Comparative Genomics Using Microarrays Reveals Divergence and Loss of Virulence-Associated Genes in Host-Specific Strains of the Insect Pathogen Metarhizium anisopliae

Many strains of Metarhizium anisopliae have broad host ranges, but others are specialists and adapted to particular hosts. Patterns of gene duplication, divergence, and deletion in three generalist and three specialist strains were investigated by heterologous hybridization of genomic DNA to genes from the generalist strain Ma2575. As expected, major life processes are highly conserved, presumably due to purifying selection. However, up to 7% of Ma2575 genes were highly divergent or absent in specialist strains. Many of these sequences are conserved in other fungal species, suggesting that there has been rapid evolution and loss in specialist Metarhizium genomes. Some poorly hybridizing genes in specialists were functionally coordinated, indicative of reductive evolution. These included several involved in toxin biosynthesis and sugar metabolism in root exudates, suggesting that specialists are losing genes required to live in alternative hosts or as saprophytes. Several components of mobile genetic elements were also highly divergent or lost in specialists. Exceptionally, the genome of the specialist cricket pathogen Ma443 contained extra insertion elements that might play a role in generating evolutionary novelty. This study throws light on the abundance of orphans in genomes, as 15% of orphan sequences were found to be rapidly evolving in the Ma2575 lineage.It is difficult to trace and reconstruct the evolutionary processes of diversification and radiation of species. In particular, genes that contribute to ecological diversification and the nature of the evolutionary forces acting during this process are poorly understood, partly because genes directly involved in ecological attributes are hard to identify (13). This is not the case with fungi, as they have genes encoding secreted products with specific environmental adaptations, e.g., scavenging nutrients and penetrating host barriers. During its pathogenic life cycle the ubiquitous insect pathogen Metarhizium anisopliae secretes a formidable array of hydrolytic enzymes, antimicrobial compounds, and toxins. These properties, plus its experimental tractability, have made M. anisopliae a common research subject and model system for studying pathogenicity and for developing useful products for medicine, agriculture, and biotechnology (33).The phylogeny of the Metarhizium genus has been well characterized (12). It is a largely clonal organism (4), containing subtypes with wide host ranges (e.g., M. anisopliae var. anisopliae Ma2575) and subtypes that, like M. anisopliae var. acridum Ma324 (used for locust control), show specificity for certain locusts, beetles, crickets, homopterans, etc., and are unable to infect other insects (5). While some specialized lineages, such as M. anisopliae var. acridum, are phylogenetically distant from generalist strains, implying evolutionarily conserved host use patterns, closely related strains can also differ greatly in host range and requirements for germination (16, 40, 42). Evidence that most specialists arose from generalists includes the following: (i) the vast majority of isolates found in nature belong to the genetically very diverse M. anisopliae var. anisopliae and typically demonstrate wide host ranges; (ii) specialist strains are scattered among generalists in phylogenies and have independently adapted to different insects; (iii) specialization is associated with conditions that are assumed to be derived, including reduced diet breadth (2, 35, 40). Specialist and generalist strains are often closely linked in phylogenies, indicating that there are genetic mechanisms allowing rapid adaptation (40).We are using genetic variation to explore the evolutionary history and pathogenic adaptations of M. anisopliae. The goal is to provide a detailed molecular classification of multiple strains and address the origins of intraspecific differences (gene loss/gain/divergence or modulation of gene expression). Correlation of strain differences with adaptations to specific hosts will identify the underlying regulatory, metabolic, and biosynthetic differences that define host preferences. To initiate this study, we used expressed sequence tag (EST) approaches to compare gene expression patterns between Ma2575 and Ma324 (17). These are two of the most distantly related strains and essentially span the range of variation within M. anisopliae (12, 40). About 60% of the ESTs expressed by Ma2575 during growth on insect cuticle encode secreted enzymes and toxins. We speculated that the large number and diversity of these effectors may be the key to Ma2575''s ability to infect a wide variety of insects. In contrast, Ma324 ESTs revealed fewer hydrolytic enzymes and very few toxins. This relates to life-styles. Strain Ma2575 kills hosts quickly via toxins and grows saprophytically in the cadaver. In contrast, Ma324 causes a systemic infection of host tissues before the host dies. This study showed that ESTs allow different pathogenic strategies to be understood from a broad perspective.Patterns of gene duplication, divergence, and deletion can be specifically determined by heterologous hybridization of total genomic DNA to microarrays (11, 20, 27). Heterologous hybridization has provided a fast and powerful tool facilitating the merging of functional genomics with physiology, ecology, and evolution (7, 31, 38) in species of yeast (22, 27), fish (9, 24), mammals (23, 25), and plants (1, 15). We have already verified that an array of Ma2575 ESTs can be used for heterologous hybridization with cDNAs. Thus, Ma2575 arrays were used to probe the causes of sectorization (production of nonsporulating cultures) in two commercial strains of M. anisopliae var. anisopliae. Probes from both strains cross-reacted strongly with the arrays, although with different expression profiles (46). We also used Ma2575 arrays to identify hundreds of genes differentially regulated by Ma324 in response to host or nonhost cuticles (45). Although only 8% of paralogous Ma2575 genes have greater than 80% identity, we expected cross-hybridization would potentially overestimate the overlap in genes expressed by different strains. However, individual genes within gene families were distinguished, revealing processes unique to Ma324 (45). In this study we exploit the fact that heterologous cDNA can provide information on physiological processes to allow us to gain a mechanistic perspective on the different life-styles that exist in insect-fungus interactions.     

On-Line Detection of Microbial Contaminations in Animal Cell Reactor Cultures Using an Electronic Nose Device

An electronic nose (EN) device was used to detect microbial and viral contaminations in a variety of animal cell culture systems. The emission of volatile components from the cultures accumulated in the bioreactor headspace, was sampled and subsequently analysed by the EN device. The EN, which was equipped with an array of 17 chemical gas sensors of varying selectivity towards the sampled volatile molecules, generated response patterns of up to 85 computed signals. Each 15 or 20 min a new gas sample was taken generating a new response pattern. A software evaluation tool visualised the data mainly by using principal component analysis. The EN was first used to detect microbial contaminations in a Chinese hamster ovary (CHO) cell line producing a recombinant human macrophage colony stimulating factor (rhM-CSF). The CHO cell culture was contaminated by Escherichia coli, Pseudomonas aeruginosa, Staphylococcus aureus and Candida utilis which all were detected. The response patterns from the CHO cell culture were compared with monoculture references of the microorganisms. Second, contaminations were studied in an Sf-9 insect cell culture producing another recombinant protein (VP2 protein). Contaminants were detected from E. coli, a filamentous fungus and a baculovirus. Third, contamination of a human cell line, HEK-293, infected with E. coli exhibited comparable results. Fourth, bacterial contaminations could also be detected in cultures of a MLV vector producer cell line. Based on the overall experiences in this study it is concluded that the EN method has in a number of cases the potential to be developed into a useful on-line contamination alarm in order to support safety and economical operation for industrial cultivation.     

Cancer brings forward oviposition in the fly Drosophila melanogaster

Hosts often accelerate their reproductive effort in response to a parasitic infection, especially when their chances of future reproduction decrease with time from the onset of the infection. Because malignancies usually reduce survival, and hence potentially the fitness, it is expected that hosts with early cancer could have evolved to adjust their life‐history traits to maximize their immediate reproductive effort. Despite the potential importance of these plastic responses, little attention has been devoted to explore how cancers influence animal reproduction. Here, we use an experimental setup, a colony of genetically modified flies Drosophila melanogaster which develop colorectal cancer in the anterior gut, to show the role of cancer in altering life‐history traits. Specifically, we tested whether females adapt their reproductive strategy in response to harboring cancer. We found that flies with cancer reached the peak period of oviposition significantly earlier (i.e., 2 days) than healthy ones, while no difference in the length and extent of the fecundity peak was observed between the two groups of flies. Such compensatory responses to overcome the fitness‐limiting effect of cancer could explain the persistence of inherited cancer‐causing mutant alleles in the wild.     

Effects of chronic cardiac decentralization on functional properties of canine intracardiac neurons in vitro

Although intrinsic cardiac neurons display ongoing activity after chronic interruption of extrinsic autonomic inputs to the heart, the effects of decentralization on individual neurons remain unknown. The objective of this study was to determine the effects of chronic (3-4 wk) surgical decentralization on intracellular properties of, and neurotransmission among, neurons contained within the canine intrinsic right atrial ganglionated plexus in vitro. Properties of neurons from decentralized hearts were compared with those of neurons from sham-operated hearts (controls). Two populations of neurons were identified by their firing behavior in response to intracellular current injection. Fifty-nine percent of control neurons and 72% of decentralized neurons were phasic (discharged one action potential on excitation). Forty-one percent of control neurons and 27% of decentralized neurons were accommodating (multiple discharge with decrementing frequency). After chronic decentralization, input resistance of phasic neurons increased, whereas the duration of afterhyperpolarization of accommodating neurons decreased. Postsynaptic responses to interganglionic nerve stimulation were evoked in 89% of control neurons and 83% of decentralized neurons; the majority of these responses involved nicotinic receptors. These results show that, after chronic decentralization, intrinsic cardiac neurons 1) undergo changes in membrane properties that may lead to increased excitability while 2) maintaining synaptic neurotransmission within the intrinsic cardiac ganglionated plexus.     

An easy and reliable method for establishment and maintenance of leaf and root cell cultures ofArabidopsis thaliana

Cell suspension cultures are useful for a wide range of biochemical and physiological studies, yet their production can be technically demanding and often unreliable. Here we describe a protocol for producing Arabidopsis cell suspension cultures that is reliable and easy to use.     

Changing concepts in plant hormone action

Summary A plant hormone is not, in the classic animal sense, a chemical synthesized in one organ, transported to a second organ to exert a chemical action to control a physiological event. Any phytohormone can be synthesized everywhere and can influence different growth and development processes at different places. The concept of physiological activity under hormonal control cannot be dissociated from changes in concentrations at the site of action, from spatial differences and changes in the tissue's sensitivity to the compound, from its transport and its metabolism, from balances and interactions with the other phytohormones, or in their metabolic relationships, and in their signaling pathways as well. Secondary messengers are also involved. Hormonal involvement in physiological processes can appear through several distinct manifestations (as environmental sensors, homeostatic regulators and spatio-temporal synchronizers, resource allocators, biotime adjusters, etc.), dependent on or integrated with the primary biochemical pathways. The time has also passed for the hypothesized ‘specific’ developmental hormones, rhizocaline, canlocaline, and florigen: root, stem, and flower formation result from a sequential control of specific events at the right places through a coordinated control by electrical signals, the known phytohormones and nonspecific molecules of primary and secondary metabolism, and involve both cytoplasmic and apoplastic compartments. These contemporary views are examined in this review.     

Field studies using a recombinant mycoinsecticide (Metarhizium anisopliae) reveal that it is rhizosphere competent

In the summer of 2000, we released genetically altered insect-pathogenic fungi onto a plot of cabbages at a field site on the Upper Marlboro Research Station, Md. The transformed derivatives of Metarhizium anisopliae ARSEF 1080, designated GPMa and GMa, carried the Aequorea victoria green fluorescent protein (gfp) gene alone (GMa) or with additional protease genes (Pr1) (GPMa). The study (i) confirmed the utility of gfp for monitoring pathogen strains in field populations over time, (ii) demonstrated little dissemination of transgenic strains and produced no evidence of transmission by nontarget insects, (iii) found that recombinant fungi were genetically stable over 1 year under field conditions, and (iv) determined that deployment of the transgenic strains did not depress the culturable indigenous fungal microflora. The major point of the study was to monitor the fate (survivorship) of transformants under field conditions. In nonrhizosphere soil, the amount of GMa decreased from 10(5) propagules/g at depths of 0 to 2 cm to 10(3) propagules/g after several months. However, the densities of GMa remained at 10(5) propagules/g in the inner rhizosphere, demonstrating that rhizospheric soils are a potential reservoir for M. anisopliae. These results place a sharp focus on the biology of the soil/root interphase as a site where plants, insects, and pathogens interact to determine fungal biocontrol efficacy, cycling, and survival. However, the rhizospheric effect was less marked for GPMa, and overall it showed reduced persistence in soils than did GMa.