The Distribution of Isopoda in the Delaware Bay Region

The distributions of 24 marine and estuarine isopods have been reviewed. Lironeca ovalis, Aegathoa medialis, Olencira praegustator, and Probopyrus pandalicola were the only parasitic species found. Of the 20 free-living isopods, Asellus communis and Chiridotea almyra were the only fresh to brackish water species, and Chiridotea arenicola, C. stenops, Cirolana impressa, C. polita and Edotea montosa were the true marine species. The salinity range of Cyathura burbancki was extended and the range of Chiridotea stenops was extended northward while the ranges of Chiridotea nigrescens and C. arenicola were extended southward. The contribution of isopod distributions to the concept of a shallow water Transatlantic zoogeographic province is discussed.     

Studies on the Oyster Community in Delaware: The Effects of the Estuarine Environment on the Associated Fauna

The purpose of this study was to determine the composition of the associated fauna of Delaware's oyster beds. Moreover the relative position of Delaware's oyster producing tributaries lends itself to testing the classic hypothesis concerning the effect of salinity on faunal distribution. Interaction of substrate was also studied. The local oyster beds are termed the bay beds which include planted and natural populations, and the river beds. From 1967 to 1971 approximately 800 samples have been collected and the majority of these were from the bay beds. In 1968 and 1969, 132 samples were systematically collected from the river beds and 19 from the bay beds. These were returned to the laboratory for special care in identification. Samples from fouling panels and oyster rafts provided additional species. 152 species were identified but only 133 species were statistically analysed because they were from the systematic collections. Nonparametric statistics were used. In order to facilitate analysis the top 23 species were selected for special treatment. In order of decreasing frequency of occurrence the species were: Sabellaria vulgaris, Conopeum tenuissimum, Panopeus herbsti, Nereis succinea, Palaemonetes vulgaris, Crassostrea virginica, Nassarius obsoletus, Polydora websteri, Membranipora tenuis, Garveia fransiscana, Bulanus improvisus, Diadumene leucolena, Aiptasiomorpha luciae, Melita nitida, Obelia longicyatha, Alcyonidium polyoum, Sertularia argentea, Crangon septemspinosa, Hydroides dianthus, Eurypanopeus depressus, Modiolus demissus, Parapleustes sp., and Hartlaubella gelatinosa. The diversity of species decreases up the estuary with decreasing salinity. Substrate can alter this pattern in particular cases. Within a given salinity range the presence of any firm substrate or mud influenced the nature of the community from epifaunal to infaunal. Four faunal units were recognized: the planted and natural beds, the four southern rivers, the Leipsic River, the Woodland Beach area. The Leipsic River area marks a critical transition zone with a rapid reduction in species. North of Woodland Beach brackish water conditions begin to prevail. The fauna was more diverse in late spring than in the fall but seasonality was not as marked as expected. The faunal composition of Delaware's oyster beds agrees with the cosmopolitan view of estuaries. The stability — time hypothesis proposed by SANDERS provides a theoretical basis to explain faunal distributions in Delaware's oyster community. The hardy nature and geologic history of this oyster community makes it a likely candidate as a sensitive indicator of environmental degradation in the estuary.     

Comparison of Media for the Isolation of Enterobacter sakazakii

Enterobacter sakazakii is associated with neonatal infections and is occasionally present at low levels (<1 CFU/g) in powdered infant formula milk (IFM). It has been previously reported that some E. sakazakii strains do not grow in standard media for Enterobacteriaceae and coliform bacteria; therefore, a reliable method is needed for recovery of the organism. Three E. sakazakii enrichment broths—Enterobacteriaceae enrichment broth (EE), E. sakazakii selective broth (ESSB), and modified lauryl sulfate broth (mLST)—were compared with a novel broth designed for maximum recovery of E. sakazakii, E. sakazakii enrichment broth (ESE). One hundred seventy-seven strains (100%) grew in ESE, whereas between 2 and 6% of strains did not grow in EE, mLST, or ESSB. E. sakazakii possesses α-glucosidase activity, and a number of selective, chromogenic agars for E. sakazakii isolation based on this enzyme have been developed. E. sakazakii isolation agar produced fewer false-positive colonies than did Druggan-Forsythe-Iversen agar. However, the latter supported the growth of more E. sakazakii strains. It was also determined that 2% of E. sakazakii strains did not produce yellow pigmentation on tryptone soya agar at 25°C, a characteristic frequently cited in the identification of E. sakazakii. The recovery of desiccated E. sakazakii (0.2 to 2000 CFU/25 g) from powdered IFM in the presence of a competing flora was determined with various enrichment broths and differential selective media. Current media designed for the isolation and presumptive identification of E. sakazakii do not support the growth of all currently known E. sakazakii phenotypes; therefore, improvements in the proposed methods are desirable.     

Determination of first order rate constants by natural logarithm of the slope plot exemplified by analysis of Aspergillus niger in batch culture

Finding rate constants from experimental data is often difficult because of offset and noise. A computer program was developed to average experimental data points, reducing the effect of noise, and to produce a log_e of slope plot – a plot of the natural logarithm of the slope of a curve – eliminating the effect of any offset. If y-values depend exponentially on x-values the log_e of slope plot is rectilinear and the slope is equal to the first order rate constant. Therefore the log_e of slope plot provides easy identification of exponential sections of any experimental or calculated data, corresponding rate constants, and small changes in the rate constant as exemplified by analysis of titrant added to a batch culture of Aspergillus niger. The log_e of slope plot was easily applicable and superior to conventional methods of analysis of exponential decreasing or increasing data.     

Phylogenetic relationships in Nuphar (Nymphaeaceae): evidence from morphology,chloroplast DNA,and nuclear ribosomal DNA

The genus Nuphar consists of yellow-flowered waterlilies and is widely distributed in north-temperate bodies of water. Despite regular taxonomic evaluation of these plants, no explicit phylogenetic hypotheses have been proposed for the genus. We investigated phylogenetic relationships in Nuphar using morphology and sequences of the chloroplast gene matK and of the internal transcribed spacer (ITS) regions of nuclear ribosomal DNA. Two major lineages within Nuphar are consistently resolved with the morphological and molecular data sets. One lineage comprises New World taxa and the other represents a primarily Old World lineage. Relationships within the major lineages were poorly resolved by morphology and ITS, yet certain relationships were elucidated by all analyses. Most notable is the strong support for a monophyletic lineage of dwarf taxa and the alliance of the North American N. microphylla with the Eurasian taxa. Minor discordance between the independent cladograms is accounted for by hybridization. The common taxonomic practice of uniting all North American and Eurasian taxa under one species is not supported phylogenetically.     

A Theoretical Study of the cis-syn Pyrimidine Dimers in the Gas Phase and Water Cluster and a Tautomer-Bypass Mechanism for the Origin of UV-induced Mutations

Abstract

A quantum mechanical study of all cis-syn cyclobutane pyrimidine photodimers including the normal and rare tautomeric forms of bases has been performed using the ab initio method at HF/6–31G(d,p), MP2(fc)//HF/6–31G(d,p) and MP2(fc)/6–31G(d,p) levels. A puckering angle of the cyclobutyl ring and twist angle of pyrimidine rings with respect to each other is well described by these calculations. It is predicted that in the gas phase all photodimers containing the rare imino form of cytosine are more stable than those containing its normal form. The Monte Carlo simulations show that the dimer containing the imino form of cytosine is more stabilized by water cluster than that containing its amino forms. The possible biological significance stems from the fact that the cytosine in the dimer directs the incorporation of adenine in the complementary strand during replicative bypass. Data obtained point to the cytosine tautomerism as a possible mechanism for the origin of UV-induced mutation.     

Enhanced matrix metalloproteinase activity in skeletal muscles of rats with congestive heart failure

Patients with congestive heart failure (CHF) are prone to increased skeletal muscle fatigue. Elevated circulatory concentrations of tumor necrosis factor (TNF)-alpha and monocyte chemoattractant protein-1, which may stimulate matrix metalloproteinase (MMP) activity and, thereby, contribute to skeletal muscle dysfunction, are frequently found in CHF. However, whether skeletal muscle MMP activity is altered in CHF is unknown. Hence, we have used a gelatinase assay to assess the activity of MMP and tissue inhibitors of MMP in single skeletal muscles of rats with CHF 6 wk after induction of myocardial infarction. Sham-operated (Sham) rats were used as controls. We also measured the gene expression and protein contents of MMP-2 and MMP-9 in skeletal muscles of these rats. Plasma MMP activity was nearly seven times higher (P < 0.05) in CHF than in Sham rats. Concomitantly, the MMP activity within single slow- and fast-twitch skeletal muscles of CHF rats increased two- to fourfold compared with Sham animals, whereas tissue inhibitor of MMP activity did not differ (P > 0.05). Preformed MMP-2 and MMP-9 were probably activated in CHF, because neither their gene expression nor protein levels were altered (P > 0.05). Serum concentrations of TNF-alpha and monocyte chemoattractant protein-1 remained unchanged (P > 0.05) between CHF and Sham rats during the 6-wk observation period. We conclude that development of CHF in rats enhances MMP activity, which in turn may distort the normal contractile function of skeletal muscle, thereby contributing to increased skeletal muscle fatigue.     

Role of superoxide in the germination of Bacillus anthracis endospores

The spore forming Gram-positive bacterium Bacillus anthracis, the causative agent of anthrax, has achieved notoriety due to its use as a bioterror agent. In the environment, B. anthracis exists as a dormant endospore. Germination of endospores during their internalization within the myeloid phagocyte, and the ability of those endospores to survive exposure to antibacterial killing mechanisms such as superoxide (O(2)*-, is a key initial event in the infective process. We report herein that endospores exposed to fluxes of O(2)*- typically found in stimulated phagocytes had no effect on viability. Further endospores of the Sterne strain of B. anthracis were found to scavenge O(2)*-, which may enhance the ability of the bacterium to survive within the hostile environment of the phagolysosome. Most intriguing was the observation that endospore germination was stimulated by a flux of O(2)*- as low as 1 microM/min. Data presented herein suggest that B. anthracis may co-opt O(2)*- which is produced by stimulated myeloid phagocytes and is an essential element of host immunity, as a necessary step in productive infection of the host.     

Occurrence and relatedness of vancomycin-resistant enterococci in animals, humans, and the environment in different European regions

Vancomycin-resistant enterococci (VRE) in Europe are thought to have emerged partly due to the use of the glycopeptide avoparcin in animal husbandry. We compared the occurrence of VRE in geographical regions of Europe in which until 1997 large amounts of avoparcin were used (Spain, United Kingdom, and Denmark) with the occurrence of VRE in Sweden, where avoparcin was banned in 1986. We also studied the relatedness between VRE strains from different regions and habitats. In total, 2,580 samples were collected from humans, animals, and the environment (soil, sewage, recipient water). VRE resistant to 20 microg/ml vancomycin were identified in 8.2% of the samples and were found most frequently in raw and treated urban sewage samples (means, 71% and 36% of the samples, respectively), pig manure (17%), and hospital sewage (16%). The proportions of VRE-positive sewage samples were similar in Sweden, Spain, and the United Kingdom, whereas pig feces and manure were more often positive in Spain than in Sweden (30% versus 1%). Most VRE were Enterococcus faecium carrying vanA, and computerized biochemical phenotyping of the isolates of different ecological origins showed a high degree of polyclonality. In conclusion, it seems that animal-associated VRE probably reflect the former use of avoparcin in animal production, whereas VRE in human-associated samples may be a result of antibiotic use in hospitals. Since there seems to be a reservoir of the resistance genes in all countries studied, precautions must be taken to limit the use of antibiotics and antibiotic-like feed additives.     

Characterising spatial and temporal variation in the finite rate of population increase across the northern range boundary of the annual grass <Emphasis Type="Italic">Vulpia fasciculata</Emphasis>

Understanding the factors that influence plant distributions is a considerable challenge for ecologists in the face of environmental change. Here, we quantify spatial and temporal variation in the finite rate of population increase of the annual grass Vulpia fasciculata. Specifically, we test the hypothesis that the northern range boundary is associated with finite rates of population increase of less than one. Seeds of three ecotypes of the annual grass V. fasciculata were introduced annually across a range of sites in Great Britain both within (11) and to the north (4) of its current range boundary in each of 4 years. Populations failed to establish at 17% of target sites due to disturbance. At the remaining target sites, the finite rate of population increase, λ, varied from 0.06 to 33.3 with a geometric mean of 1.88. Of the total variance in the rate of population growth, site and year effects accounted independently for 40% of the variation and in interaction for 50%; ecotype accounted for less than 5% of the variation. Variation in the weather between sites and years had little impact on plant performance, and there was no indication that the rate of population growth was lower to the north of the current range boundary. We conclude that current climatic conditions on the coast of Great Britain are not limiting the distribution of V. fasciculata and that seeds from across its current range have roughly equivalent colonising potential.