Cover Image,Volume 116, Number 9, September 2019

The new and rapid advancement in the complexity of biologics drug discovery has been driven by a deeper understanding of biological systems combined with innovative new therapeutic modalities, paving the way to breakthrough therapies for previously intractable diseases. These exciting times in biomedical innovation require the development of novel technologies to facilitate the sophisticated, multifaceted, high-paced workflows necessary to support modern large molecule drug discovery. A high-level aspiration is a true integration of “lab-on-a-chip” methods that vastly miniaturize cellulmical experiments could transform the speed, cost, and success of multiple workstreams in biologics development. Several microscale bioprocess technologies have been established that incrementally address these needs, yet each is inflexibly designed for a very specific process thus limiting an integrated holistic application. A more fully integrated nanoscale approach that incorporates manipulation, culture, analytics, and traceable digital record keeping of thousands of single cells in a relevant nanoenvironment would be a transformative technology capable of keeping pace with today's rapid and complex drug discovery demands. The recent advent of optical manipulation of cells using light-induced electrokinetics with micro- and nanoscale cell culture is poised to revolutionize both fundamental and applied biological research. In this review, we summarize the current state of the art for optical manipulation techniques and discuss emerging biological applications of this technology. In particular, we focus on promising prospects for drug discovery workflows, including antibody discovery, bioassay development, antibody engineering, and cell line development, which are enabled by the automation and industrialization of an integrated optoelectronic single-cell manipulation and culture platform. Continued development of such platforms will be well positioned to overcome many of the challenges currently associated with fragmented, low-throughput bioprocess workflows in biopharma and life science research.     

Refinement and application of a conductiometric standpipe technique for measuring interstitial flow velocity in salmonid spawning gravels

A refinement to the conductiometric standpipe method for determining interstitial flow velocities is described. Three modifications to the original calibration are presented: (i) development of calibration curves for gravels of varying permeability; (ii) statistical validation of a practicable field run time; and (iii) integration of zero velocity flow data to the calibration procedure. These modifications are shown to improve the conductiometric probe’s ability to delineate interstitial flow velocities considered critical to salmonid incubation success. Field deployment of the probe highlighted its practical application for determining interstitial flow velocities in salmonid spawning gravels.     

The use of molecular and morphological characters to resolve the taxonomic identity of cryptic species: the case of Miniopterus manavi (Chiroptera, Miniopteridae)

Based on recent molecular phylogenetic studies, the Old World bat family Miniopteridae, composed of species in the genus Miniopterus , has been shown to contain complex paraphyletic species, many of which are cryptic based on convergent morphological characters. Herein we resolve the phylogenetic relationships and taxonomy of the species complex M . manavi on Madagascar and in the Comoro Archipelago, where these animals occur in different bioclimatic zones. First using mitochondrial cytochrome- b sequence data to define clades and then morphology to corroborate the molecular data, including comparisons to type specimens, we demonstrate that animals identified as this taxon are a minimum of three species: M . manavi sensu stricto occurs in at least the central portion of the Central Highlands; M . griveaudi has a broad distribution in lowland northern and central western Madagascar and the Comoros (Anjouan and Grande Comore), and M . aelleni sp. n. has been found in northern and western Madagascar and the Comoros (Anjouan). In each case, these three clades were genetically divergent and monophyletic and the taxa are diagnosable based on different external and craniodental characters. One aspect that helped to define the systematics of this group was isolation of DNA from one of the paratypes of M. manavi collected in 1896 and new topotypic material. Miniopterus manavi is most closely allied to a recently described species, M. petersoni . At several localities, M . griveaudi and M . aelleni have been found in strict sympatry, and together with M. manavi sensu stricto show considerable convergence in morphological characters, but are not immediate sister taxa. In defining and resolving the systematics of cryptic species, such as miniopterid bats, the process of defining clades with molecular tools, segregating the specimens accordingly, and identifying corroborative morphological characters has been notably efficient.     

A rapid method for demonstrating skeletal muscle motor innervation in frozen sections.

Longitudinal 50-100 mum-thick frozen sections of muscle are picked up on slides coated with 3% EDTA and after drying are incubated to demonstrate acetylcholinesterase. Subsequent incubation in 0.5% K3Fe(CN)6 is followed by fixation for 30 minutes in formol-calcium or formol-saline. After washing, the slides are incubated in 20% aqueous AgNO3 containing 0.1% CuSO4 for 2-30 minutes at 37 C. Following development in a 1% solution of quinol (w/v) 5% with respect to NaSO3 (w/v), axons and subneural apparatus stain dark brown to black in contrast to the less well stained muscle fibers and nuclei. This procedure permits study of the pattern of neuromuscular innervation in skeletal muscle 3 1/2-4 hours after receipt of a sample, and makes possible determination of the terminal innervation ratio.     

Muscle fiber types and functional demands in feeding mechanisms of fishes

Profiles of muscle fiber types and pharyngeal jaw dentition vary in accordance with trophic demands and skeletal organization in teleost fishes. Carnivorous, omnivorous, and molluscivorous members of the ecologically analogous Cichlidae and Centrarchidae were compared in terms of their pharyngeal jaw anatomy and branchial muscle histochemistry. The two families differed greatly in patterns of tooth form, wear, and replacement. Four muscle fiber type patterns were discoverd: (1) single fiber, (2) zoned, (3) mosaic, and (4) zoned-mosaic. Multiple fiber type muscles were more prevalent in fishes that masticate tough foods with their pharyngeal jaws. Such muscles were also more prevalent in cichlids than in centrarchids. It appears that muscles with multiple fiber types in lower vertebrates are, as a rule, compartmentalized, whereas in higher vertebrates, multiple fiber type muscles are a musaic matrix. The occurrence of mosaic patterns in some fish branchial muscles, however, suggests that mosaic muscles are initially single fiber type muscles exposed to complex functional demands, such as food preparation. Furthermore, it is plausible that the evolutionary replacement of the lower vertebrate zoning pattern by the higher vertebrate mosaic matrix is directly related to the effects of gravity, a force more influential on terrestrial than on aquatic organisms.     

The dispersion of arctic breeding birds according to snow-free patch dimensions during the spring thaw in the north-eastern Taimyr Peninsula,Russia

 The dispersion of passerines, ptarmigan Lagopus mutus and waders in relation to available snow-free patches is described after spring arrival but prior to the main thaw at Pronchishcheva Lake, north-eastern Taimyr, in June 1991. The numbers of ptarmigan and passerines were proportional to patch perimeter but disproportionately more birds occurred on smaller patches. In contrast, wader numbers were proportional to patch area but disproportionately more occurred along the perimeters of large patches. These patterns are discussed in relation to risk of predation and food availability. We speculate that the predation risk is higher in small patches for uniformly coloured birds but may be lower for white and pied species. The availability of overwintering plants, fresh plant growth and insects is thought to be highest at the perimeters of snow-free patches. Received: 19 November 1993/Accepted: 4 September 1995     

Comparison of leaf morphology among submersed species of Myriophyllum (Haloragaceae) from different habitats and geographical distributions

An image analysis system was used to calculate the surface area and volume of the submerged leaves of seven species of Myriophyllum. We separated the species into two categories based on their distribution and habitat differences and compared their surface area, volume, dry mass, specific leaf area, and surface to volume ratios. The geographic location and habitat of the species explained the greatest percentage of total variance for these variables when compared by analysis of variance. A leaf shape analysis was performed by regressing surface area with volume for each species. Interspecific comparisons of leaf shape were made using analysis of covariance. Fundamental interspecific differences in submerged leaf shape, associated with differences in their geographic distributions and habitats, are explained as adaptations for different nutrient uptake regimes.     

Chemical modification of mitochondria: I. Specific labeling by 2,4-dinitro-5-(bromo-[2-14C]acetoxyethoxy) phenol

The uncoupler dinitrobromoacetoxyethoxyphenol (DNBP) has been synthesized and found to label rapidly and specifically a small number of cysteine residues in rat liver mitochondria. The labeling reaction was essentially complete in a few minutes. Only eight of the mitochondrial polypeptide bands, of MW 97, 58, 52, 43, 30, 26, 22, 13 × 10³, respectively, as separated by SDS gel electrophoresis, were found to carry the radioactive label. In each case, the label which survived acid hydrolysis was covalently bound to cysteine residues through alkylation reaction. Under the present experimental conditions, only 0.45 mole of the label was covalently bound to mitochondrial protein per mole of cytochrome aa₃ and only 1 out of about 650 sulfhydryl groups was so labeled. Consideration of the specificity of the labeling and the observed time-dependence of DNBP-stimulated respiration suggests that the labeled protein molecules are either at or very close to the mitochondrial coupling sites and probably play an important role in the primary energy transduction process.