ROS and cell death after exposure to PAM. In contrast, increasing E‐FABP cellular levels by pre‐loading the cells with recombinant E‐FABP diminished the PAM‐induced ROS and cell death. Finally, agonists for PPARβ (GW0742) or PPARγ (GW1929) increased E‐FABP expression and enhanced the resistance of NGFDPC12 cells to PAM‐LTx. We conclude that E‐FABP protects NGFDPC12 cells from lipotoxic injury through mechanisms that involve reduction of ROS.

     

小球藻高附加值生物活性物质“小球藻热水提取物”的研究现状与展望

小球藻是一种食用历史久、营养丰富的微藻功能食品,其中蛋白核小球藻已于2012年被我国批准为新资源食品,并成为国内外正在大力发展与培育的微藻能源及微藻固碳这一战略性新兴产业的主要藻种之一。在积累油脂的同时,小球藻自身还能合成高附加值生物活性物质,其合理利用可平衡微藻能源的高成本。小球藻热水提取物(CE),即商业上宣称的"小球藻生长因子(CGF)",是小球藻有别于其他微藻的主要生物活性物质,在促进生长、调节免疫等方面具有良好功效,且市场售价高。但迄今,有关CE的认识尚不清晰,尚未见CE方面的系统评述。本文对近年来CE的活性研究状况进行了系统的文献调查与梳理,综述了CE在增强免疫、抑制肿瘤、改善代谢综合征、清除自由基、抵御紫外损伤、螯合重金属以及保肝护肠等多个方面的功效,并分析了CE活性研究中存在的问题及CE的发展前景。     

Heterologous expression of an endo-β-1,4-glucanase gene from the anaerobic fungus <Emphasis Type="Italic">Orpinomyces</Emphasis> PC-2 in <Emphasis Type="Italic">Trichoderma reesei</Emphasis>

The codon modified neutral endo-β-1,4-glucanase gene celEn, originating from the anaerobic fungus Orpinomyces sp. strain PC-2, was inserted between the strong promoter Pcel7A and the terminator Tcel7A from Trichoderma reesei. The resulting expression cassette was ligated to the pCAMBIA1300 Agrobacterium binary vector to construct pCB-hE that also contains a hygromycin B resistance marker. pCB-hE was introduced into T. reesei ZU-02 through an Agrobacterium tumefaciens–mediated transformation procedure that has been modified with an improved transformation efficiency of 12,500 transformants per 10⁷ conidia. Stable integration of the celEn gene into the chromosomal DNA of T. reesei ZU-02 was confirmed by PCR. After 48 h fermentation in shaking flasks, the endo-β-1,4-glucanase activities increased to 55–70 IU ml⁻¹ in transgenic strains, which were about 6–7 times higher than that of the original ZU-02 strain (9.5 IU ml⁻¹). When the avicel was added in fermentation medium, the endo-β-1,4-glucanase activity in the transgenic strains could be further increased to 193.6 IU ml⁻¹ after 84 h fermentation. Transgenic T. reesei strains with high neutral endo-β-1,4-glucanase activity will be particularly suitable for certain applications in textile industry. The improved procedures for overproduction and secretion of heterologous proteins in transgenic T. reesei can also be used to generate similar recombinant proteins for research or industrial purposes.     

Comparison of covalent immobilization of amylase on polystyrene pellets with pentaethylenehexamine and pentaethylene glycol spacers

α-Amylase from Aspergillus oryzae was covalently immobilized onto polystyrene pellets with pentaethylenehexamine (PS-PEHA-Ald) and pentaethylene glycol (PS-PG-Ald) carrying a terminal aldehyde group. Optimum immobilization occured at pH 8.0 and 25 °C, and at pH 7.0 and 35 °C for PS-PEHA-Ald and PS-PG-Ald, respectively. PS-PEHA-Ald immobilized enzyme retained approximately 75% of the initial activity over 45 days of storage, 70% of the initial activity after nine runs of recycling and displayed the better resistance to detrimental metal ions. PS-PG-Ald immobilized enzyme retained approximately 50% of the initial activity in 8h at 70 °C. The catalytic efficiencies of PS-PEHA-Ald immobilized and PS-PG-Ald immobilized amylase were 1.42 and 1.29 times higher than that of native enzyme. The activation energy of the reaction mediated by the amylase was reduced by 58.1% and 57.3% when PS-PEHA-Ald and PS-PG-Ald used as support respectively.     

High efficient expression of cellobiase gene from Aspergillus niger in the cells of Trichoderma reesei

The cellobiase gene from Aspergillus niger was cloned and connected with the strong promoter Pcbh1 from Trichoderma reesei to construct a recombinant plasmid pHB9 with the hygromycin B resistance marker. The plasmid was transformed into conidia of T. reesei using the modified PEG-CaCl₂ method. Main factors effecting the transformation were discussed and about 99-113 transformants/μg DNA could be obtained under optimal conditions. It was found that the molecular mass of the recombinant cellobiase was about 120 kDa by SDS-PAGE analysis. The activity of cellobiase could reach 5.3 IU/ml after 48 h fermentation, which was as high as 106 times compared with that of the host strain. Meanwhile, the filter paper activity of recombinant T. reesei was 1.44-fold of the host strain. Saccharification of corncob residue with the crude enzyme showed that the hydrolysis yield (84.2%) of recombinant T. reesei was 21% higher than that (69.5%) of the host strain.     

Discovery of 1-(3,4-dichlorophenyl)-N,N-dimethyl-1,2,3,4-tetrahydroquinolin-4-amine, a dual serotonin and dopamine reuptake inhibitor

The present work describes a series of novel tetrahydroquinoline amines that potently inhibit the in vitro reuptake of serotonin and dopamine (dual reuptake inhibitors). The compounds are structurally related to a series we disclosed previously, but are improved with respect to cytochrome P-450 enzyme (CYP) and potassium ion channel Kv11.1 (hERG) inhibition and synthetic accessibility. The detailed synthesis and in vitro activity and ADME profile of the compounds is described, which represent a previously undisclosed dual reuptake inhibitor chemotype.     

宽窄行栽植模式下三倍体毛白杨根系分布特征及其与根系吸水的关系

采用剖面法对宽窄行栽植模式下三倍体毛白杨(triploid Populus tomentosa)的根系分布特征进行了研究;采用管式TDR系统对土壤剖面含水率变化动态进行了连续观测,并据此计算林木根系吸水速率,以探讨土壤含水率、根系分布和根系吸水分布之间的相关关系。研究结果表明:毛白杨的总平均根长密度在林带两侧和不同径向距离处非常接近(P>0.05);但在不同土层间变化很大(P<0.01),其中0-20和60-150 cm土层为根系主要分布区域,其根系所占比例共达86%;不同径阶间的根长密度差异显著(P<0.01),且其比例关系会随空间位置的改变而发生变化。不同栽植方位下,林带东侧毛白杨根系分布的浅层化程度高于西侧,且在径向240-280 cm内其0-0.5 mm的极细根显著多于西侧(P<0.05)。因此,宽窄行栽植模式下,深度和径阶是毛白杨根系分布的主要影响因子,而栽植方位会对其形态构型产生影响。毛白杨根系吸水模式受细根分布的影响,但会随土壤剖面水分有效性分布的变化而变化:当表土层水分有效性增加时,根系吸水主要集中在表土层;当表土层水分有效性降低时,深层土壤根系的吸水贡献率会逐渐增加;当土壤剖面水分条件异质性较高时,根系吸水主要集中在根系密度与水分有效性均较高的区域;当土壤剖面水分分布均匀且不存在水分胁迫时,根系吸水分布与细根分布最为一致。     

Self-assembled virus-like particles from rotavirus structural protein VP6 for targeted drug delivery

Proteins of viral capsid may self-assemble into virus-like particles (VLPs) that can find many biomedical applications such as platform for drug delivery. In this paper, we describe preparation of VLPs by self-assembly of VP6, a rotavirus capsid protein that was chemically conjugated with doxorubicin (DOX), an anticancer drug. VP6 was first highly expressed in E. Coli, followed by purification and renaturation. DOX was then covalently attached to VP6 to form DOX-VP6 (DVP6) conjugates, which were subsequently self-assembled into VLPs under appropriate condition. Next, lactobionic acid (LA) was chemically linked to the surface of the VLPs. We demonstrated that the aforementioned nanosystem shows specific targeting to hepatoma cell line HepG2. The chemically functionalized VLPs, a kind of biological nanoparticles with excellent biocompatibility and biodegradability, can be prepared in large scale from E. Coli through our method, which may find practical applications in biomedicine.     

重组溶葡萄球菌酶在牛奶中的性质研究

溶葡萄球菌酶(Lysostaphin)是一种能高效裂解葡萄球菌细胞壁的肽链内切酶,已有研究表明其能够有效预防和去除奶牛乳腺中葡萄球菌的感染,但该酶在牛奶中的性质研究还缺少详细的研究数据.现对重组溶葡萄球菌酶在牛奶中的一些性质进行研究.检测了加入溶葡萄球茵酶后牛奶性状的变化和重组溶葡萄球菌酶在牛奶中的酶活的稳定性以及溶葡萄球菌酶在牛奶中的抑、杀菌活性.结果显示,重组溶葡萄球菌酶未改变牛奶的外观性状;并且重组溶葡萄球菌酶在39℃牛奶中可以稳定存放至少20 h以上,酶活性保持稳定;同时重组溶葡萄球菌酶在牛奶中对金黄色葡萄球菌等革兰氏阳性菌仍然保持了良好的抑杀菌效果.该研究为今后溶葡萄球菌酶用于奶牛乳腺炎的治疗提供参考依据.