Folding and catalysis by the hairpin ribozyme.

The hairpin ribozyme undergoes a site-specific transesterification cleavage of the phosphodiester backbone. The natural form of the ribozyme is a four-way helical junction, where two arms contain unpaired loops. This folds by pairwise coaxial stacking of helical arms, and a rotation into an antiparallel conformation in which there is close association between the loops. This probably generates the local conformation required to facilitate the trajectory into an in-line SN2 transition state. Folding is induced by the cooperative binding of at least two divalent metal ions, which are probably distributed between the junction and the loop-loop interface. The junction forms the structural scaffold on which the geometry of the ribozyme is built, and structural perturbation of the junction leads to impaired catalytic activity.     

Inorganic pyrophosphatase and photosynthesis by isolated chloroplasts. I. Characterisation of chloroplast pyrophosphatase and its relation to the response to exogenous pyrophosphate

1. 1. A soluble, alkaline, Mg²⁺-dependent inorganic pyrophosphatase (EC 3.6.1.1) has been isolated from the stroma of intact spinach and pea chloroplasts and purified some 100-fold. The enzyme has a high specificity for inorganic pyrophosphate and Mg²⁺, and exhibits maximal activity at pH 8.2–8.6. The enzyme shows allosteric characteristics with Mg²⁺ as activator and optimal rates are obtained with a ratio of Mg²⁺ to PP_i of approximately 4 to 1. The enzyme is inhibited by anionic PP_i and by its own reaction product, orthophosphate.

2. 2. If Mg²⁺ is excluded from the medium in which isolated chloroplasts are assayed, active photosynthetic oxygen evolution can still be observed. The addition of P_i, but not PP_i, will then offset a phosphate deficiency. If external Mg²⁺ is present PP_i will also offset a phosphate deficiency and in these circumstances the rapidity and nature of the response is related to the external pyrophosphatase activity.

3. 3. Evidence is presented that the chloroplast envelope is relatively impermeable to PP_i and that the response to added PP_i is due to external hydrolysis followed by entry of P_i to the chloroplast. These results have significance concerning proposed mechanisms for control of photosynthesis.