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41.
A DNA polymorphism in the bovine c-kit gene 总被引:1,自引:0,他引:1
42.
Chalconoids from Fissistigma bracteolatum 总被引:1,自引:0,他引:1
Phytochemical studies on the leaves of Fissistigma bracteolatum yielded besides the two known compounds 2-hydroxy-3,4,6-trimethoxychalcone (1) and 5,7,8-trimethoxyflav-3-ene (2), five new chalconoids 2-hydroxy-3,4,6-trimethoxychalcene (3), 2-hydroxy-3,4,6-trimethoxydihydrochalcone (4), 2'-hydroxy-3',4',6'-trimethoxydihydrochalcone (5), 2'-hydroxy-3',4',6'-trimethoxy-beta'-methoxychalcane (6) and 2'-hydroxy-3',4',6'-trimethoxy-beta'-ethoxychalcane (7). The structures of these compounds were determined by mass and NMR spectroscopic methods. 相似文献
43.
Pasquier CM; Promponas VI; Varvayannis NJ; Hamodrakas SJ 《Bioinformatics (Oxford, England)》1998,14(8):749-750
Summary : FT is a tool written in C++, which implements the Fourier
analysis method to locate periodicities in aminoacid or DNA sequences. It
is provided for free public use on a WWW server with a Java interface.
Availability : The server address is http://o2.db. uoa.gr/FT Contact :
shamodr@atlas.uoa.gr
相似文献
44.
Fitting genetic mapping functions based on sperm typing: results for three chromosomal segments in cattle 总被引:1,自引:0,他引:1
Genetic mapping functions translate the observed recombination rate between two loci into the corresponding map distance in Morgan units. Different mapping functions give different weights to multiple crossing overs and therefore lead to different results. This points out that not every function is best suited to fit a data set. The data used in this study originated from 2214 sperm from 37 Norwegian bulls, which were genotyped for 11 markers. The optimal functions for the chromosomes 6, 23 and the sex chromosome of cattle were derived using the maximum likelihood method, the likelihood ratio test and empirical discriminant analysis. It became apparent that for each chromosome a different function fitted the data best. These were the function of Rao et al. (Human Heredity 1977, 27, 99–104) with p = 0·63 for chromosome 6, the function of Goldgar & Fain (American Journal of Human Genetics 1988, 43, 38–45) with c0 = 0·42, c1 = 0·47, c2 = 0·07 and c3 = 0·04 for chromosome 23 and the function of Felsenstein (Genetics 1979, 91, 769–75) with K = 0·23 for the sex chromosome. The well known functions of Haldane (Journal of Genetics 1919, 8, 299–309) and Kosambi (Annals of Eugenics 1944, 12, 172–5) were shown to be suboptimal in most cases. A function is said to be multilocus feasible if the evaluation of the probability of all possible recombination events does not lead to negative values. The optimal function for chromosome 23 turned out to be multilocus feasible, whereas the functions for chromosome 6 and the sex chromosome were not. The choice of the correct mapping function is shown to have a considerable impact in mapping studies, when double recombinations have to be taken into account. Since there is no unique best mapping function, it is argued that it might be useful to use a simple parametric mapping function (like the one of Felsenstein 1979) and to estimate the respective parameter specifically for a given data set. 相似文献
45.
Jui-Hsin Huang Zhe-Qing Shen Shu-Pei Lien Kuang-Nan Hsiao Chih-Hsiang Leng Chi-Chang Chen Leung-Kei Siu Pele Choi-Sing Chong 《PloS one》2015,10(8)
Clostridium difficile is an emerging pathogen responsible for opportunistic infections in hospitals worldwide and is the main cause of antibiotic-associated pseudo-membranous colitis and diarrhea in humans. Clostridial toxins A and B (TcdA and TcdB) specifically bind to unknown glycoprotein(s) on the surface of epithelial cells in the host intestine, disrupting the intestinal barrier and ultimately leading to acute inflammation and diarrhea. The C-terminal receptor-binding domain (RBD) of TcdA, which is responsible for the initial binding of the toxin to host glycoproteins, has been predicted to contain 7 potential oligosaccharide-binding sites. To study the specific roles and functions of these 7 putative lectin-like binding regions, a consensus sequence of TcdA RBD derived from different C. difficile strains deposited in the NCBI protein database and three truncated fragments corresponding to the N-terminal (residues 1–411), middle (residues 296–701), and C-terminal portions (residues 524–911) of the RBD (F1, F2 and F3, respectively) were designed and expressed in Escherichia coli. In this study, the recombinant RBD (rRBD) and its truncated fragments were purified, characterized biologically and found to have the following similar properties: (a) are capable of binding to the cell surface of both Vero and Caco-2 cells; (b) possess Toll-like receptor agonist-like adjuvant activities that can activate dendritic cell maturation and increase the secretion of pro-inflammatory cytokines; and (c) function as potent adjuvants in the intramuscular immunization route to enhance immune responses against weak immunogens. Although F1, F2 and F3 have similar repetitive amino acid sequences and putative oligosaccharide-binding domains, they do not possess the same biological and immunological properties: (i) TcdA rRBD and its fragments bind to the cell surface, but only TcdA rRBD and F3 internalize into Vero cells within 15 min; (ii) the fragments exhibit various levels of hemagglutinin (HA) activity, with the exception of the F1 fragment, which demonstrates no HA activity; and (iii) in the presence of alum, all fragments elicit various levels of anti-toxin A-neutralizing antibody responses, but those neutralizing antibodies elicited by F2 did not protect mice against a TcdA challenge. Because TcdA rRBD, F1 and F3 formulated with alum can elicit immune protective responses against the cytotoxicity of TcdA, they represent potential components of future candidate vaccines against C. difficile-associated diseases. 相似文献
46.
Many complex life cycle parasites rely on predator–prey interactions for transmission, whereby definitive hosts become infected via the consumption of an infected intermediate host. As such, these trophic parasites are embedded in the larger community food web. We postulated that exposure to infection and, hence, parasite transmission are inherently linked to host foraging ecology, and that perturbation of the host-resource dynamic will impact parasite transmission dynamics. We employed a field manipulation experiment in which natural populations of the eastern chipmunk (Tamias striatus) were provisioned with a readily available food resource in clumped or uniform spatial distributions. Using replicated longitudinal capture-mark-recapture techniques, replicated supplemented and unsupplemented control sites were monitored before and after treatment for changes in infection levels with three gastro-intestinal helminth parasites. We predicted that definitive hosts subject to food supplementation would experience lower rates of exposure to infective intermediate hosts, presumably because they shifted their diet away from the intermediate host towards the more readily available resource (sunflower seeds). As predicted, prevalence of infection by the trophically transmitted parasite decreased in response to supplemental food treatment, but no such change in infection prevalence was detected for the two directly transmitted parasites in the system. The fact that food supplementation only had an impact on the transmission of the trophically transmitted parasite, and not the directly transmitted parasites, supports our hypothesis that host foraging ecology directly affects exposure to parasites that rely on the ingestion of intermediate hosts for transmission. We concluded that the relative availability of different food resources has important consequences for the transmission of parasites and, more specifically, parasites that are embedded in the food web. The broader implications of these findings for food web dynamics and disease ecology are discussed. 相似文献
47.
Murugan Loganathan Subbiyan Maruthasalam Ling Yin Shiu Wei Ching Lien Wen Hwei Hsu Pei Fang Lee Chih Wen Yu Chin Ho Lin 《In vitro cellular & developmental biology. Plant》2010,46(3):265-273
We describe here a simple and efficient system of soybean (Glycine max L. Merrill) regeneration through direct somatic embryogenesis by using immature embryonic shoot tips (IEST) as explants.
The cultivar Kaohsiung 10 (cv. K10) used in this study did not show embryogenic response either from mature seed-derived explants
(cotyledon, embryonic tip, leaf, shoot and root) or immature cotyledons. However, it showed a high percentage (55.8%) of somatic
embryo (SEm) formation from the IEST excised 2–3 wk after flowering, thus indicating the crucial roles of type and age of
explants. The IEST put forth primary SEm after 2 mo of culturing on Murashige and Skoog (MS) medium supplemented with 6% sucrose,
164.8 μM 2,4-dichlorophenoxyacetic acid (2,4-D), 5 mM asparagine and 684 μM glutamine. Subsequently, secondary SEm were developed
1 mo after culturing on MS medium containing 123.6 μM 2,4-D and 3% sucrose. Cotyledonary embryos were induced on MS medium
supplemented with 0.5% activated charcoal after 1 mo. The embryos were desiccated for 72–96 h on sterile Petri dishes and
regenerated on hormone-free MS medium. Plantlets with well-developed shoots and roots were obtained within 5–6 mo of culturing
of IEST. The SEm-derived plants were morphologically normal and fertile. Various parameters thought to be responsible for
efficient regeneration of soybean through somatic embryogenesis are discussed. To our knowledge, this is the first report
to employ IEST as explants for successful direct somatic embryogenesis in soybean. 相似文献
48.
Subbiyan Maruthasalam Ling Yin Shiu Murugan Loganathan Wei Ching Lien Yi Lun Liu Ching Mei Sun Chih Wen Yu Shu Hsien Hung Yeong Ko Chin Ho Lin 《Plant Growth Regulation》2010,60(2):83-90
Ethylene, a gaseous plant hormone, is responsible for the initiation of reproductive development in pineapple. Reproductive
development can be forced in pineapple (Ananas comosus var. comosus) throughout the year with ethylene. Inhibition of natural flowering initiation with aviglycine [(S)-trans-2-amino-4-(2-aminoethoxy)-3-butenoic acid hydrochloride], an inhibitor of ethylene biosynthesis, provides evidence
that reproductive development in response to cold stress and short daylength is also in response to ethylene production. We
studied the effect of cold treatment of pineapple on ethylene production and flower induction by applying a short-term cold
stress to stem apices. Shoot apices of pineapple treated with ice crystals also produced twice as much ethylene as did those
of control plants and significantly more than was produced by “D” leaf basal tissue. Moreover, pineapple plants treated four
times with ice crystals or ice water were induced to flower under field conditions and the forcing efficiency, as evaluated
by the percentages of inflorescence emergence and fruit harvest, was comparable to forcing with calcium carbide (CaC2) and ethephon. In another field experiment two applications of a 1.0% solution of CaC2 or 0.15% ethephon applied at 48 h intervals was sufficient to force reproductive development of ‘Tainon 17’. Furthermore,
0.5 or 1.0% solutions of CaC2 supplemented with 0.5% activated charcoal (AC) significantly improved the forcing effectiveness of CaC2. This could/would make it possible to reduce the number or concentration, or both, of CaC2 required to effect forcing in pineapple. 相似文献
49.
Aggregate Size and Architecture Determine Microbial Activity Balance for One-Stage Partial Nitritation and Anammox 总被引:1,自引:0,他引:1
Siegfried E. Vlaeminck Akihiko Terada Barth F. Smets Haydée De Clippeleir Thomas Schaubroeck Selin Bolca Lien Demeestere Jan Mast Nico Boon Marta Carballa Willy Verstraete 《Applied and environmental microbiology》2010,76(3):900-909
Aerobic ammonium-oxidizing bacteria (AerAOB) and anoxic ammonium-oxidizing bacteria (AnAOB) cooperate in partial nitritation/anammox systems to remove ammonium from wastewater. In this process, large granular microbial aggregates enhance the performance, but little is known about granulation so far. In this study, three suspended-growth oxygen-limited autotrophic nitrification-denitrification (OLAND) reactors with different inoculation and operation (mixing and aeration) conditions, designated reactors A, B, and C, were used. The test objectives were (i) to quantify the AerAOB and AnAOB abundance and the activity balance for the different aggregate sizes and (ii) to relate aggregate morphology, size distribution, and architecture putatively to the inoculation and operation of the three reactors. A nitrite accumulation rate ratio (NARR) was defined as the net aerobic nitrite production rate divided by the anoxic nitrite consumption rate. The smallest reactor A, B, and C aggregates were nitrite sources (NARR, >1.7). Large reactor A and C aggregates were granules capable of autonomous nitrogen removal (NARR, 0.6 to 1.1) with internal AnAOB zones surrounded by an AerAOB rim. Around 50% of the autotrophic space in these granules consisted of AerAOB- and AnAOB-specific extracellular polymeric substances. Large reactor B aggregates were thin film-like nitrite sinks (NARR, <0.5) in which AnAOB were not shielded by an AerAOB layer. Voids and channels occupied 13 to 17% of the anoxic zone of AnAOB-rich aggregates (reactors B and C). The hypothesized granulation pathways include granule replication by division and budding and are driven by growth and/or decay based on species-specific physiology and by hydrodynamic shear and mixing.In the last few years, autotrophic nitrogen removal via partial nitritation and anoxic ammonium oxidation (anammox) has evolved from lab- to full-scale treatment of nitrogenous wastewaters with a low biodegradable organic compound content, and this evolution has been driven mainly by a significant decrease in the operational costs compared to the costs of conventional nitrification and heterotrophic denitrification (11, 23). Oxygen-limited autotrophic nitrification and denitrification (OLAND) is one of the autotrophic processes used and is a one-stage procedure; i.e., partial nitritation and anammox occur in the same reactor (30). The “functional” autotrophic microorganisms in OLAND include aerobic ammonium-oxidizing bacteria (AerAOB) and anoxic ammonium-oxidizing bacteria (AnAOB). With oxygen, AerAOB oxidize ammonium to nitrite (nitritation), and with the nitrite AnAOB oxidize the residual ammonium to form dinitrogen gas and some nitrate (anammox). Additional aerobic nitrite oxidation to nitrate (nitratation) by nitrite-oxidizing bacteria (NOB) lowers the nitrogen removal efficiency, but it can, for instance, be prevented at low dissolved oxygen (DO) levels because the oxygen affinity of AerAOB is higher than that of NOB (16). Reactor configurations for the OLAND process can be based on suspended biomass growing in aggregates, like that in a sequencing batch reactor (SBR) (37) or a gas lift or upflow reactor (32). For suspended-growth systems there are two important challenges: biomass retention and equilibrated microbial activities.High biomass retention efficiency is a prerequisite in anammox technologies because of the slow growth of AnAOB (33). In suspended biomass systems, settling properties determine the retention of biomass and are related to the microbial aggregate morphology (floc or granule) and size. Granules can be defined as compact and dense aggregates with an approximately spherical external appearance that do not coagulate under decreased hydrodynamic shear conditions and settle significantly faster than flocs (18). Toh and coworkers calculated a lower sludge volume index for aerobic granules than for aerobic flocs and also showed that there was an increase in the settling velocity with increasing granule size (35). Hence, in terms of physical properties, large granules are preferable for suspended-growth applications.OLAND aggregate size not only influences settling properties but also affects the proportion of microbial nitrite production and consumption; lower AerAOB activity and higher AnAOB activity were observed with larger aggregates (25, 37). Theoretically, a microbial aggregate with equal nitrite production and nitrite consumption can remove ammonium autonomously, because of its independence from other aggregates for acquisition and conversion of nitrite. Hence, with an increasing aggregate size and thus with a decreasing ratio of nitrite production to nitrite consumption, three functional categories of aggregates can be distinguished: nitrite sources, autonomous nitrogen removers, and nitrite sinks. Because minimal nitrite accumulation is one of the prerequisites for high nitrogen removal efficiency in OLAND reactors, the presence of excess small aggregates is undesirable (9, 37).Although large granular aggregates are desirable for biomass retention and activity balance, so far no formation mechanisms have been proposed for OLAND granules, in contrast to the well-studied anaerobic (13) and aerobic (1) granules. In order to determine general and environment-specific determinants for aggregate size and architecture, three suspended-growth OLAND reactors with different inoculation and operation (mixing and aeration) parameters were selected, and these reactors were designated reactors A, B, and C (Table (Table1).1). The first objective of this study was to gain more insight into the relationship between OLAND aggregate size, AerAOB and AnAOB abundance, and the activity balance. The second objective was to propose pathways for aggregation and granulation by relating (dis)similarities in aggregate size distribution, morphology, and architecture to differences in reactor inoculation and operation.
Open in a separate windowaAggregates settling at a rate higher than the minimum settling velocity (MSV) were not washed out of the sequencing batch reactors (SBR). The MSV was calculated by dividing the vertical distance of the water volume decanted per cycle by the settling time.bSupernatant from a municipal sludge digestor.cEffluent from a potato-processing factory pretreated with anaerobic digestion and struvite precipitation.dObtained at the end of a reactor start-up study (37).eObtained at the end of a reactor start-up study (9). 相似文献
TABLE 1.
Overview of the three OLAND reactor systems from which suspended biomass samples were obtainedParameter | Reactor Aa | Reactor Ba | Reactor C |
---|---|---|---|
Reactor type | SBR | SBR | Upflow reactor |
Vol (m3) | 0.002 | 4.1 | 600 |
Reactor ht/diam ratio | 0.9 | 4 | 0.5-0.8 |
Inoculum | OLAND biofilm | Activated sludge | Anammox granules |
Wastewater | Synthetic | Domesticb | Industrialc |
Influent ammonium concn (mg N liter−1) | 230-330 | 800 | 250-350 |
Nitrogen removal rate (g N liter−1 day −1) | 0.45,d 1.1e | 0.65 | 1.3 |
Effluent nitrite concn (mg N liter−1) | 30-40d | 5-10 | 5-10 |
Influent COD/effluent COD (mg liter−1) | 0/0 | 240/220 | 200/150 |
pH | 7.4-7.8 | 7.4-7.6 | 8.0 |
Temp (°C) | 35 | 25 | 30-35 |
DO level (mg O2 liter−1) | 0.4-1.1 | 0.5-1.0 | 2.0-3.0 |
Mixing mechanism | Magnetic stirrer | Bladed impeller | Aeration |
Biomass retention mechanism | MSV, >0.73 m h−1 | MSV, >1.4 m h−1 | Three-phase separator |
Sampling time (months after start-up) | 2d | 8 | 30 |
50.
The effects of temperature and nutrient availability on seasonal abundance were compared among Sargassum berberifolium J. Ag., S. polycystum C. Ag., S. siliquosum J. Ag., and S. sandei from a reef in southern Taiwan. Growth temperature limits and optimum were variable between species and between developmental stages. Growth temperature ranges agree with Sargassum periodicity except S. sandei. Sargassum siliquosum can tolerate high temperature as indicated by higher optimum temperature and tolerance limits. Temporal changes in tissue nutrient content and alkaline phosphatase activity and the results from nutrient enrichment bioassay show that S. sandei, S. berberifolium, and S. polycystum are P limited in the early growth period and then N limited, whereas S. siliquosum showed a contrasting trend, reflecting the type of nutrient limitation is variable by time and between species. A smaller nutrient threshold for maximum growth in S. berberifolium, S. polycystum, and S. siliquosum than in S. sandei and higher growth rate in S. berberifolium and S. polycystum indicate the higher growth vigor and nutrient utilization efficiency, the higher abundance. High N reserves in S. berberifolium and S. polycystum exposed to elevated seawater N in the early growth period supported the subsequent growth. The multiple regression analysis indicates that percent cover of S. siliquosum increased with increasing water temperature and dissolved inorganic nitrogen concentrations, whereas that of S. polycystum decreased with increasing water temperature. In conclusion, seasonal dynamics of Sargassum spp. from southern Taiwan are attributable to species and temporal variations in temperature limitation and nutrient utilization strategy. 相似文献