一株耐受低pH光滑球拟酵母RT-6的生理特性

摘要：【目的】 研究一株耐受pH 1.91的光滑球拟酵母 (Torulopsis glabrata) RT-6的生理特性。【方法】在不同的pH条件下,对比分析原菌CCTCC M202019和突变株RT-6胞内pH、胞内ATP水平、H+-ATPase酶活、膜脂肪酸组成和聚磷酸盐含量等生理学特性的差异。【结果】与原菌比较,突变株RT-6：(1)生物量和丙酮酸产量分别提高了60.6 %和85.4 % (56 h);(2) 在胞外pH5.0、4.5、4.0时,胞内pH极显著高于原菌;(3)胞内ATP、H+-ATP     

Systematic Evaluation of Immobilized Trypsin‐Based Fast Protein Digestion for Deep and High‐Throughput Bottom‐Up Proteomics

Immobilized trypsin (IM) has been recognized as an alternative to free trypsin (FT) for accelerating protein digestion 30 years ago. However, some questions of IM still need to be answered. How does the solid matrix of IM influence its preference for protein cleavage and how well can IM perform for deep bottom‐up proteomics compared to FT? By analyzing Escherichia coli proteome samples digested with amine or carboxyl functionalized magnetic bead–based IM (IM‐N or IM‐C) or FT, it is observed that IM‐N with the nearly neutral solid matrix, IM‐C with the negatively charged solid matrix, and FT have similar cleavage preference considering the microenvironment surrounding the cleavage sites. IM‐N (15 min) and FT (12 h) both approach 9000 protein identifications (IDs) from a mouse brain proteome. Compared to FT, IM‐N has no bias in the digestion of proteins that are involved in various biological processes, are located in different components of cells, have diverse functions, and are expressed in varying abundance. A high‐throughput bottom‐up proteomics workflow comprising IM‐N‐based rapid protein cleavage and fast CZE‐MS/MS enables the completion of protein sample preparation, CZE‐MS/MS analysis, and data analysis in only 3 h, resulting in 1000 protein IDs from the mouse brain proteome.     

Molecular chaperone HspB2 inhibited pancreatic cancer cell proliferation via activating p53 downstream gene RPRM,BAI1, and TSAP6

Heat shock proteins (HSPs) were known as the molecular chaperones, which play a pivotal role in the protein quality control system, ensuring correct folding of proteins, and facilitating the correct refolding of damaged proteins via the transient interaction with their substrate proteins. They also practice in the regulation of cell cycles and are involved in apoptosis. We found that HspB2 was almost completely silent in pancreatic cancer and few studies investigated the role of HspB2 in cancer cells, particularly in pancreatic cancer. Here, we reported that HspB2 effectively inhibited cell proliferation in Panc-1 cells. Specifically, we demonstrated that HspB2 could combine mut-p53 and change the DNA binding site of mutant p53, subsequently upregulated the expression of RPRM, BAI-1, and TSAP6 which were the downstream genes of wt-p53, participate in mediating downstream responses to p53, including inhibiting cell proliferation and angiogenesis. The main aim of this study is to investigate the relationship between HspB2 and p53, and provide a novel treatment strategy for pancreatic cancer.     

Eukaryotic elongation factor 2 kinase confers tolerance to stress conditions in cancer cells

Eukaryotic elongation factor 2 (eEF2) is a member of the GTP-binding translation elongation factor family that is essential for protein synthesis. eEF2 kinase (eEF2K) is a structurally and functionally unique protein kinase in the calmodulin-mediated signaling pathway. eEF2K phosphorylates eEF2, thereby inhibiting eEF2 function under stressful conditions. eEF2K regulates numerous processes, such as protein synthesis, cell cycle progression, and induction of autophagy and apoptosis in cancer cells. This review will demonstrate the mechanisms underlying eEF2K activity in cancer cells under different stresses, such as nutrient deprivation, hypoxia, and DNA damage via eEF2 regulation. In vivo, in vitro, and clinical studies indicated that eEF2K may be a novel biomarker and therapeutic target for cancer.     

Distribution pattern, threats and conservation of fish biodiversity in the East Tiaoxi, China

East Tiaoxi River is one of the largest inflowing rivers into Taihu Lake, and the fish fauna in the river is poorly understood. In the present study, an extensive survey of fish was conducted in October and November 2009, May and September 2010 and May 2011 covering a total of 55 sites along the whole river. A total of 84 freshwater fish species belonging to 8 orders, 18 families and 52 genera have been recorded. Among these are 35 species endemic to China, and 3 newly recorded exotic species. The fish composition varies greatly from headwaters to downstream. Based on cluster analysis with presence-absence data, the East Tiaoxi River is divided into four regions, specifically, the upper reach, middle-up reach, middle reach and lower reach. It is observed that species richness and the proportion of omnivorous species increased from upstream to downstream while the proportion of invertivorous species decreased consequently. Habitat alteration, overfishing, pollution and inland navigation adversely affect the fish diversity and ecosystem functioning in the East Tiaoxi River. To protect fish diversity more effectively in the area, the conservation of fish biodiversity in the North Tiaoxi River and Middle Tiaoxi River should be considered as a priority. Meanwhile, shallow zones or backwater areas should be created in the middle-lower reaches. Furthermore, river restoration, in terms of habitat creation, should be considered to protect the structure and diversity of fish communities, halt the progressive deterioration of freshwater ecosystems and sustain a valuable ecological resource for humans.     

Total Flavonoids of Engelhardia roxburghiana Wall. Leaves Alleviated Foam Cells Formation through AKT/mTOR-Mediated Autophagy in the Progression of Atherosclerosis

Engelhardia roxburghiana Wall. is a traditional Chinese medicine used for treating cardiovascular diseases. Our previous study has implicated potential effects of total flavonoids of Engelhardia roxburghiana Wall. (TFER) against hyperlipidemia. The aim of the study is to uncover the effects and underlying mechanisms of TFER on foam cells formation after atherosclerosis. We used high fat diet (HFD) induced Apoe-/- mice and oxidized density lipoprotein (ox-LDL) induced THP-1 cells to mimic process of atherosclerosis in vivo and in vitro, respectively. Lipid accumulation, inflammation response, autophagosomes formation and expressions of autophagy related target genes were assessed. Our present study demonstrated TFER (500 mg/kg) alleviated macrophage infiltration and lipid accumulation in thoracic aortas of HFD-treated mice. In ox-LDL-treated THP-1 cells, MDC staining and Western blot analysis all indicated that the TFER (200 μg/ml) reduced foam cells formation and IL-1β releasing, activated autophagy through suppressing AKT/mTOR signaling, significantly regulating expressions of AKT, p-AKT, mTOR, p-mTOR, Beclin 1, LC3-II, p62. It is suggested that TFER alleviated atherosclerosis progression in vivo and in vitro through reducing foam cells formation and inflammatory responses, and the possible mechanism may be due to the activation of macrophage autophagy by inhibiting AKT and mTOR phosphorylation.     

Age,growth, reproduction and status of resource development of Ptychidio jordani,a critically endangered freshwater fish in the Hongshui River,China

The age, growth, reproduction and resource development status of Ptychidio jordani, as a critically endangered freshwater fish in the Hongshui River, China, was studied in this work. A total of 525 specimens were collected monthly using the cages and gillnets from October 2021 to September 2022 in the Hongshui River. The scale was used for age determination, and the maximum age for both female and male was estimated to be 5 years and 3 years, respectively. Female and male P. jordani showed different growth patterns, which were expressed as L_t = 261.3 (1-e^{−0.4885(t−0.1476)}) and L_t = 251.2 (1-e^{−0.4758(t+0.9643)}), respectively. The overall sex ratio was 1:0.47 (female:male). Female attained sex maturity at 2.34 years (192 mm body length). Month variation of the gonad somatic index indicated that the spawning period occurred from April to October. The absolute fecundity was estimated at 9046 ± 3434 eggs per individual, and the relative fecundity was 38.08 ± 15.77 eggs per gram. The exploitation rate of female and male was 0.233 and 0.495, which indicated that P. jordani was not overfishing. This study provided data on the key life-history traits of P. jordani, which has not been known previously and is essential for conservation strategy and policy development.     

高黎贡山南段海拔梯度森林乔木层时空动态

研究群落物种组成和多样性的时空动态对揭示生物多样性的分布规律以及预测全球变化情景下生物多样性的变化趋势具有重要意义。然而,在山地生态系统中,不同海拔梯度的森林群落物种多样性和系统发育多样性如何随着时间尺度的变化仍不清楚。该研究以高黎贡山南段东、西坡海拔梯度(960～2 878 m)森林群落固定监测样带的17个样方为研究对象,基于2004、2008和2013年乔木层(DBH ≥ 5 cm)重调查数据,分析样方内物种组成、物种多样性和系统发育多样性的时空动态变化。结果表明:(1)沿着海拔梯度,物种多样性呈现单峰分布格局,系统发育多样性呈现上升的趋势,系统发育结构呈现聚集到离散或者随机的结构。(2)在时间尺度上,森林乔木层在物种多样性和系统发育多样性上并未发生显著性变化。然而,系统发育结构随着时间的推移呈现更加聚集的趋势。(3)在海拔梯度上,东坡低海拔区域(960～1 381 m)的森林群落样方呈现显著的物种丧失,其植被完全被耕地所替代。其中,诃子(Terminalia chebula)、麻栎(Quercus acutissima)、清香木(Pistacia weinmanniifolia)、枳椇(Hovenia acerba)和假香冬青(Ilex wattii)等为主要的丧失物种。相反,物种获得主要集中在西坡低海拔的样方,群落中丰富度显著增加的物种主要为曼青冈(Cyclobalanopsis oxyodon)、华山矾(Symplocos chinensis)和台湾杉(Taiwania cryptomerioides)等。据此,我们推测高黎贡山海拔梯度森林乔木层的群落结构和多样性的动态变化在中高海拔受群落演替和气候变化的制约,而在低海拔主要受人类活动的影响。该研究结果加深了对高黎贡山亚热带常绿阔叶林植物群落动态变化的认识,也有助于该地区精准保护策略的制定。