STE20 phosphorylation of AMPK-related kinases revealed by biochemical purifications combined with genetics

We have recently purified mammalian sterile 20 (STE20)–like kinase 3 (MST3) as a kinase for the multifunctional kinases, AMP-activated protein kinase–related kinases (ARKs). However, unresolved questions from this study, such as remaining phosphorylation activities following deletion of the Mst3 gene from human embryonic kidney cells and mice, led us to conclude that there were additional kinases for ARKs. Further purification recovered Ca²⁺/calmodulin-dependent protein kinase kinases 1 and 2 (CaMKK1 and 2), and a third round of purification revealed mitogen-activated protein kinase kinase kinase kinase 5 (MAP4K5) as potential kinases of ARKs. We then demonstrated that MST3 and MAP4K5, both belonging to the STE20-like kinase family, could phosphorylate all 14 ARKs both in vivo and in vitro. Further examination of all 28 STE20 kinases detected variable phosphorylation activity on AMP-activated protein kinase (AMPK) and the salt-inducible kinase 3 (SIK3). Taken together, our results have revealed novel relationships between STE20 kinases and ARKs, with potential physiological and pathological implications.     

Kindlin-2 promotes Src-mediated tyrosine phosphorylation of androgen receptor and contributes to breast cancer progression

Androgen receptor (AR) signaling plays important roles in breast cancer progression. We show here that Kindlin-2, a focal adhesion protein, is critically involved in the promotion of AR signaling and breast cancer progression. Kindlin-2 physically associates with AR and Src through its two neighboring domains, namely F1 and F0 domains, resulting in formation of a Kindlin-2-AR-Src supramolecular complex and consequently facilitating Src-mediated AR Tyr-534 phosphorylation and signaling. Depletion of Kindlin-2 was sufficient to suppress Src-mediated AR Tyr-534 phosphorylation and signaling, resulting in diminished breast cancer cell proliferation and migration. Re-expression of wild-type Kindlin-2, but not AR-binding-defective or Src-binding-defective mutant forms of Kindlin-2, in Kindlin-2-deficient cells restored AR Tyr-534 phosphorylation, signaling, breast cancer cell proliferation and migration. Furthermore, re-introduction of phosphor-mimic mutant AR-Y534D, but not wild-type AR reversed Kindlin-2 deficiency-induced inhibition of AR signaling and breast cancer progression. Finally, using a genetic knockout strategy, we show that ablation of Kindlin-2 from mammary tumors in mouse significantly reduced AR Tyr-534 phosphorylation, breast tumor progression and metastasis in vivo. Our results suggest a critical role of Kindlin-2 in promoting breast cancer progression and shed light on the molecular mechanism through which it functions in this process.Subject terms: Cell signalling, Breast cancer     

Chromosome-level genome assembly and characterization of Sophora Japonica

Sophora japonica is a medium-size deciduous tree belonging to Leguminosae family and famous for its high ecological, economic and medicinal value. Here, we reveal a draft genome of S. japonica, which was ∼511.49 Mb long (contig N50 size of 17.34 Mb) based on Illumina, Nanopore and Hi-C data. We reliably assembled 110 contigs into 14 chromosomes, representing 91.62% of the total genome, with an improved N50 size of 31.32 Mb based on Hi-C data. Further investigation identified 271.76 Mb (53.13%) of repetitive sequences and 31,000 protein-coding genes, of which 30,721 (99.1%) were functionally annotated. Phylogenetic analysis indicates that S. japonica separated from Arabidopsis thaliana and Glycine max ∼107.53 and 61.24 million years ago, respectively. We detected evidence of species-specific and common-legume whole-genome duplication events in S. japonica. We further found that multiple TF families (e.g. BBX and PAL) have expanded in S. japonica, which might have led to its enhanced tolerance to abiotic stress. In addition, S. japonica harbours more genes involved in the lignin and cellulose biosynthesis pathways than the other two species. Finally, population genomic analyses revealed no obvious differentiation among geographical groups and the effective population size continuously declined since 2 Ma. Our genomic data provide a powerful comparative framework to study the adaptation, evolution and active ingredients biosynthesis in S. japonica. More importantly, our high-quality S. japonica genome is important for elucidating the biosynthesis of its main bioactive components, and improving its production and/or processing.     

The novel peptide NbPPI1 identified from Nicotiana benthamiana triggers immune responses and enhances resistance against Phytophthora pathogens

In plants, recognition of small secreted peptides, such as damage/danger‐associated molecular patterns (DAMPs), regulates diverse processes, including stress and immune responses. Here, we identified an SGPS (Ser‐Gly‐Pro‐Ser) motif‐containing peptide, Nicotiana tabacum NtPROPPI, and its two homologs in Nicotiana benthamiana, NbPROPPI1 and NbPROPPI2. Phytophthora parasitica infection and salicylic acid (SA) treatment induced NbPROPPI1/2 expression. Moreover, SignalP predicted that the 89‐amino acid NtPROPPI includes a 24‐amino acid N‐terminal signal peptide and NbPROPPI1/2‐GFP fusion proteins were mainly localized to the periplasm. Transient expression of NbPROPPI1/2 inhibited P. parasitica colonization, and NbPROPPI1/2 knockdown rendered plants more susceptible to P. parasitica. An eight‐amino‐acid segment in the NbPROPPI1 C‐terminus was essential for its immune function and a synthetic 20‐residue peptide, NbPPI1, derived from the C‐terminus of NbPROPPI1 provoked significant immune responses in N. benthamiana. These responses led to enhanced accumulation of reactive oxygen species, activation of mitogen‐activated protein kinases, and up‐regulation of the defense genes Flg22‐induced receptor‐like kinase (FRK) and WRKY DNA‐binding protein 33 (WRKY33). The NbPPI1‐induced defense responses require Brassinosteroid insensitive 1‐associated receptor kinase 1 (BAK1). These results suggest that NbPPI1 functions as a DAMP in N. benthamiana; this novel DAMP provides a potentially useful target for improving plant resistance to Pytophthora pathogens.     

PARP inhibitor olaparib enhances the efficacy of radiotherapy on XRCC2-deficient colorectal cancer cells

The use of PARP inhibitors in combination with radiotherapy is a promising strategy to locally enhance DNA damage in tumors. Loss of XRCC2 compromises DNA damage repairs, and induced DNA damage burdens may increase the reliance on PARP-dependent DNA repairs of cancer cells to render cell susceptibility to PARP inhibitor therapy. Here we tested the hypothesis that XRCC2 loss sensitizes colorectal cancer (CRC) to PARP inhibitor in combination with radiotherapy (RT). We show that high levels of XRCC2 or PARP1 in LARC patients were significantly associated with poor overall survival (OS). Co-expression analyses found that low levels of PARP1 and XRCC2 were associated with better OS. Our in vitro experiments indicated that olaparib+IR led to reduced clonogenic survival, more DNA damage, and longer durations of cell cycle arrest and senescence in XRCC2-deficient cells relative to wild-type cells. Furthermore, our mouse xenograft experiments indicated that RT + olaparib had greater anti-tumor effects and led to long-term remission in mice with XRCC2-deficient tumors. These findings suggest that XRCC2-deficient CRC acquires high sensitivity to PARP inhibition after IR treatment and supports the clinical development for the use of olaparib as a radiosensitizer for treatment of XRCC2-deficient CRC.Subject terms: Colorectal cancer, Prognostic markers     

重金属Zn2+胁迫下麦长管蚜的取食行为

为了探索重金属锌长期胁迫对麦长管蚜(Sitobion avenae)取食行为的变化影响,在模拟自然的实验室条件下,用不同浓度Zn~(2+)溶液浇灌土壤,通过土壤-小麦-蚜虫体系连续处理麦长管蚜15代,用EPG(刺探电位技术)对第1、5、10、15代成蚜的取食行为进行了监测。结果表明,第1代和第5代时,200 mg/kg的Zn~(2+)处理后np波和C波的总持续时间和数量显著低于对照,800mg/kg的Zn~(2+)使其显著增加。到第15代,高剂量的Zn~(2+)处理后np波和C波的总持续时间和数量均显著高于对照。涉及分泌唾液的E1波持续时间及涉及被动取食营养的E2波出现次数并未受到低剂量Zn~(2+)的显著影响,但高剂量的Zn~(2+)处理后单独E1波、伴随稳定E2的E1波总持续时间及E2波的数量均显著降低。麦长管蚜的取食行为会受到重金属锌的影响并且会在高剂量Zn~(2+)的胁迫条件下产生积累效应,而低剂量的Zn~(2+)则促进麦长管蚜对小麦的取食行为。针对重金属而言,此效应发生改变的关键浓度为400 mg/kg,蚜虫取食行为发生改变的关键世代为第5代和第10代。     

不同控草措施对高温季节华南地区蔬菜田杂草群落的影响

华南地区高温季节从6月持续到10月,田间杂草危害严重,当前高温季节田间杂草群落发生格局相关的研究资料积累不足。因此在广州高温季节于标准化菜田通过田间杂草调查、小区控草试验和室内土壤培养,研究了杂草群落发生规律和菜田不同清园和土壤处理控草措施对田间杂草群落短期防效和后续影响。结果表明,试验田休耕50 d后,田间杂草群落中禾草类杂草种类较少但发生量明显占优,阔叶类杂草种类较多而危害总体较轻,莎草类杂草种类较少,发生量与阔叶草相当;牛筋草(Eleusine indica)呈现明显的单优势,光头稗(Echinochloa colona)、千金子(Leptochloa chinensis)、碎米莎草(Cyperus iria)、草龙(Ludwigia hyssopifolia)等的盖度也较高。休耕后取田间土壤在不同温度条件下培养的结果亦表明,高温促进禾草类杂草的出苗和幼苗生长(尤其是40℃/35℃)而15℃恒温培养14 d几乎仅有阔叶类杂草出苗。不同控草措施处理的田间试验结果表明,百草枯处理(900 g a.i./hm~2)后阔叶类杂草总盖度上升的趋势被扭转为禾草类杂草持续占优势;喷施百草枯并铲草处理30 d后杂草盖度即恢复至60%以上,而配合喷施丁草胺(1350 ga.i./hm~2)、乙草胺(750 ga.i./hm~2)、精异丙甲草胺(750 ga.i./hm~2)或二甲戊灵(600 ga.i./hm~2)进行土壤处理30 d后可使杂草盖度与仅喷施百草枯处理分别下降72.9%、84.6%、83.9%和77.5%;土壤处理前配合浅翻耕可明显提升控草效果。典范对应分析(CCA)结果表明,控草处理70d后,百草枯、铲草和翻耕处理均对试验田间杂草群落结构具有显著影响(P0.01),田间各主要杂草在CCA排序图中明显分为两个类群:1)光头稗、牛筋草、千金子、马唐(Digitaria sanguinalis)、水虱草(Fimbristylis miliacea)和三头水蜈蚣(Kyllinga triceps);2)草龙、胜红蓟(Ageratum conyzoides)、鳢肠(Eclipta prostrata)、马齿苋(Portulaca oleracea)等阔叶类杂草和碎米莎草。