Role of the protein's low dielectric constant in the functioning of the photosynthetic reaction center

The high efficiency of the energy storage in the photosynthetic reaction center (RC) is determined by a successful competition of electron transfer from bacteriopheophytin to quinone, as compared to backward recombination of the primary charge-separated state. This relationship is caused by a fine matching of the reorganization energy and the free energy gap making the forward processes activationless, and hence very fast, and mismatching of these two quantities for the backreaction, therefore retarding it strongly. In this study, we show that this matching is due to a low dielectric constant of the RC's protein core because a low dielectric affects strongly electrostatic polarization components of both the reorganization energy and the equilibrium free energy of reaction. If the protein and membrane were replaced by a homogeneous medium with a high dielectric constant, the effective energy storage would be impractical.     

Analysis of crystal structures of aspartic proteinases: On the role of amino acid residues adjacent to the catalytic site of pepsin-like enzymes

To elucidate the role of amino acid residues adjacent to the catalytic site of pepsin-like enzymes, we analyzed and compared the crystal structures of these enzymes, their complexes with inhibitors, and zymogens in the active site area (a total of 82 structures). In addition to the water molecule (W1) located between the active carboxyls and playing a role of the nucleophile during catalytic reaction, another water molecule (W2) at the vicinity of the active groups was found to be completely conserved. This water molecule plays an essential role in formation of a chain of hydrogen-bonded residues between the active site flap and the active carboxyls on ligand binding. These data suggest a new approach to understanding the role of residues around the catalytic site, which can assist the development of the catalytic reaction. The influence of groups adjacent to the active carboxyls is manifested by pepsin activity at pH 1.0. Some features of pepsin-like enzymes and their mutants are discussed in the framework of the approach.     

Assignment of 60 human ESTs in cattle

As part of the human genome study, large-scale cDNA sequencing has produced thousands of Expressed Sequence Tags (ESTs). Généthon has mapped in human 10,000 of these ESTs and has shown that the primers of about 1000 ESTs could amplify bovine DNA. In this work, we have analyzed 233 primer pairs provided by Genethon, to assign type I sequences to the bovine genome by using a hamster-bovine somatic cell hybrid panel. Among these 233 primer pairs, 109 gave a specific PCR product with bovine genomic DNA, but for 50% the size of the PCR product was the same in cattle and hamster, requiring SSCP analysis. Finally, 60 ESTs were assigned to the bovine genome, and among them 46 were found on the bovine chromosome expected from heterologous painting data between cattle and human. Received: 16 December 1999 / Accepted: 6 May 2000